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Published in: BMC Medical Genetics 1/2018

Open Access 01-12-2018 | Research article

Compound heterozygous variants in the multiple PDZ domain protein (MPDZ) cause a case of mild non-progressive communicating hydrocephalus

Authors: Nesreen K. Al-Jezawi, Aisha M. Al-Shamsi, Jehan Suleiman, Salma Ben-Salem, Anne John, Ranjit Vijayan, Bassam R. Ali, Lihadh Al-Gazali

Published in: BMC Medical Genetics | Issue 1/2018

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Abstract

Background

Congenital hydrocephalus (CH) results from the accumulation of excessive amounts of cerebrospinal fluid (CSF) in the brain, often leading to severe neurological impairments. However, the adverse effects of CH can be reduced if the condition is detected and treated early. Earlier reports demonstrated that some CH cases are caused by mutations in L1CAM gene encoding the neural cell adhesion molecule L1. On the other hand, recent studies have implicated the multiple PDZ domain (MPDZ) gene in some severe forms of CH, inherited in an autosomal recessive pattern.

Methods

In this study, whole-exome and Sanger sequencing were performed on a 9 months old Emirati child clinically diagnosed by CH. In addition, in silico, cellular, and molecular assays have been conducted to confirm pathogenicity of the identified variants and to establish disease mechanism.

Results

Whole exome sequencing revealed two compound heterozygous novel variants (c.394G > A and c.1744C > G) in the affected child within the MPDZ gene. Segregation analysis revealed that each of the parents is heterozygous for one of the two variants and therefore passed that variant to their child. The outcome of the in silico and bioinformatics analyses came in line with the experimental data, suggesting that the two variants are most likely disease causing.

Conclusions

The compound heterozygous variants identified in this study are the most likely cause of CH in the affected child. The study further confirms MPDZ as a gene underlying some CH cases.
Literature
2.
go back to reference Vintzileos AM, Ingardia CJ, Nochimson DJ. Congenital hydrocephalus: a review and protocol for perinatal management. Obstet Gynecol. 1983;62(5):539–49.PubMed Vintzileos AM, Ingardia CJ, Nochimson DJ. Congenital hydrocephalus: a review and protocol for perinatal management. Obstet Gynecol. 1983;62(5):539–49.PubMed
3.
go back to reference Munch TN, Rostgaard K, Rasmussen MLH, Wohlfahrt J, Juhler M, Melbye M. Familial aggregation of congenital hydrocephalus in a nationwide cohort. Brain. 2012;135(8):2409–15.CrossRefPubMed Munch TN, Rostgaard K, Rasmussen MLH, Wohlfahrt J, Juhler M, Melbye M. Familial aggregation of congenital hydrocephalus in a nationwide cohort. Brain. 2012;135(8):2409–15.CrossRefPubMed
4.
go back to reference Schrander-Stumpel C, Fryns JP. Congenital hydrocephalus: nosology and guidelines for clinical approach and genetic counselling. Eur J Pediatr. 1998;157(5):355–62.CrossRefPubMed Schrander-Stumpel C, Fryns JP. Congenital hydrocephalus: nosology and guidelines for clinical approach and genetic counselling. Eur J Pediatr. 1998;157(5):355–62.CrossRefPubMed
5.
go back to reference Abdul-Karim R, Iliya F, Iskandar G. Consecutive hydrocephalus: report of two cases. Obstet Gynecol. 1964;24:376–8.CrossRefPubMed Abdul-Karim R, Iliya F, Iskandar G. Consecutive hydrocephalus: report of two cases. Obstet Gynecol. 1964;24:376–8.CrossRefPubMed
6.
go back to reference Lapunzina P, Delicado A, De Torres ML, Mori MA, Perez-Pacheco RF, Lopez Pajares I. Autosomal recessive hydrocephalus due to aqueduct stenosis: report of a further family and implications for genetic counselling. J Matern Fetal Med. 2002;12(1):64–6.CrossRef Lapunzina P, Delicado A, De Torres ML, Mori MA, Perez-Pacheco RF, Lopez Pajares I. Autosomal recessive hydrocephalus due to aqueduct stenosis: report of a further family and implications for genetic counselling. J Matern Fetal Med. 2002;12(1):64–6.CrossRef
7.
go back to reference Barros-Nunes P, Rivas F. Autosomal recessive congenital stenosis of aqueduct of Sylvius. Genet Couns. 1993;4(1):19–23.PubMed Barros-Nunes P, Rivas F. Autosomal recessive congenital stenosis of aqueduct of Sylvius. Genet Couns. 1993;4(1):19–23.PubMed
8.
go back to reference Petrus M, Dutau G, Rochiccioli P. Autosomal recessive inheritance of hydrocephalus with Sylvius aqueductal stenosis. J Genet Hum. 1981;29(2):155–60.PubMed Petrus M, Dutau G, Rochiccioli P. Autosomal recessive inheritance of hydrocephalus with Sylvius aqueductal stenosis. J Genet Hum. 1981;29(2):155–60.PubMed
9.
go back to reference Hamada H, Watanabe H, Sugimoto M, Yasuoka M, Yamada N, Kubo T. Autosomal recessive hydrocephalus due to congenital stenosis of the aqueduct of Sylvius. Prenat Diagn. 1999;19(11):1067–9.CrossRefPubMed Hamada H, Watanabe H, Sugimoto M, Yasuoka M, Yamada N, Kubo T. Autosomal recessive hydrocephalus due to congenital stenosis of the aqueduct of Sylvius. Prenat Diagn. 1999;19(11):1067–9.CrossRefPubMed
10.
go back to reference Vos YJ, De Walle HEK, Bos KK, Stegeman JA, Ten Berge AM, Bruining M, Van Maarle MC, Elting MW, Den Hollander NS, Hamel B, et al. Genotype - phenotype correlations in L1 syndrome: a guide for genetic counselling and mutation analysis. J Med Genet. 2010;47(3):169–75.CrossRefPubMed Vos YJ, De Walle HEK, Bos KK, Stegeman JA, Ten Berge AM, Bruining M, Van Maarle MC, Elting MW, Den Hollander NS, Hamel B, et al. Genotype - phenotype correlations in L1 syndrome: a guide for genetic counselling and mutation analysis. J Med Genet. 2010;47(3):169–75.CrossRefPubMed
11.
go back to reference Saillour Y, Zanni G, Des Portes V, Heron D, Guibaud L, Iba-Zizen MT, Pedespan JL, Poirier K, Castelnau L, Julien C, et al. Mutations in the AP1S2 gene encoding the sigma 2 subunit of the adaptor protein 1 complex are associated with syndromic X-linked mental retardation with hydrocephalus and calcifications in basal ganglia. J Med Genet. 2007;44(11):739–44.CrossRefPubMedPubMedCentral Saillour Y, Zanni G, Des Portes V, Heron D, Guibaud L, Iba-Zizen MT, Pedespan JL, Poirier K, Castelnau L, Julien C, et al. Mutations in the AP1S2 gene encoding the sigma 2 subunit of the adaptor protein 1 complex are associated with syndromic X-linked mental retardation with hydrocephalus and calcifications in basal ganglia. J Med Genet. 2007;44(11):739–44.CrossRefPubMedPubMedCentral
12.
go back to reference Al-Dosari MS, Al-Owain M, Tulbah M, Kurdi W, Adly N, Al-Hemidan A, Masoodi TA, Albash B, Alkuraya FS. Mutation in MPDZ causes severe congenital hydrocephalus. J Med Genet. 2013;50(1):54–8.CrossRefPubMed Al-Dosari MS, Al-Owain M, Tulbah M, Kurdi W, Adly N, Al-Hemidan A, Masoodi TA, Albash B, Alkuraya FS. Mutation in MPDZ causes severe congenital hydrocephalus. J Med Genet. 2013;50(1):54–8.CrossRefPubMed
13.
go back to reference Saugier-Veber P, Marguet F, Lecoquierre F, Adle-Biassette H, Guimiot F, Cipriani S, Patrier S, Brasseur-Daudruy M, Goldenberg A, Layet V, et al. Hydrocephalus due to multiple ependymal malformations is caused by mutations in the MPDZ gene. Acta Neuropathol Commun. 2017;5(1):36.CrossRefPubMedPubMedCentral Saugier-Veber P, Marguet F, Lecoquierre F, Adle-Biassette H, Guimiot F, Cipriani S, Patrier S, Brasseur-Daudruy M, Goldenberg A, Layet V, et al. Hydrocephalus due to multiple ependymal malformations is caused by mutations in the MPDZ gene. Acta Neuropathol Commun. 2017;5(1):36.CrossRefPubMedPubMedCentral
14.
go back to reference Fehr C, Shirley RL, Metten P, Kosobud AEK, Belknap JK, Crabbet JC, Buck KJ. Potential pleiotropic effects of Mpdz on vulnerability to seizures. Genes Brain Behav. 2004;3(1):8–19.CrossRefPubMed Fehr C, Shirley RL, Metten P, Kosobud AEK, Belknap JK, Crabbet JC, Buck KJ. Potential pleiotropic effects of Mpdz on vulnerability to seizures. Genes Brain Behav. 2004;3(1):8–19.CrossRefPubMed
15.
go back to reference Ackermann F, Zitranski N, Borth H, Buech T, Gudermann T, Boekhoff I. CaMKIIalpha interacts with multi-PDZ domain protein MUPP1 in spermatozoa and prevents spontaneous acrosomal exocytosis. J Cell Sci. 2009;122(Pt 24):4547–57.CrossRefPubMed Ackermann F, Zitranski N, Borth H, Buech T, Gudermann T, Boekhoff I. CaMKIIalpha interacts with multi-PDZ domain protein MUPP1 in spermatozoa and prevents spontaneous acrosomal exocytosis. J Cell Sci. 2009;122(Pt 24):4547–57.CrossRefPubMed
16.
go back to reference Ali M, Hocking PM, McKibbin M, Finnegan S, Shires M, Poulter JA, Prescott K, Booth A, Raashid Y, Jafri H, et al. Mpdz null allele in an avian model of retinal degeneration and mutations in human leber congenital amaurosis and retinitis pigmentosa. Invest Ophthalmol Vis Sci. 2011;52(10):7432–40.CrossRefPubMed Ali M, Hocking PM, McKibbin M, Finnegan S, Shires M, Poulter JA, Prescott K, Booth A, Raashid Y, Jafri H, et al. Mpdz null allele in an avian model of retinal degeneration and mutations in human leber congenital amaurosis and retinitis pigmentosa. Invest Ophthalmol Vis Sci. 2011;52(10):7432–40.CrossRefPubMed
17.
go back to reference Hamazaki Y, Itoh M, Sasaki H, Furuse M, Tsukita S. Multi-PDZ domain protein 1 (MUPP1) is concentrated at tight junctions through its possible interaction with claudin-1 and junctional adhesion molecule. J Biol Chem. 2002;277(1):455–61.CrossRefPubMed Hamazaki Y, Itoh M, Sasaki H, Furuse M, Tsukita S. Multi-PDZ domain protein 1 (MUPP1) is concentrated at tight junctions through its possible interaction with claudin-1 and junctional adhesion molecule. J Biol Chem. 2002;277(1):455–61.CrossRefPubMed
18.
go back to reference Richards CS, Bale S, Bellissimo DB, Das S, Grody WW, Hegde MR, Lyon E, Ward BEACMG. Recommendations for standards for interpretation and reporting of sequence variations: revisions 2007. Genet Med. 2008;10(4):294–300.CrossRefPubMed Richards CS, Bale S, Bellissimo DB, Das S, Grody WW, Hegde MR, Lyon E, Ward BEACMG. Recommendations for standards for interpretation and reporting of sequence variations: revisions 2007. Genet Med. 2008;10(4):294–300.CrossRefPubMed
21.
22.
go back to reference Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. A method and server for predicting damaging missense mutations. Nat Methods. 2010;7(4):248–9.CrossRefPubMedPubMedCentral Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR. A method and server for predicting damaging missense mutations. Nat Methods. 2010;7(4):248–9.CrossRefPubMedPubMedCentral
23.
go back to reference Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc. 2009;4(7):1073–82.CrossRefPubMed Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc. 2009;4(7):1073–82.CrossRefPubMed
24.
go back to reference Schwarz JM, Rodelsperger C, Schuelke M, Seelow D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods. 2010;7(8):575–6.CrossRefPubMed Schwarz JM, Rodelsperger C, Schuelke M, Seelow D. MutationTaster evaluates disease-causing potential of sequence alterations. Nat Methods. 2010;7(8):575–6.CrossRefPubMed
25.
go back to reference Sim NL, Kumar P, Hu J, Henikoff S, Schneider G, Ng PC. SIFT web server: predicting effects of amino acid substitutions on proteins. Nucleic Acids Res. 2012;40(W1):W452–7.CrossRefPubMedPubMedCentral Sim NL, Kumar P, Hu J, Henikoff S, Schneider G, Ng PC. SIFT web server: predicting effects of amino acid substitutions on proteins. Nucleic Acids Res. 2012;40(W1):W452–7.CrossRefPubMedPubMedCentral
26.
go back to reference Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG. Primer3--new capabilities and interfaces. Nucleic Acids Res. 2012;40(15):e115.CrossRefPubMedPubMedCentral Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG. Primer3--new capabilities and interfaces. Nucleic Acids Res. 2012;40(15):e115.CrossRefPubMedPubMedCentral
27.
go back to reference Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Soding J, et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal omega. Mol Syst Biol. 2011;7:539.CrossRefPubMedPubMedCentral Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Soding J, et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal omega. Mol Syst Biol. 2011;7:539.CrossRefPubMedPubMedCentral
28.
go back to reference Deguillien M, Huang SC, Moriniere M, Dreumont N, Benz EJ Jr, Baklouti F. Multiple cis elements regulate an alternative splicing event at 4.1R pre-mRNA during erythroid differentiation. Blood. 2001;98(13):3809–16.CrossRefPubMed Deguillien M, Huang SC, Moriniere M, Dreumont N, Benz EJ Jr, Baklouti F. Multiple cis elements regulate an alternative splicing event at 4.1R pre-mRNA during erythroid differentiation. Blood. 2001;98(13):3809–16.CrossRefPubMed
29.
30.
go back to reference Reese MG, Eeckman FH, Kulp D, Haussler D. Improved splice site detection in genie. J Comput Biol. 1997;4(3):311–23.CrossRefPubMed Reese MG, Eeckman FH, Kulp D, Haussler D. Improved splice site detection in genie. J Comput Biol. 1997;4(3):311–23.CrossRefPubMed
31.
go back to reference Poliak S, Matlis S, Ullmer C, Scherer SS, Peles E. Distinct claudins and associated PDZ proteins form different autotypic tight junctions in myelinating Schwann cells. J Cell Biol. 2002;159(2):361–71.CrossRefPubMedPubMedCentral Poliak S, Matlis S, Ullmer C, Scherer SS, Peles E. Distinct claudins and associated PDZ proteins form different autotypic tight junctions in myelinating Schwann cells. J Cell Biol. 2002;159(2):361–71.CrossRefPubMedPubMedCentral
32.
go back to reference Liu Z, Fenech C, Cadiou H, Grall S, Tili E, Laugerette F, Wiencis A, Grosmaitre X, Montmayeur JP. Identification of new binding partners of the chemosensory signaling protein Ggamma13 expressed in taste and olfactory sensory cells. Front Cell Neurosci. 2012;6:26.PubMedPubMedCentral Liu Z, Fenech C, Cadiou H, Grall S, Tili E, Laugerette F, Wiencis A, Grosmaitre X, Montmayeur JP. Identification of new binding partners of the chemosensory signaling protein Ggamma13 expressed in taste and olfactory sensory cells. Front Cell Neurosci. 2012;6:26.PubMedPubMedCentral
33.
go back to reference Ullmer C, Schmuck K, Figge A, Lübbert H. Cloning and characterization of MUPP1, a novel PDZ domain protein. FEBS Lett. 1998;424(1–2):63–8.CrossRefPubMed Ullmer C, Schmuck K, Figge A, Lübbert H. Cloning and characterization of MUPP1, a novel PDZ domain protein. FEBS Lett. 1998;424(1–2):63–8.CrossRefPubMed
34.
go back to reference Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, ExPASy BA. The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 2003;31(13):3784–8.CrossRefPubMedPubMedCentral Gasteiger E, Gattiker A, Hoogland C, Ivanyi I, Appel RD, ExPASy BA. The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 2003;31(13):3784–8.CrossRefPubMedPubMedCentral
36.
go back to reference Grootjans JJ, Reekmans G, Ceulemans H, David G. Syntenin-syndecan binding requires syndecan-synteny and the co-operation of both PDZ domains of syntenin. J Biol Chem. 2000;275(26):19933–41.CrossRefPubMed Grootjans JJ, Reekmans G, Ceulemans H, David G. Syntenin-syndecan binding requires syndecan-synteny and the co-operation of both PDZ domains of syntenin. J Biol Chem. 2000;275(26):19933–41.CrossRefPubMed
37.
go back to reference Desviat LR, Perez B, Ugarte M. Minigenes to confirm exon skipping mutations. Methods Mol Biol. 2012;867:37–47.CrossRefPubMed Desviat LR, Perez B, Ugarte M. Minigenes to confirm exon skipping mutations. Methods Mol Biol. 2012;867:37–47.CrossRefPubMed
38.
go back to reference Hung AY, Sheng MPDZ. Domains: structural modules for protein complex assembly. J Biol Chem. 2002;277(8):5699–702.CrossRefPubMed Hung AY, Sheng MPDZ. Domains: structural modules for protein complex assembly. J Biol Chem. 2002;277(8):5699–702.CrossRefPubMed
39.
go back to reference Tsukamoto K, Wales TE, Daniels K, Pal R, Sheng R, Cho W, Stafford W, Engen JR, Krieger M, Kocher O. Noncanonical role of the PDZ4 domain of the adaptor protein PDZK1 in the regulation of the hepatic high density lipoprotein receptor scavenger receptor class B, type i (SR-BI). J Biol Chem. 2013;288(27):19845–60.CrossRefPubMedPubMedCentral Tsukamoto K, Wales TE, Daniels K, Pal R, Sheng R, Cho W, Stafford W, Engen JR, Krieger M, Kocher O. Noncanonical role of the PDZ4 domain of the adaptor protein PDZK1 in the regulation of the hepatic high density lipoprotein receptor scavenger receptor class B, type i (SR-BI). J Biol Chem. 2013;288(27):19845–60.CrossRefPubMedPubMedCentral
40.
go back to reference Clamp M, Cuff J, Searle SM, Barton GJ. The Jalview java alignment. Bioinformatics. 2004;20(3):426–7.CrossRefPubMed Clamp M, Cuff J, Searle SM, Barton GJ. The Jalview java alignment. Bioinformatics. 2004;20(3):426–7.CrossRefPubMed
Metadata
Title
Compound heterozygous variants in the multiple PDZ domain protein (MPDZ) cause a case of mild non-progressive communicating hydrocephalus
Authors
Nesreen K. Al-Jezawi
Aisha M. Al-Shamsi
Jehan Suleiman
Salma Ben-Salem
Anne John
Ranjit Vijayan
Bassam R. Ali
Lihadh Al-Gazali
Publication date
01-12-2018
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2018
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/s12881-018-0540-x

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