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Published in: BMC Urology 1/2020

01-12-2020 | Shock | Research article

Machine learning prediction of stone-free success in patients with urinary stone after treatment of shock wave lithotripsy

Authors: Seung Woo Yang, Yun Kyong Hyon, Hyun Seok Na, Long Jin, Jae Geun Lee, Jong Mok Park, Ji Yong Lee, Ju Hyun Shin, Jae Sung Lim, Yong Gil Na, Kiwan Jeon, Taeyoung Ha, Jinbum Kim, Ki Hak Song

Published in: BMC Urology | Issue 1/2020

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Abstract

Background

The aims of this study were to determine the predictive value of decision support analysis for the shock wave lithotripsy (SWL) success rate and to analyze the data obtained from patients who underwent SWL to assess the factors influencing the outcome by using machine learning methods.

Methods

We retrospectively reviewed the medical records of 358 patients who underwent SWL for urinary stone (kidney and upper-ureter stone) between 2015 and 2018 and evaluated the possible prognostic features, including patient population characteristics, urinary stone characteristics on a non-contrast, computed tomographic image. We performed 80% training set and 20% test set for the predictions of success and mainly used decision tree-based machine learning algorithms, such as random forest (RF), extreme gradient boosting trees (XGBoost), and light gradient boosting method (LightGBM).

Results

In machine learning analysis, the prediction accuracies for stone-free were 86.0, 87.5, and 87.9%, and those for one-session success were 78.0, 77.4, and 77.0% using RF, XGBoost, and LightGBM, respectively. In predictions for stone-free, LightGBM yielded the best accuracy and RF yielded the best one in those for one-session success among those methods. The sensitivity and specificity values for machine learning analytics are (0.74 to 0.78 and 0.92 to 0.93) for stone-free and (0.79 to 0.81 and 0.74 to 0.75) for one-session success, respectively. The area under curve (AUC) values for machine learning analytics are (0.84 to 0.85) for stone-free and (0.77 to 0.78) for one-session success and their 95% confidence intervals (CIs) are (0.730 to 0.933) and (0.673 to 0.866) in average of methods, respectively.

Conclusions

We applied a selected machine learning analysis to predict the result after treatment of SWL for urinary stone. About 88% accurate machine learning based predictive model was evaluated. The importance of machine learning algorithm can give matched insights to domain knowledge on effective and influential factors for SWL success outcomes.
Literature
1.
go back to reference Chaussy C, Brendel W, Schmiedt E. Extracorporeally induced destruction of kidney stones by shock waves. Lancet. 1980;2(8207):1265–8.CrossRef Chaussy C, Brendel W, Schmiedt E. Extracorporeally induced destruction of kidney stones by shock waves. Lancet. 1980;2(8207):1265–8.CrossRef
2.
go back to reference Ben Khalifa B, Naouar S, Gazzah W, Salem B, El Kamel R. Predictive factors of extracorporeal shock wave lithotripsy success for urinary stones. Tunis Med. 2016;94(5):397–400.PubMed Ben Khalifa B, Naouar S, Gazzah W, Salem B, El Kamel R. Predictive factors of extracorporeal shock wave lithotripsy success for urinary stones. Tunis Med. 2016;94(5):397–400.PubMed
3.
go back to reference Bres-Niewada E, Dybowski B, Radziszewski P. Predicting stone composition before treatment - can it really drive clinical decisions? Cent European J Urol. 2014;67(4):392–6.CrossRef Bres-Niewada E, Dybowski B, Radziszewski P. Predicting stone composition before treatment - can it really drive clinical decisions? Cent European J Urol. 2014;67(4):392–6.CrossRef
4.
go back to reference Zumstein V, Betschart P, Abt D, Schmid HP, Panje CM, Putora PM. Surgical management of urolithiasis - a systematic analysis of available guidelines. BMC Urol. 2018;18(1):25.CrossRef Zumstein V, Betschart P, Abt D, Schmid HP, Panje CM, Putora PM. Surgical management of urolithiasis - a systematic analysis of available guidelines. BMC Urol. 2018;18(1):25.CrossRef
5.
go back to reference Cone EB, Eisner BH, Ursiny M, Pareek G. Cost-effectiveness comparison of renal calculi treated with ureteroscopic laser lithotripsy versus shockwave lithotripsy. J Endourol. 2014;28(6):639–43.CrossRef Cone EB, Eisner BH, Ursiny M, Pareek G. Cost-effectiveness comparison of renal calculi treated with ureteroscopic laser lithotripsy versus shockwave lithotripsy. J Endourol. 2014;28(6):639–43.CrossRef
6.
go back to reference Pareek G, Armenakas NA, Fracchia JA. Hounsfield units on computerized tomography predict stone-free rates after extracorporeal shock wave lithotripsy. J Urol. 2003;169(5):1679–81.CrossRef Pareek G, Armenakas NA, Fracchia JA. Hounsfield units on computerized tomography predict stone-free rates after extracorporeal shock wave lithotripsy. J Urol. 2003;169(5):1679–81.CrossRef
7.
go back to reference Patel T, Kozakowski K, Hruby G, Gupta M. Skin to stone distance is an independent predictor of stone-free status following shockwave lithotripsy. J Endourol. 2009;23(9):1383–5.CrossRef Patel T, Kozakowski K, Hruby G, Gupta M. Skin to stone distance is an independent predictor of stone-free status following shockwave lithotripsy. J Endourol. 2009;23(9):1383–5.CrossRef
8.
go back to reference Gupta NP, Ansari MS, Kesarvani P, Kapoor A, Mukhopadhyay S. Role of computed tomography with no contrast medium enhancement in predicting the outcome of extracorporeal shock wave lithotripsy for urinary calculi. BJU Int. 2005;95(9):1285–8.CrossRef Gupta NP, Ansari MS, Kesarvani P, Kapoor A, Mukhopadhyay S. Role of computed tomography with no contrast medium enhancement in predicting the outcome of extracorporeal shock wave lithotripsy for urinary calculi. BJU Int. 2005;95(9):1285–8.CrossRef
9.
go back to reference Obermeyer Z, Emanuel EJ. Predicting the future - big data, machine learning, and clinical medicine. N Engl J Med. 2016;375(13):1216–9.CrossRef Obermeyer Z, Emanuel EJ. Predicting the future - big data, machine learning, and clinical medicine. N Engl J Med. 2016;375(13):1216–9.CrossRef
10.
go back to reference De Silva D, Ranasinghe W, Bandaragoda T, Adikari A, Mills N, Iddamalgoda L, et al. Machine learning to support social media empowered patients in cancer care and cancer treatment decisions. PLoS One. 2018;13(10):e0205855.CrossRef De Silva D, Ranasinghe W, Bandaragoda T, Adikari A, Mills N, Iddamalgoda L, et al. Machine learning to support social media empowered patients in cancer care and cancer treatment decisions. PLoS One. 2018;13(10):e0205855.CrossRef
11.
go back to reference Kam HT, editor. Random decision forest. Proc of the 3rd Int'l Conf on Document Analysis and Recognition, Montreal, Canada, August; 1995. Kam HT, editor. Random decision forest. Proc of the 3rd Int'l Conf on Document Analysis and Recognition, Montreal, Canada, August; 1995.
12.
go back to reference Chen T, Guestrin C, editors. Xgboost: A scalable tree boosting system. Proceedings of the 22nd acm sigkdd international conference on knowledge discovery and data mining; 2016: ACM. Chen T, Guestrin C, editors. Xgboost: A scalable tree boosting system. Proceedings of the 22nd acm sigkdd international conference on knowledge discovery and data mining; 2016: ACM.
13.
go back to reference Ke G, Wang T, Chen W, Ma W, Ye Q, Liu TY, et al. LightGBM: A highly efficient gradient boosting decision tree. Adv neural inf proces syst Advances in Neural Information Processing Systems. 2017;2017-December:3147–55. Ke G, Wang T, Chen W, Ma W, Ye Q, Liu TY, et al. LightGBM: A highly efficient gradient boosting decision tree. Adv neural inf proces syst Advances in Neural Information Processing Systems. 2017;2017-December:3147–55.
14.
go back to reference Kevin PM. Machine learning: a probabilistic perspective. MIT Press, Cambridge, UK; 2012. Kevin PM. Machine learning: a probabilistic perspective. MIT Press, Cambridge, UK; 2012.
15.
go back to reference Hastie T, Tibshirani R, Friedman JH. The elements of statistical learning : data mining, inference, and prediction2017. Hastie T, Tibshirani R, Friedman JH. The elements of statistical learning : data mining, inference, and prediction2017.
16.
go back to reference Wiesenthal JD, Ghiculete D, DAH RJ, Pace KT. Evaluating the importance of mean stone density and skin-to-stone distance in predicting successful shock wave lithotripsy of renal and ureteric calculi. Urol Res. 2010;38(4):307–13.CrossRef Wiesenthal JD, Ghiculete D, DAH RJ, Pace KT. Evaluating the importance of mean stone density and skin-to-stone distance in predicting successful shock wave lithotripsy of renal and ureteric calculi. Urol Res. 2010;38(4):307–13.CrossRef
17.
go back to reference Cho KS, Jung HD, Ham WS, Chung DY, Kang YJ, Jang WS, et al. Optimal skin-to-stone distance is a positive predictor for successful outcomes in upper ureter calculi following extracorporeal shock wave lithotripsy: a Bayesian model averaging approach. PLoS One. 2015;10(12):e0144912.CrossRef Cho KS, Jung HD, Ham WS, Chung DY, Kang YJ, Jang WS, et al. Optimal skin-to-stone distance is a positive predictor for successful outcomes in upper ureter calculi following extracorporeal shock wave lithotripsy: a Bayesian model averaging approach. PLoS One. 2015;10(12):e0144912.CrossRef
18.
go back to reference El-Nahas AR, El-Assmy AM, Mansour O, Sheir KZ. A prospective multivariate analysis of factors predicting stone disintegration by extracorporeal shock wave lithotripsy: the value of high-resolution noncontrast computed tomography. Eur Urol 2007;51(6):1688–1693; discussion 93-4. El-Nahas AR, El-Assmy AM, Mansour O, Sheir KZ. A prospective multivariate analysis of factors predicting stone disintegration by extracorporeal shock wave lithotripsy: the value of high-resolution noncontrast computed tomography. Eur Urol 2007;51(6):1688–1693; discussion 93-4.
19.
go back to reference Weld KJ, Montiglio C, Morris MS, Bush AC, Cespedes RD. Shock wave lithotripsy success for renal stones based on patient and stone computed tomography characteristics. Urology. 2007;70(6):1043–1046; discussion 6-7. Weld KJ, Montiglio C, Morris MS, Bush AC, Cespedes RD. Shock wave lithotripsy success for renal stones based on patient and stone computed tomography characteristics. Urology. 2007;70(6):1043–1046; discussion 6-7.
20.
go back to reference Kacker R, Zhao L, Macejko A, Thaxton CS, Stern J, Liu JJ, et al. Radiographic parameters on noncontrast computerized tomography predictive of shock wave lithotripsy success. J Urol. 2008;179(5):1866–71.CrossRef Kacker R, Zhao L, Macejko A, Thaxton CS, Stern J, Liu JJ, et al. Radiographic parameters on noncontrast computerized tomography predictive of shock wave lithotripsy success. J Urol. 2008;179(5):1866–71.CrossRef
21.
go back to reference Eisner BH, Kambadakone A, Monga M, Anderson JK, Thoreson AA, Lee H, et al. Computerized tomography magnified bone windows are superior to standard soft tissue windows for accurate measurement of stone size: an in vitro and clinical study. J Urol. 2009;181(4):1710–5.CrossRef Eisner BH, Kambadakone A, Monga M, Anderson JK, Thoreson AA, Lee H, et al. Computerized tomography magnified bone windows are superior to standard soft tissue windows for accurate measurement of stone size: an in vitro and clinical study. J Urol. 2009;181(4):1710–5.CrossRef
22.
go back to reference Lee JY, Kim JH, Kang DH, Chung DY, Lee DH, Do Jung H, et al. Stone heterogeneity index as the standard deviation of Hounsfield units: a novel predictor for shock-wave lithotripsy outcomes in ureter calculi. Sci Rep. 2016;6:23988.CrossRef Lee JY, Kim JH, Kang DH, Chung DY, Lee DH, Do Jung H, et al. Stone heterogeneity index as the standard deviation of Hounsfield units: a novel predictor for shock-wave lithotripsy outcomes in ureter calculi. Sci Rep. 2016;6:23988.CrossRef
23.
go back to reference Ahmed MH, Ahmed HT, Khalil AA. Renal stone disease and obesity: what is important for urologists and nephrologists? Ren Fail. 2012;34(10):1348–54.CrossRef Ahmed MH, Ahmed HT, Khalil AA. Renal stone disease and obesity: what is important for urologists and nephrologists? Ren Fail. 2012;34(10):1348–54.CrossRef
24.
go back to reference Hwang I, Jung SI, Kim KH, Hwang EC, Yu HS, Kim SO, et al. Factors influencing the failure of extracorporeal shock wave lithotripsy with Piezolith 3000 in the management of solitary ureteral stone. Urolithiasis. 2014;42(3):263–7.CrossRef Hwang I, Jung SI, Kim KH, Hwang EC, Yu HS, Kim SO, et al. Factors influencing the failure of extracorporeal shock wave lithotripsy with Piezolith 3000 in the management of solitary ureteral stone. Urolithiasis. 2014;42(3):263–7.CrossRef
25.
go back to reference Choi JW, Song PH, Kim HT. Predictive factors of the outcome of extracorporeal shockwave lithotripsy for ureteral stones. Korean J Urol. 2012;53(6):424–30.CrossRef Choi JW, Song PH, Kim HT. Predictive factors of the outcome of extracorporeal shockwave lithotripsy for ureteral stones. Korean J Urol. 2012;53(6):424–30.CrossRef
26.
go back to reference Hatiboglu G, Popeneciu V, Kurosch M, Huber J, Pahernik S, Pfitzenmaier J, et al. Prognostic variables for shockwave lithotripsy (SWL) treatment success: no impact of body mass index (BMI) using a third generation lithotripter. BJU Int. 2011;108(7):1192–7.CrossRef Hatiboglu G, Popeneciu V, Kurosch M, Huber J, Pahernik S, Pfitzenmaier J, et al. Prognostic variables for shockwave lithotripsy (SWL) treatment success: no impact of body mass index (BMI) using a third generation lithotripter. BJU Int. 2011;108(7):1192–7.CrossRef
27.
go back to reference Janssen I, Heymsfield SB, Ross R. Low relative skeletal muscle mass (sarcopenia) in older persons is associated with functional impairment and physical disability. J Am Geriatr Soc. 2002;50(5):889–96.CrossRef Janssen I, Heymsfield SB, Ross R. Low relative skeletal muscle mass (sarcopenia) in older persons is associated with functional impairment and physical disability. J Am Geriatr Soc. 2002;50(5):889–96.CrossRef
28.
go back to reference Shen W, Punyanitya M, Wang Z, Gallagher D, St-Onge MP, Albu J, et al. Total body skeletal muscle and adipose tissue volumes: estimation from a single abdominal cross-sectional image. J Appl Physiol (1985). 2004;97(6):2333–8.CrossRef Shen W, Punyanitya M, Wang Z, Gallagher D, St-Onge MP, Albu J, et al. Total body skeletal muscle and adipose tissue volumes: estimation from a single abdominal cross-sectional image. J Appl Physiol (1985). 2004;97(6):2333–8.CrossRef
29.
go back to reference Cruz-Jentoft AJ, Baeyens JP, Bauer JM, Boirie Y, Cederholm T, Landi F, et al. Sarcopenia: European consensus on definition and diagnosis: report of the European working group on sarcopenia in older people. Age Ageing. 2010;39(4):412–23.CrossRef Cruz-Jentoft AJ, Baeyens JP, Bauer JM, Boirie Y, Cederholm T, Landi F, et al. Sarcopenia: European consensus on definition and diagnosis: report of the European working group on sarcopenia in older people. Age Ageing. 2010;39(4):412–23.CrossRef
30.
go back to reference Jones KI, Doleman B, Scott S, Lund JN, Williams JP. Simple psoas cross-sectional area measurement is a quick and easy method to assess sarcopenia and predicts major surgical complications. Color Dis. 2015;17(1):O20–6.CrossRef Jones KI, Doleman B, Scott S, Lund JN, Williams JP. Simple psoas cross-sectional area measurement is a quick and easy method to assess sarcopenia and predicts major surgical complications. Color Dis. 2015;17(1):O20–6.CrossRef
Metadata
Title
Machine learning prediction of stone-free success in patients with urinary stone after treatment of shock wave lithotripsy
Authors
Seung Woo Yang
Yun Kyong Hyon
Hyun Seok Na
Long Jin
Jae Geun Lee
Jong Mok Park
Ji Yong Lee
Ju Hyun Shin
Jae Sung Lim
Yong Gil Na
Kiwan Jeon
Taeyoung Ha
Jinbum Kim
Ki Hak Song
Publication date
01-12-2020
Publisher
BioMed Central
Published in
BMC Urology / Issue 1/2020
Electronic ISSN: 1471-2490
DOI
https://doi.org/10.1186/s12894-020-00662-x

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