Skip to main content
Top
Published in: BMC Medical Genetics 1/2014

Open Access 01-12-2014 | Research article

A novel AP4M1 mutation in autosomal recessive cerebral palsy syndrome and clinical expansion of AP-4 deficiency

Authors: Muhammad Jameel, Joakim Klar, Muhammad Tariq, Abubakar Moawia, Naveed Altaf Malik, Syeda Seema Waseem, Uzma Abdullah, Tahir Naeem Khan, Raili Raininko, Shahid Mahmood Baig, Niklas Dahl

Published in: BMC Medical Genetics | Issue 1/2014

Login to get access

Abstract

Background

Cerebral palsy (CP) is a heterogeneous neurodevelopmental disorder associated with intellectual disability in one-third of cases. Recent findings support Mendelian inheritance in subgroups of patients with the disease. The purpose of this study was to identify a novel genetic cause of paraplegic CP with intellectual disability in a consanguineous Pakistani family.

Methods

We performed whole-exome sequencing (WES) in two brothers with CP and intellectual disability. Analysis of AP4M1 mRNA was performed using quantitative real-time PCR on total RNA from cultured fibroblasts. The brothers were investigated clinically and by MRI.

Results

We identified a novel homozygous AP4M1 mutation c.194_195delAT, p.Y65Ffs*50 in the affected brothers. Quantitative RT-PCR analysis showed markedly reduced AP4M1 mRNA levels suggesting partial non-sense mediated mRNA decay. Several clinical and MRI features were consistent with AP-4 complex deficiency. However, in contrast to previously reported cases with AP4M1 mutations our patients show an aggressive behavior and a relatively late onset of disease.

Conclusion

This study shows an AP4M1 mutation associated with aggressive behavior in addition to mild dysmorphic features, intellectual disability, spastic paraparesis and reduced head circumference. Our findings expand the clinical spectrum associated with AP-4 complex deficiency and the study illustrates the importance of MRI and WES in the diagnosis of patients with CP and intellectual disability.
Appendix
Available only for authorised users
Literature
1.
go back to reference Clark SL, Hankins GD: Temporal and demographic trends in cerebral palsy–fact and fiction. Am J Obstet Gynecol. 2003, 188 (3): 628-633. 10.1067/mob.2003.204.CrossRefPubMed Clark SL, Hankins GD: Temporal and demographic trends in cerebral palsy–fact and fiction. Am J Obstet Gynecol. 2003, 188 (3): 628-633. 10.1067/mob.2003.204.CrossRefPubMed
2.
go back to reference Pakula AT, Van Naarden BK, Yeargin-Allsopp M: Cerebral palsy: classification and epidemiology. Phys Med Rehabil Clin N Am. 2009, 20 (3): 425-452. 10.1016/j.pmr.2009.06.001.CrossRefPubMed Pakula AT, Van Naarden BK, Yeargin-Allsopp M: Cerebral palsy: classification and epidemiology. Phys Med Rehabil Clin N Am. 2009, 20 (3): 425-452. 10.1016/j.pmr.2009.06.001.CrossRefPubMed
3.
go back to reference Costeff H: Estimated frequency of genetic and nongenetic causes of congenital idiopathic cerebral palsy in west Sweden. Ann Hum Genet. 2004, 68 (Pt 5): 515-520. 10.1046/j.1529-8817.2004.00105.x.CrossRefPubMed Costeff H: Estimated frequency of genetic and nongenetic causes of congenital idiopathic cerebral palsy in west Sweden. Ann Hum Genet. 2004, 68 (Pt 5): 515-520. 10.1046/j.1529-8817.2004.00105.x.CrossRefPubMed
4.
go back to reference Graham EM, Ruis KA, Hartman AL, Northington FJ, Fox HE: A systematic review of the role of intrapartum hypoxia-ischemia in the causation of neonatal encephalopathy. Am J Obstet Gynecol. 2008, 199 (6): 587-595. 10.1016/j.ajog.2008.06.094.CrossRefPubMed Graham EM, Ruis KA, Hartman AL, Northington FJ, Fox HE: A systematic review of the role of intrapartum hypoxia-ischemia in the causation of neonatal encephalopathy. Am J Obstet Gynecol. 2008, 199 (6): 587-595. 10.1016/j.ajog.2008.06.094.CrossRefPubMed
5.
go back to reference Petterson B, Stanley F, Henderson D: Cerebral palsy in multiple births in Western Australia: genetic aspects. Am J Med Genet. 1990, 37 (3): 346-351. 10.1002/ajmg.1320370311.CrossRefPubMed Petterson B, Stanley F, Henderson D: Cerebral palsy in multiple births in Western Australia: genetic aspects. Am J Med Genet. 1990, 37 (3): 346-351. 10.1002/ajmg.1320370311.CrossRefPubMed
6.
go back to reference Blair E, Al Asedy F, Badawi N, Bower C: Is cerebral palsy associated with birth defects other than cerebral defects?. Dev Med Child Neurol. 2007, 49 (4): 252-258. 10.1111/j.1469-8749.2007.00252.x.CrossRefPubMed Blair E, Al Asedy F, Badawi N, Bower C: Is cerebral palsy associated with birth defects other than cerebral defects?. Dev Med Child Neurol. 2007, 49 (4): 252-258. 10.1111/j.1469-8749.2007.00252.x.CrossRefPubMed
7.
go back to reference Garne E, Dolk H, Krageloh-Mann I, Holst Ravn S, Cans C: Cerebral palsy and congenital malformations. Eur J Paediatr Neurol. 2008, 12 (2): 82-88. 10.1016/j.ejpn.2007.07.001.CrossRefPubMed Garne E, Dolk H, Krageloh-Mann I, Holst Ravn S, Cans C: Cerebral palsy and congenital malformations. Eur J Paediatr Neurol. 2008, 12 (2): 82-88. 10.1016/j.ejpn.2007.07.001.CrossRefPubMed
8.
go back to reference Moreno-De-Luca A, Helmers SL, Mao H, Burns TG, Melton AM, Schmidt KR, Fernhoff PM, Ledbetter DH, Martin CL: Adaptor protein complex-4 (AP-4) deficiency causes a novel autosomal recessive cerebral palsy syndrome with microcephaly and intellectual disability. J Med Genet. 2011, 48 (2): 141-144. 10.1136/jmg.2010.082263.CrossRefPubMed Moreno-De-Luca A, Helmers SL, Mao H, Burns TG, Melton AM, Schmidt KR, Fernhoff PM, Ledbetter DH, Martin CL: Adaptor protein complex-4 (AP-4) deficiency causes a novel autosomal recessive cerebral palsy syndrome with microcephaly and intellectual disability. J Med Genet. 2011, 48 (2): 141-144. 10.1136/jmg.2010.082263.CrossRefPubMed
9.
go back to reference Hirst J, Irving C, Borner GH: Adaptor protein complexes AP-4 and AP-5: new players in endosomal trafficking and progressive spastic paraplegia. Traffic. 2013, 14 (2): 153-164. 10.1111/tra.12028.CrossRefPubMed Hirst J, Irving C, Borner GH: Adaptor protein complexes AP-4 and AP-5: new players in endosomal trafficking and progressive spastic paraplegia. Traffic. 2013, 14 (2): 153-164. 10.1111/tra.12028.CrossRefPubMed
10.
go back to reference Matsuda S, Yuzaki M: Polarized sorting of AMPA receptors to the somatodendritic domain is regulated by adaptor protein AP-4. Neurosci Res. 2009, 65 (1): 1-5. 10.1016/j.neures.2009.05.007.CrossRefPubMed Matsuda S, Yuzaki M: Polarized sorting of AMPA receptors to the somatodendritic domain is regulated by adaptor protein AP-4. Neurosci Res. 2009, 65 (1): 1-5. 10.1016/j.neures.2009.05.007.CrossRefPubMed
11.
go back to reference Abdollahpour H, Alawi M, Kortum F, Beckstette M, Seemanova E, Komarek V, Rosenberger G, Kutsche K: An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome. Eur J Hum Genet 2014, Advance online publication., Abdollahpour H, Alawi M, Kortum F, Beckstette M, Seemanova E, Komarek V, Rosenberger G, Kutsche K: An AP4B1 frameshift mutation in siblings with intellectual disability and spastic tetraplegia further delineates the AP-4 deficiency syndrome. Eur J Hum Genet 2014, Advance online publication.,
12.
go back to reference Abou Jamra R, Philippe O, Raas-Rothschild A, Eck SH, Graf E, Buchert R, Borck G, Ekici A, Brockschmidt FF, Nothen MM, Munnich A, Strom TM, Reis A, Colleaux L: Adaptor protein complex 4 deficiency causes severe autosomal-recessive intellectual disability, progressive spastic paraplegia, shy character, and short stature. Am J Hum Genet. 2011, 88 (6): 788-795. 10.1016/j.ajhg.2011.04.019.CrossRefPubMedPubMedCentral Abou Jamra R, Philippe O, Raas-Rothschild A, Eck SH, Graf E, Buchert R, Borck G, Ekici A, Brockschmidt FF, Nothen MM, Munnich A, Strom TM, Reis A, Colleaux L: Adaptor protein complex 4 deficiency causes severe autosomal-recessive intellectual disability, progressive spastic paraplegia, shy character, and short stature. Am J Hum Genet. 2011, 88 (6): 788-795. 10.1016/j.ajhg.2011.04.019.CrossRefPubMedPubMedCentral
13.
go back to reference Najmabadi H, Hu H, Garshasbi M, Zemojtel T, Abedini SS, Chen W, Hosseini M, Behjati F, Haas S, Jamali P, Zecha A, Mohseni M, Püttmann L, Vahid LN, Jensen C, Moheb LA, Bienek M, Larti F, Mueller I, Weissmann R, Darvish H, Wrogemann K, Hadavi V, Lipkowitz B, Esmaeeli-Nieh S, Wieczorek D, Kariminejad R, Firouzabadi SG, Cohen M, Fattahi Z: Deep sequencing reveals 50 novel genes for recessive cognitive disorders. Nature. 2011, 478 (7367): 57-63. 10.1038/nature10423.CrossRefPubMed Najmabadi H, Hu H, Garshasbi M, Zemojtel T, Abedini SS, Chen W, Hosseini M, Behjati F, Haas S, Jamali P, Zecha A, Mohseni M, Püttmann L, Vahid LN, Jensen C, Moheb LA, Bienek M, Larti F, Mueller I, Weissmann R, Darvish H, Wrogemann K, Hadavi V, Lipkowitz B, Esmaeeli-Nieh S, Wieczorek D, Kariminejad R, Firouzabadi SG, Cohen M, Fattahi Z: Deep sequencing reveals 50 novel genes for recessive cognitive disorders. Nature. 2011, 478 (7367): 57-63. 10.1038/nature10423.CrossRefPubMed
14.
go back to reference Tuysuz B, Bilguvar K, Kocer N, Yalcinkaya C, Caglayan O, Gul E, Sahin S, Comu S, Gunel M: Autosomal recessive spastic tetraplegia caused by AP4M1 and AP4B1 gene mutation: Expansion of the facial and neuroimaging features. Am J Med Genet A. 2014, 164: 1677-1685. 10.1002/ajmg.a.36514.CrossRef Tuysuz B, Bilguvar K, Kocer N, Yalcinkaya C, Caglayan O, Gul E, Sahin S, Comu S, Gunel M: Autosomal recessive spastic tetraplegia caused by AP4M1 and AP4B1 gene mutation: Expansion of the facial and neuroimaging features. Am J Med Genet A. 2014, 164: 1677-1685. 10.1002/ajmg.a.36514.CrossRef
15.
go back to reference Verkerk AJ, Schot R, Dumee B, Schellekens K, Swagemakers S, Bertoli-Avella AM, Lequin MH, Dudink J, Govaert P, van Zwol AL, Hirst J, Wessels MW, Catsman-Berrevoets C, Verheijen FW, de Graaff E, de Coo IF, Kros JM, Willemsen R, Willems PJ, van der Spek PJ, Mancini GM: Mutation in the AP4M1 gene provides a model for neuroaxonal injury in cerebral palsy. Am J Hum Genet. 2009, 85 (1): 40-52. 10.1016/j.ajhg.2009.06.004.CrossRefPubMedPubMedCentral Verkerk AJ, Schot R, Dumee B, Schellekens K, Swagemakers S, Bertoli-Avella AM, Lequin MH, Dudink J, Govaert P, van Zwol AL, Hirst J, Wessels MW, Catsman-Berrevoets C, Verheijen FW, de Graaff E, de Coo IF, Kros JM, Willemsen R, Willems PJ, van der Spek PJ, Mancini GM: Mutation in the AP4M1 gene provides a model for neuroaxonal injury in cerebral palsy. Am J Hum Genet. 2009, 85 (1): 40-52. 10.1016/j.ajhg.2009.06.004.CrossRefPubMedPubMedCentral
16.
go back to reference Khan TN, Klar J, Tariq M, Anjum Baig S, Malik NA, Yousaf R, Baig SM, Dahl N: Evidence for autosomal recessive inheritance in SPG3A caused by homozygosity for a novel ATL1 missense mutation. Eur J Hum Genet. 2014, 22: 1180-1184. 10.1038/ejhg.2014.5.CrossRefPubMedPubMedCentral Khan TN, Klar J, Tariq M, Anjum Baig S, Malik NA, Yousaf R, Baig SM, Dahl N: Evidence for autosomal recessive inheritance in SPG3A caused by homozygosity for a novel ATL1 missense mutation. Eur J Hum Genet. 2014, 22: 1180-1184. 10.1038/ejhg.2014.5.CrossRefPubMedPubMedCentral
17.
go back to reference Wang K, Li M, Hakonarson H: ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010, 38 (16): e164-10.1093/nar/gkq603.CrossRefPubMedPubMedCentral Wang K, Li M, Hakonarson H: ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 2010, 38 (16): e164-10.1093/nar/gkq603.CrossRefPubMedPubMedCentral
18.
go back to reference Rossi V, Banfield DK, Vacca M, Dietrich LE, Ungermann C, D’Esposito M, Galli T, Filippini F: Longins and their longin domains: regulated SNAREs and multifunctional SNARE regulators. Trends Biochem Sci. 2004, 29 (12): 682-688. 10.1016/j.tibs.2004.10.002.CrossRefPubMed Rossi V, Banfield DK, Vacca M, Dietrich LE, Ungermann C, D’Esposito M, Galli T, Filippini F: Longins and their longin domains: regulated SNAREs and multifunctional SNARE regulators. Trends Biochem Sci. 2004, 29 (12): 682-688. 10.1016/j.tibs.2004.10.002.CrossRefPubMed
19.
go back to reference Xiao J, Nance MA, LeDoux MS: Incomplete nonsense-mediated decay facilitates detection of a multi-exonic deletion mutation in SGCE. Clin Genet. 2013, 84 (3): 276-280. 10.1111/cge.12059.CrossRefPubMed Xiao J, Nance MA, LeDoux MS: Incomplete nonsense-mediated decay facilitates detection of a multi-exonic deletion mutation in SGCE. Clin Genet. 2013, 84 (3): 276-280. 10.1111/cge.12059.CrossRefPubMed
20.
go back to reference Magyar I, Colman D, Arnold E, Baumgartner D, Bottani A, Fokstuen S, Addor MC, Berger W, Carrel T, Steinmann B, Mátyás G: Quantitative sequence analysis of FBN1 premature termination codons provides evidence for incomplete NMD in leukocytes. Hum Mutat. 2009, 30 (9): 1355-1364. 10.1002/humu.21058.CrossRefPubMed Magyar I, Colman D, Arnold E, Baumgartner D, Bottani A, Fokstuen S, Addor MC, Berger W, Carrel T, Steinmann B, Mátyás G: Quantitative sequence analysis of FBN1 premature termination codons provides evidence for incomplete NMD in leukocytes. Hum Mutat. 2009, 30 (9): 1355-1364. 10.1002/humu.21058.CrossRefPubMed
21.
go back to reference Owen DJ, Evans PR: A structural explanation for the recognition of tyrosine-based endocytotic signals. Science. 1998, 282 (5392): 1327-1332. 10.1126/science.282.5392.1327.CrossRefPubMed Owen DJ, Evans PR: A structural explanation for the recognition of tyrosine-based endocytotic signals. Science. 1998, 282 (5392): 1327-1332. 10.1126/science.282.5392.1327.CrossRefPubMed
Metadata
Title
A novel AP4M1 mutation in autosomal recessive cerebral palsy syndrome and clinical expansion of AP-4 deficiency
Authors
Muhammad Jameel
Joakim Klar
Muhammad Tariq
Abubakar Moawia
Naveed Altaf Malik
Syeda Seema Waseem
Uzma Abdullah
Tahir Naeem Khan
Raili Raininko
Shahid Mahmood Baig
Niklas Dahl
Publication date
01-12-2014
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2014
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/s12881-014-0133-2

Other articles of this Issue 1/2014

BMC Medical Genetics 1/2014 Go to the issue