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Published in: BMC Public Health 1/2016

Open Access 01-12-2016 | Research article

Spatial modeling of HIV and HSV-2 among women in Kenya with spatially varying coefficients

Authors: Elphas Okango, Henry Mwambi, Oscar Ngesa

Published in: BMC Public Health | Issue 1/2016

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Abstract

Background

Disease mapping has become popular in the field of statistics as a method to explain the spatial distribution of disease outcomes and as a tool to help design targeted intervention strategies.
Most of these models however have been implemented with assumptions that may be limiting or altogether lead to less meaningful results and hence interpretations. Some of these assumptions include the linearity, stationarity and normality assumptions. Studies have shown that the linearity assumption is not necessarily true for all covariates. Age for example has been found to have a non-linear relationship with HIV and HSV-2 prevalence. Other studies have made stationarity assumption in that one stimulus e.g. education, provokes the same response in all the regions under study and this is also quite restrictive. Responses to stimuli may vary from region to region due to aspects like culture, preferences and attitudes.

Methods

We perform a spatial modeling of HIV and HSV-2 among women in Kenya, while relaxing these assumptions i.e. the linearity assumption by allowing the covariate age to have a non-linear effect on HIV and HSV-2 prevalence using the random walk model of order 2 and the stationarity assumption by allowing the rest of the covariates to vary spatially using the conditional autoregressive model. The women data used in this study were derived from the 2007 Kenya AIDS indicator survey where women aged 15–49 years were surveyed. A full Bayesian approach was used and the models were implemented in R-INLA software.

Results

Age was found to have a non-linear relationship with both HIV and HSV-2 prevalence, and the spatially varying coefficient model provided a significantly better fit for HSV-2. Age-at first sex also had a greater effect on HSV-2 prevalence in the Coastal and some parts of North Eastern regions suggesting either early marriages or child prostitution. The effect of education on HIV prevalence among women was more in the North Eastern, Coastal, Southern and parts of Central region.

Conclusions

The models introduced in this study enable relaxation of two limiting assumptions in disease mapping. The effects of the covariates on HIV and HSV-2 were found to vary spatially. The effect of education on HSV-2 status for example was lower in North Eastern and parts of the Rift region than most of the other parts of the country. Age was found to have a non-linear effect on HIV and HSV-2 prevalence, a linearity assumption would have led to wrong results and hence interpretations. The findings are relevant in that they can be used in informing tailor made strategies for tackling HIV and HSV-2 in different counties. The methodology used here may also be replicated in other studies with similar data.
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Literature
2.
go back to reference Looker K, Garnett G, Schmid G. An estimate of the global prevalence and incidence of herpes simplex virus type 2 infection. Bull World Health Organ. 2008;86(10):805–12.CrossRefPubMedPubMedCentral Looker K, Garnett G, Schmid G. An estimate of the global prevalence and incidence of herpes simplex virus type 2 infection. Bull World Health Organ. 2008;86(10):805–12.CrossRefPubMedPubMedCentral
3.
go back to reference Weiss H. Epidemiology of herpes simplex virus type 2 infection in the developing world. National Center for Biotechnology Information. 2004;11:24A–35A. Weiss H. Epidemiology of herpes simplex virus type 2 infection in the developing world. National Center for Biotechnology Information. 2004;11:24A–35A.
4.
go back to reference UNAIDS. Report on global AIDS epidemic. Geneva, Switzeland: UNAIDS/WHO; 2013. UNAIDS. Report on global AIDS epidemic. Geneva, Switzeland: UNAIDS/WHO; 2013.
5.
go back to reference NASCOP. Ministry of Health, Kenya: Kenya AIDS Indicator Survey report. 2012. NASCOP. Ministry of Health, Kenya: Kenya AIDS Indicator Survey report. 2012.
6.
go back to reference NASCOP. Ministry of Health, Kenya: Kenya AIDS Indicator Survey report. 2007. NASCOP. Ministry of Health, Kenya: Kenya AIDS Indicator Survey report. 2007.
7.
go back to reference Ghebremichael M, Larsen U, Painstil E. Association of Age at first sex with HIV-1, HSV-2, and other sexual transmitted infections among women in Northern Tanzania. National Center for Biotechnology Information. 2009;36(9):570–6. Ghebremichael M, Larsen U, Painstil E. Association of Age at first sex with HIV-1, HSV-2, and other sexual transmitted infections among women in Northern Tanzania. National Center for Biotechnology Information. 2009;36(9):570–6.
8.
go back to reference Mishra V, Montana L, Neuman M. Spatial modeling of HIV prevalence in kenya. In: Demographic and Health Research. 2007. Mishra V, Montana L, Neuman M. Spatial modeling of HIV prevalence in kenya. In: Demographic and Health Research. 2007.
10.
go back to reference Hastie T, Tibshirani R. Genaralized additive models for medical research. Stat Methods Res. 1995;4:187.CrossRef Hastie T, Tibshirani R. Genaralized additive models for medical research. Stat Methods Res. 1995;4:187.CrossRef
11.
go back to reference Fotheringham S, Chris B, Martin C. Geographically weighted Regression: the analysis of spatially varying relationships: John Wiley & Sons; 2003. Fotheringham S, Chris B, Martin C. Geographically weighted Regression: the analysis of spatially varying relationships: John Wiley & Sons; 2003.
12.
go back to reference Wheeler D, Waller L. Comparing spatially varying coefficient models: a case study examining violent crime rates and their relationships to alcohol outlets and illegal drug arrests. J Geogr Syst. 2009;11(1):1–22.CrossRef Wheeler D, Waller L. Comparing spatially varying coefficient models: a case study examining violent crime rates and their relationships to alcohol outlets and illegal drug arrests. J Geogr Syst. 2009;11(1):1–22.CrossRef
13.
go back to reference Assunçao RM. Space varying coefficient models for small area data. Environmetrics. 2003;14(5):453–73.CrossRef Assunçao RM. Space varying coefficient models for small area data. Environmetrics. 2003;14(5):453–73.CrossRef
14.
go back to reference Assunçao R, Assunçao J, Lemos M. Induced technical change: a Bayesian spatial varying parameter model. In: Proceedings of XVI Latin American Meeting of the Econometric Society Catholic University of Peru: Lima: 1998. 1998. Assunçao R, Assunçao J, Lemos M. Induced technical change: a Bayesian spatial varying parameter model. In: Proceedings of XVI Latin American Meeting of the Econometric Society Catholic University of Peru: Lima: 1998. 1998.
15.
go back to reference Manda O, Leyland H. An empirical comparison of maximum likelihood and Bayesian estimation methods for multivariate disease mapping. S Afr Stat J. 2007;41(4):1–21. Manda O, Leyland H. An empirical comparison of maximum likelihood and Bayesian estimation methods for multivariate disease mapping. S Afr Stat J. 2007;41(4):1–21.
16.
go back to reference Fahrmeir L, Tutz G. Multivariate Statistical Modelling based on Generalized Linear Models. 2nd ed. New York: Springer; 2001.CrossRef Fahrmeir L, Tutz G. Multivariate Statistical Modelling based on Generalized Linear Models. 2nd ed. New York: Springer; 2001.CrossRef
17.
go back to reference Hastie T, Tibshirani R, Friedman J. The Elements of Statistical Learning. New York: Springer; 2001.CrossRef Hastie T, Tibshirani R, Friedman J. The Elements of Statistical Learning. New York: Springer; 2001.CrossRef
18.
go back to reference Eilers P, Marx B. Flexible smoothing with B-splines and penalties. Stat Sci. 1996;11(2):89–102.CrossRef Eilers P, Marx B. Flexible smoothing with B-splines and penalties. Stat Sci. 1996;11(2):89–102.CrossRef
19.
go back to reference Fahrmeir L, Knorr-Held L. Dynamic and semiparametric models. 1997. Fahrmeir L, Knorr-Held L. Dynamic and semiparametric models. 1997.
20.
go back to reference Fahrmeir L, Lang S. Bayesian inference for generalized additive mixed models based on Markov random field priors. J R Stat Soc: Series C (Appl Stat) 2001;50(2):201–220. Fahrmeir L, Lang S. Bayesian inference for generalized additive mixed models based on Markov random field priors. J R Stat Soc: Series C (Appl Stat) 2001;50(2):201–220.
21.
go back to reference Fahrmeir L, Wagenpfeil S. Smoothing hazard functions and time-varying effects in discrete duration and competing risks models. J Am Stat Assoc. 1996;91(436):1584–94.CrossRef Fahrmeir L, Wagenpfeil S. Smoothing hazard functions and time-varying effects in discrete duration and competing risks models. J Am Stat Assoc. 1996;91(436):1584–94.CrossRef
22.
go back to reference Rue H, Martino S, Chopin N. Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations. J R Stat Soc Ser B (Stat Methodol). 2009;71(2):319–92.CrossRef Rue H, Martino S, Chopin N. Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations. J R Stat Soc Ser B (Stat Methodol). 2009;71(2):319–92.CrossRef
23.
go back to reference Spiegelhalter D, Best N, Carlin B, Van-der-Linde A. Bayesian measures of model complexity and fit. J R Stat Soc Ser B (Stat Methodol). 2002;64:583–639.CrossRef Spiegelhalter D, Best N, Carlin B, Van-der-Linde A. Bayesian measures of model complexity and fit. J R Stat Soc Ser B (Stat Methodol). 2002;64:583–639.CrossRef
24.
go back to reference CBS. Central Bureau of Statistics (CBS) [Kenya], Ministry of Health (MOH) [Kenya], and ORC Macro. 2004. CBS. Central Bureau of Statistics (CBS) [Kenya], Ministry of Health (MOH) [Kenya], and ORC Macro. 2004.
25.
go back to reference Clark S. Early marriage and HIV risks in sub‐Saharan Africa. Stud Fam Plan. 2004;35(3):149–60.CrossRef Clark S. Early marriage and HIV risks in sub‐Saharan Africa. Stud Fam Plan. 2004;35(3):149–60.CrossRef
26.
go back to reference Cohen MS. Sexually transmitted diseases enhance HIV transmission: no longer a hypothesis. The Lancet 351. 1998:S5-S7. Cohen MS. Sexually transmitted diseases enhance HIV transmission: no longer a hypothesis. The Lancet 351. 1998:S5-S7.
27.
go back to reference Burgoyne AD, Drummond PD. Knowledge of HIV and AIDS in women in sub-Saharan Africa. Afr J Reprod Health. 2009;12(2):14–31. Burgoyne AD, Drummond PD. Knowledge of HIV and AIDS in women in sub-Saharan Africa. Afr J Reprod Health. 2009;12(2):14–31.
28.
go back to reference TACAIDS. Ministry of Health, Tanzania; Tanzania HIV/AIDS indicator survey 2011-2012 report. TACAIDS. Ministry of Health, Tanzania; Tanzania HIV/AIDS indicator survey 2011-2012 report.
29.
go back to reference Government of Networks. Ministry of Health, Nairobi, Kenya, Government Printers: 1997 Sessional Paper No.4 of 1997 on AIDS in Kenya. Government of Networks. Ministry of Health, Nairobi, Kenya, Government Printers: 1997 Sessional Paper No.4 of 1997 on AIDS in Kenya.
30.
go back to reference Amornkul PN, Vandenhoudt H, Nasokho P, Odhiambo F, Mwaengo D, Hightower A, Buvé A, Misore A, Vulule J, Vitek C. HIV prevalence and associated risk factors among individuals aged 13-34 years in Rural Western Kenya. PLoS One. 2009;4(7):e6470.CrossRefPubMedPubMedCentral Amornkul PN, Vandenhoudt H, Nasokho P, Odhiambo F, Mwaengo D, Hightower A, Buvé A, Misore A, Vulule J, Vitek C. HIV prevalence and associated risk factors among individuals aged 13-34 years in Rural Western Kenya. PLoS One. 2009;4(7):e6470.CrossRefPubMedPubMedCentral
31.
go back to reference Johnson K, Way A. Risk factors for HIV infection in a national adult population: evidence from the 2003 Kenya Demographic and Health Survey. J Acquir Immune Defic Syndr. 2006;42(5):627-36.CrossRefPubMed Johnson K, Way A. Risk factors for HIV infection in a national adult population: evidence from the 2003 Kenya Demographic and Health Survey. J Acquir Immune Defic Syndr. 2006;42(5):627-36.CrossRefPubMed
32.
go back to reference Speckman PL, Sun D. Fully Bayesian spline smoothing and intrinsic autoregressive priors. Biometrika. 2003;90(2):289–302.CrossRef Speckman PL, Sun D. Fully Bayesian spline smoothing and intrinsic autoregressive priors. Biometrika. 2003;90(2):289–302.CrossRef
33.
go back to reference Lang S, Fronk EM, Fahrmeir L. Function estimation with locally adaptive dynamic models. Comput Stat. 2002;17(4):479–500.CrossRef Lang S, Fronk EM, Fahrmeir L. Function estimation with locally adaptive dynamic models. Comput Stat. 2002;17(4):479–500.CrossRef
34.
go back to reference Yue YR, Speckman PL, Sun D. Priors for Bayesian adaptive spline smoothing. Ann Inst Stat Math. 2012;64(3):577–613.CrossRef Yue YR, Speckman PL, Sun D. Priors for Bayesian adaptive spline smoothing. Ann Inst Stat Math. 2012;64(3):577–613.CrossRef
35.
go back to reference Lindgren F, Rue H. On the second‐order random walk model for irregular locations. Scand J Stat. 2008;35(4):691–700.CrossRef Lindgren F, Rue H. On the second‐order random walk model for irregular locations. Scand J Stat. 2008;35(4):691–700.CrossRef
36.
go back to reference Rue H. Fast sampling of Gaussian Markov random fields. J R Stat Soc Ser B Stat Methodol. 2001:325–338. Rue H. Fast sampling of Gaussian Markov random fields. J R Stat Soc Ser B Stat Methodol. 2001:325–338.
37.
go back to reference Rue H, Held L. Gaussian Markov random fields: theory and applications: CRC Press; 2005. Rue H, Held L. Gaussian Markov random fields: theory and applications: CRC Press; 2005.
38.
go back to reference Banerjee S, Carlin BP, Gelfand AE. Hierarchical modeling and analysis for spatial data: CRC Press; 2014. Banerjee S, Carlin BP, Gelfand AE. Hierarchical modeling and analysis for spatial data: CRC Press; 2014.
39.
go back to reference Besag J. Spatial interaction and the statistical analysis of lattice systems. J R Stat Soc Ser B (Methodol). 1974:192–236. Besag J. Spatial interaction and the statistical analysis of lattice systems. J R Stat Soc Ser B (Methodol). 1974:192–236.
40.
go back to reference Mardia K. Multi-dimensional multivariate Gaussian Markov random fields with application to image processing. J Multivar Anal. 1998;24(2):265–84.CrossRef Mardia K. Multi-dimensional multivariate Gaussian Markov random fields with application to image processing. J Multivar Anal. 1998;24(2):265–84.CrossRef
41.
go back to reference Harville DA. Matrix algebra from a statistician’s perspective, vol. 1: Springer; 1997. Harville DA. Matrix algebra from a statistician’s perspective, vol. 1: Springer; 1997.
Metadata
Title
Spatial modeling of HIV and HSV-2 among women in Kenya with spatially varying coefficients
Authors
Elphas Okango
Henry Mwambi
Oscar Ngesa
Publication date
01-12-2016
Publisher
BioMed Central
Published in
BMC Public Health / Issue 1/2016
Electronic ISSN: 1471-2458
DOI
https://doi.org/10.1186/s12889-016-3022-0

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