Skip to main content
Top
Published in: BMC Infectious Diseases 1/2018

Open Access 01-12-2018 | Research article

Virologic suppression in response to antiretroviral therapy despite extensive resistance within HIV-1 reverse transcriptase after the first virologic failure

Authors: Marta Iglis Oliveira, Valter Romão de Souza Junior, Claudia Fernanda de Lacerda Vidal, Paulo Sérgio Ramos de Araújo

Published in: BMC Infectious Diseases | Issue 1/2018

Login to get access

Abstract

Background

Incomplete virologic suppression results in mutations associated with resistance and is a major obstacle to disease control. We analyzed the genotypic profiles of HIV-1 patients at the time of the first virologic failure and the response to a salvage regimen after 48 weeks.

Methods

This work was a cross-sectional, retrospective, analytical study based on data collected from medical records and genotyping tests between 2006 and 2016. The sample consisted of data on individuals living with HIV (PLWH) from three major reference centers.

Results

A total of 184 patients were included in the data analysis. Viral subtype B was the most common (81.3%) as well as M184 V/I (85.3%) and K103 codon mutations (65.8%). Forty-eight weeks after switching to a salvage regimen, 67.3% of patients achieved an undetectable viral load.

Discussion

The number of mutations associated with nucleos(t)ide reverse transcriptase inhibitors (NRTI(t)s) did not affect virologic suppression (9.3% for zero NRTI(t)-associated mutations vs 48.6% for 1–2 NRTI(t)-associated mutations vs 42.1% for ≥3 NRTI(t)-associated mutations, p = 0.179). An ARV time (the beginning of the first ARV regimen up to genotyping) of > 36 months was a protective factor for detectable viral load (PR = 0.60, 95% CI = 0.39–0.92, p = 0.020) and a risk factor for developing ≥3 NRTI(t)-associated mutations (PR = 2.43, 95% CI 1.38–4.28, p = 0.002).

Conclusions

We found that extensive resistance to NRTI(t)s at the time of the first virologic failure did not impact virologic suppression at 48 weeks after switching to a second-line therapy based on NRTI(t)s plus protease inhibitors.
Literature
2.
go back to reference Strategies for Management of Antiretroviral Therapy (SMART) Study Group, El- Sadr WM, Lundgren J, Neaton JD, et al. CD4+ count-guided interruption of antiretroviral treatment. N Engl J Med. 2006;355:2283–96.CrossRef Strategies for Management of Antiretroviral Therapy (SMART) Study Group, El- Sadr WM, Lundgren J, Neaton JD, et al. CD4+ count-guided interruption of antiretroviral treatment. N Engl J Med. 2006;355:2283–96.CrossRef
3.
go back to reference Rodger AJ, Cambiano V, Bruun T, et al. PARTNER study group. Sexual activity without condoms and risk of hiv transmission in serodifferent couples when the HIV- positive partner is using suppressive antiretroviral therapy. JAMA. 2016;316(2):171–81.CrossRef Rodger AJ, Cambiano V, Bruun T, et al. PARTNER study group. Sexual activity without condoms and risk of hiv transmission in serodifferent couples when the HIV- positive partner is using suppressive antiretroviral therapy. JAMA. 2016;316(2):171–81.CrossRef
5.
go back to reference Campbell TB, Smeaton LM, Kumarasamy N, et al. Efficacy and safety of three antiretroviral regimens for initial treatment of HIV-1: a randomized clinical trial in diverse multinational settings. PLoS Med 2012; 9:e1001290. [sPubMed: 22936892].CrossRef Campbell TB, Smeaton LM, Kumarasamy N, et al. Efficacy and safety of three antiretroviral regimens for initial treatment of HIV-1: a randomized clinical trial in diverse multinational settings. PLoS Med 2012; 9:e1001290. [sPubMed: 22936892].CrossRef
6.
go back to reference Tilghman M, Tsai D, Buene TP, et al. Pooled nucleic acid testing to detect antiretroviral treatment failure in HIV-infected patients in Mozambique. J Acquir Immune Defic Syndr. 2015;70:256–261. [PubMed: 26135327].CrossRef Tilghman M, Tsai D, Buene TP, et al. Pooled nucleic acid testing to detect antiretroviral treatment failure in HIV-infected patients in Mozambique. J Acquir Immune Defic Syndr. 2015;70:256–261. [PubMed: 26135327].CrossRef
7.
go back to reference Joint United Nations Programme on HIV/AIDS. Global AIDS Update. 2016. In:. Accessed 20 Dec 2017. Joint United Nations Programme on HIV/AIDS. Global AIDS Update. 2016. In:. Accessed 20 Dec 2017.
10.
go back to reference Matsuda EM, Coelho LP, Romero G, et al. High prevalence of drug resis- tance mutations among patients failing first-line antiretroviral therapy and predictors of virological response 24 weeks after switch to second-line therapy in São Paulo state, Brazil. AIDS Res Hum Retroviruses. 2017;34(2):1–27. http://doi.org/10.1089/aid.2017.0052.CrossRef Matsuda EM, Coelho LP, Romero G, et al. High prevalence of drug resis- tance mutations among patients failing first-line antiretroviral therapy and predictors of virological response 24 weeks after switch to second-line therapy in São Paulo state, Brazil. AIDS Res Hum Retroviruses. 2017;34(2):1–27. http://​doi.​org/​10.​1089/​aid.​2017.​0052.CrossRef
11.
go back to reference Brites C, Pinto-Neto L, Medeiros M, et al. Extensive variation in drug-resistance mutational profile of Brazilian patients failing antiretroviral therapy in five large Brazilian cities. Braz J Infect Dis. 2016;20(4):323–9.CrossRef Brites C, Pinto-Neto L, Medeiros M, et al. Extensive variation in drug-resistance mutational profile of Brazilian patients failing antiretroviral therapy in five large Brazilian cities. Braz J Infect Dis. 2016;20(4):323–9.CrossRef
13.
go back to reference Boyd MA, Kumarasamy N, Moore CL, et al. for the second-line study group. Ritonavir-boosted lopinavir plus nucleoside or nucleotide reverse transcriptase inhibitors versus ritonavir-boosted lopinavir plus raltegravir for treatment of HIV-1 infection in adults with virological failure of a standard first-line ART regimen (SECOND-LINE): a randomised, open-label, non-inferiority study. Lancet. 2013;381:2091–9.CrossRef Boyd MA, Kumarasamy N, Moore CL, et al. for the second-line study group. Ritonavir-boosted lopinavir plus nucleoside or nucleotide reverse transcriptase inhibitors versus ritonavir-boosted lopinavir plus raltegravir for treatment of HIV-1 infection in adults with virological failure of a standard first-line ART regimen (SECOND-LINE): a randomised, open-label, non-inferiority study. Lancet. 2013;381:2091–9.CrossRef
14.
go back to reference Paton NI, Kityo C, Hoppe A, et al. EARNEST trial team. Assessment of second- line antiretroviral regimens for HIV therapy in Africa. N Engl J Med. 2014;371(3):234–47.CrossRef Paton NI, Kityo C, Hoppe A, et al. EARNEST trial team. Assessment of second- line antiretroviral regimens for HIV therapy in Africa. N Engl J Med. 2014;371(3):234–47.CrossRef
15.
go back to reference La Rosa AM, Harrison LJ, Taiwo B, et al. Raltegravir in second-line antiretroviral therapy in resource-limited settings (SELECT): a randomised, phase 3, non- inferiority study. Lancet HIV. 2016;3:e247–58.CrossRef La Rosa AM, Harrison LJ, Taiwo B, et al. Raltegravir in second-line antiretroviral therapy in resource-limited settings (SELECT): a randomised, phase 3, non- inferiority study. Lancet HIV. 2016;3:e247–58.CrossRef
17.
go back to reference Cavalcanti AM, Lacerda HR, Brito AM, et al. Antiretroviral resistance in individuals presenting therapeutic failure and subtypes of the human immunodeficiency virus type 1 in the northeast region of Brazil. Mem Inst Oswaldo Cruz. 2007;102:785–92.CrossRef Cavalcanti AM, Lacerda HR, Brito AM, et al. Antiretroviral resistance in individuals presenting therapeutic failure and subtypes of the human immunodeficiency virus type 1 in the northeast region of Brazil. Mem Inst Oswaldo Cruz. 2007;102:785–92.CrossRef
18.
go back to reference Lacerda HR, Medeiros LB, Cavalcanti AM, et al. Comparison of the epidemi- ology, profile of mutations, and clinical response to antiretrovirals among subtypes B and F of the human immunodeficiency virus type 1. Mem Inst Oswaldo Cruz. 2007;102:693–9.CrossRef Lacerda HR, Medeiros LB, Cavalcanti AM, et al. Comparison of the epidemi- ology, profile of mutations, and clinical response to antiretrovirals among subtypes B and F of the human immunodeficiency virus type 1. Mem Inst Oswaldo Cruz. 2007;102:693–9.CrossRef
19.
go back to reference Lima K, de Souza Leal É, AMS C, Salustiano DM, de Medeiros LB, da Silva SP, et al. Epidemiological, Clinical and Antiretroviral Susceptibility Characterization of Human Immunodeficiency Virus Subtypes B and Non-B in Pernambuco, Northeast Brazil. PLoS One. 2016;11(5):e0155854.CrossRef Lima K, de Souza Leal É, AMS C, Salustiano DM, de Medeiros LB, da Silva SP, et al. Epidemiological, Clinical and Antiretroviral Susceptibility Characterization of Human Immunodeficiency Virus Subtypes B and Non-B in Pernambuco, Northeast Brazil. PLoS One. 2016;11(5):e0155854.CrossRef
20.
go back to reference Kanters S, Socias ME, Paton NI, et al. Comparative efficacy and safety of second- line antiretroviral therapy for treatment of HIV/AIDS: a systematic review and network meta-analysis. The Lancet HIV. 2017;3018(17):1–9. Kanters S, Socias ME, Paton NI, et al. Comparative efficacy and safety of second- line antiretroviral therapy for treatment of HIV/AIDS: a systematic review and network meta-analysis. The Lancet HIV. 2017;3018(17):1–9.
21.
go back to reference Gräf T, Vrancken B, Maletich Junqueira D, et al. Contribution of epidemiological predictors in unraveling the phylogeographic history of HIV-1 subtype C in Brazil. J Virol. 2015;89:12341–8.CrossRef Gräf T, Vrancken B, Maletich Junqueira D, et al. Contribution of epidemiological predictors in unraveling the phylogeographic history of HIV-1 subtype C in Brazil. J Virol. 2015;89:12341–8.CrossRef
22.
go back to reference Velasco-de-Castro CA, Grinsztejn B, Veloso VG, et al. HIV-1 diversity and drug resistance mutations among people seeking HIV diagnosis in voluntary counseling and testing sites in Rio de Janeiro, Brazil. PLoS One. 2014;9(1):e87622.CrossRef Velasco-de-Castro CA, Grinsztejn B, Veloso VG, et al. HIV-1 diversity and drug resistance mutations among people seeking HIV diagnosis in voluntary counseling and testing sites in Rio de Janeiro, Brazil. PLoS One. 2014;9(1):e87622.CrossRef
23.
go back to reference Miller MD, Margot N, Lu B, Zhong L, et al. Genotypic and phenotypic predictors of the magnitude of response to tenofovir disoproxil fumarate treatment in antiretroviral- experienced patients. J Infect Dis. 2004;189(5):837–46.CrossRef Miller MD, Margot N, Lu B, Zhong L, et al. Genotypic and phenotypic predictors of the magnitude of response to tenofovir disoproxil fumarate treatment in antiretroviral- experienced patients. J Infect Dis. 2004;189(5):837–46.CrossRef
24.
go back to reference Melikian GL, Rhee SY, Taylor J, et al. Standardized comparison of the relative impacts of HIV-1 reverse transcriptase (RT) mutations on nucleoside RT inhibitor susceptibility. Antimicrob Agents Chemother. 2012;56(5):2305–13.CrossRef Melikian GL, Rhee SY, Taylor J, et al. Standardized comparison of the relative impacts of HIV-1 reverse transcriptase (RT) mutations on nucleoside RT inhibitor susceptibility. Antimicrob Agents Chemother. 2012;56(5):2305–13.CrossRef
25.
go back to reference Lopes CA, Soares MA, Falci DR, Sprinz E. The evolving genotypic profile of HIV- 1 mutations related to antiretroviral treatment in the north region of Brazil. Biomed Res Int. 2015;2015:738528e. Lopes CA, Soares MA, Falci DR, Sprinz E. The evolving genotypic profile of HIV- 1 mutations related to antiretroviral treatment in the north region of Brazil. Biomed Res Int. 2015;2015:738528e.
26.
go back to reference Hamers RL, Sigaloff KC, Wensing AM, et al. PharmAccess African studies to evaluate resistance (PASER). Patterns of HIV-1 drug resistance after first-line antiretroviral therapy (ART) failure in 6 sub-Saharan African countries: implications for second-line ART strategies. Clin Infect Dis. 2012;54(11):1660–9.CrossRef Hamers RL, Sigaloff KC, Wensing AM, et al. PharmAccess African studies to evaluate resistance (PASER). Patterns of HIV-1 drug resistance after first-line antiretroviral therapy (ART) failure in 6 sub-Saharan African countries: implications for second-line ART strategies. Clin Infect Dis. 2012;54(11):1660–9.CrossRef
27.
go back to reference Sivamalar S, Dinesha TR, Gomathi S, et al. Accumulation of HIV-1 drug resistance mutations after first-line immunological failure to evaluate the options of recycling NRTI drugs in second-line treatment: a study from South India. AIDS Res Hum Retrovir. 2017;33(3):271–4.CrossRef Sivamalar S, Dinesha TR, Gomathi S, et al. Accumulation of HIV-1 drug resistance mutations after first-line immunological failure to evaluate the options of recycling NRTI drugs in second-line treatment: a study from South India. AIDS Res Hum Retrovir. 2017;33(3):271–4.CrossRef
28.
go back to reference The TenoRes Study Group. Global epidemiology of drug resistance after failure of WHO recommended fi rst-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. Lancet Infect Dis. 2016;16:565–75.CrossRef The TenoRes Study Group. Global epidemiology of drug resistance after failure of WHO recommended fi rst-line regimens for adult HIV-1 infection: a multicentre retrospective cohort study. Lancet Infect Dis. 2016;16:565–75.CrossRef
29.
go back to reference Ford N, Shubber Z, Hill A, et al. Comparative efficacy of lamivudine and Emtricitabine: a systematic review and meta-analysis of randomized trials. PLoS One. 2013;8(11):e79981.CrossRef Ford N, Shubber Z, Hill A, et al. Comparative efficacy of lamivudine and Emtricitabine: a systematic review and meta-analysis of randomized trials. PLoS One. 2013;8(11):e79981.CrossRef
30.
go back to reference Von Wyl V, Yerly S, Böni J, et al. Swiss HIV cohort study. Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clin Infect Dis. 2012;54(1):131–40.CrossRef Von Wyl V, Yerly S, Böni J, et al. Swiss HIV cohort study. Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clin Infect Dis. 2012;54(1):131–40.CrossRef
31.
go back to reference Van Zyl GU, Liu TF, Claassen M, Engelbrecht S, et al. Trends in genotypic HIV-1 antiretroviral resistance between 2006 and 2012 in south African patients receiving first and second-line antiretroviral treatment regimens. PLoS One. 2013;8(6):e67188.CrossRef Van Zyl GU, Liu TF, Claassen M, Engelbrecht S, et al. Trends in genotypic HIV-1 antiretroviral resistance between 2006 and 2012 in south African patients receiving first and second-line antiretroviral treatment regimens. PLoS One. 2013;8(6):e67188.CrossRef
32.
go back to reference Stevens WS, Wallis CL, Sanne I, Venter F. Will etravirine work in patients failing nonnucleoside reverse transcriptase inhibitor-based treatment in southern Africa? J Acquir Immune Defic Syndr. 2009;52(5):655–6.CrossRef Stevens WS, Wallis CL, Sanne I, Venter F. Will etravirine work in patients failing nonnucleoside reverse transcriptase inhibitor-based treatment in southern Africa? J Acquir Immune Defic Syndr. 2009;52(5):655–6.CrossRef
33.
go back to reference Kiertiburanakul S, Wiboonchutikul S, Sukasem C, Chantratita W, Sungkanu- parph S. Using of nevirapine is associated with intermediate and reduced response to etravirine among HIV-infected patients who experienced virologic failure in a resource- limited setting. J Clin Virol. 2010;47(4):330–4.CrossRef Kiertiburanakul S, Wiboonchutikul S, Sukasem C, Chantratita W, Sungkanu- parph S. Using of nevirapine is associated with intermediate and reduced response to etravirine among HIV-infected patients who experienced virologic failure in a resource- limited setting. J Clin Virol. 2010;47(4):330–4.CrossRef
34.
go back to reference Taiwo B, Chaplin B, Penugonda S, et al. Suboptimal Etravirine activity is common during failure of Nevirapine-based combination antiretroviral therapy in a cohort infected with non-B subtype HIV-1. Curr HIV Res. 2010;8(3):194–8.CrossRef Taiwo B, Chaplin B, Penugonda S, et al. Suboptimal Etravirine activity is common during failure of Nevirapine-based combination antiretroviral therapy in a cohort infected with non-B subtype HIV-1. Curr HIV Res. 2010;8(3):194–8.CrossRef
35.
go back to reference Paton, N, Kityo, C, Thompson, J, et al. Impact of NRTI cross-resistance on second-line PI + NRTI therapy outcomes in Africa; Conference on Retrovirus and Opportunistic Infections; Seattle, WA, USA. Feb 23–26, 2015;119 (abstr). Paton, N, Kityo, C, Thompson, J, et al. Impact of NRTI cross-resistance on second-line PI + NRTI therapy outcomes in Africa; Conference on Retrovirus and Opportunistic Infections; Seattle, WA, USA. Feb 23–26, 2015;119 (abstr).
36.
go back to reference Lam EP, Moore CL, Gotuzzo E, et al. Antiretroviral resistance ater first-line anti- retroviral therapy failure in diverse HIV-1 subtypes in the SECOND-LINE study. AIDS Res Hum Retrovir. 2016;32:841–50.CrossRef Lam EP, Moore CL, Gotuzzo E, et al. Antiretroviral resistance ater first-line anti- retroviral therapy failure in diverse HIV-1 subtypes in the SECOND-LINE study. AIDS Res Hum Retrovir. 2016;32:841–50.CrossRef
37.
go back to reference Cozzi-Lepri A, Phillips AN, Martinez-Picado J, et al. EuroSIDA study group. Rate of accumulation of thymidine analogue mutations in patients continuing to receive virologically failing regimens containing zidovudine or stavudine: implications for antiretroviral therapy programs in resource-limited settings. J Infect Dis. 2009;200(5):687–97.CrossRef Cozzi-Lepri A, Phillips AN, Martinez-Picado J, et al. EuroSIDA study group. Rate of accumulation of thymidine analogue mutations in patients continuing to receive virologically failing regimens containing zidovudine or stavudine: implications for antiretroviral therapy programs in resource-limited settings. J Infect Dis. 2009;200(5):687–97.CrossRef
38.
go back to reference Molina JM, Cohen C, Katlama C, Grinsztejn B, Timerman A, Pedro RD. et al.Safety and efficacy of darunavir (TMC114) with low-dose ritonavir in treatment- experienced patients: 24-week results of POWER 3. J Acquir Immune Defic Syndr. 2007;46:24–31.PubMed Molina JM, Cohen C, Katlama C, Grinsztejn B, Timerman A, Pedro RD. et al.Safety and efficacy of darunavir (TMC114) with low-dose ritonavir in treatment- experienced patients: 24-week results of POWER 3. J Acquir Immune Defic Syndr. 2007;46:24–31.PubMed
39.
go back to reference Grinsztejn B, Nguyen B-Y, Katlama C, et al. For the Protocol 005Team. Safety and efficacy of the HIV-1 integrase inhibitor raltegravir (MK-0518) in treatment- experienced patients with multidrug-resistant virus: a phase II randomised controlled trial. Lancet. 2007;369:1261–9. Grinsztejn B, Nguyen B-Y, Katlama C, et al. For the Protocol 005Team. Safety and efficacy of the HIV-1 integrase inhibitor raltegravir (MK-0518) in treatment- experienced patients with multidrug-resistant virus: a phase II randomised controlled trial. Lancet. 2007;369:1261–9.
40.
go back to reference Duani H, Aleixo AW, Tupinambás U. Trends and predictors of HIV-1 acquired drug resistance in Minas Gerais, Brazil: 2002-2012. Braz J Infect Dis. 2017;21(2):148–54.CrossRef Duani H, Aleixo AW, Tupinambás U. Trends and predictors of HIV-1 acquired drug resistance in Minas Gerais, Brazil: 2002-2012. Braz J Infect Dis. 2017;21(2):148–54.CrossRef
41.
go back to reference Nucleoside reverse-transcriptase inhibitor cross-resistance and outcomes from second-line antiretroviral therapy in the public health approach: an observational analysis within the randomised, open-label, EARNEST trial. Nucleoside reverse-transcriptase inhibitor cross-resistance and outcomes from second-line antiretroviral therapy in the public health approach: an observational analysis within the randomised, open-label, EARNEST trial.
43.
go back to reference Shigdel R, Klouman E, Bhandari A, et al. Factors associated with adherence to antiretroviral therapy in HIV-infected patients in Kathmandu District, Nepal. HIV AIDS (Auckl). 2014;6:109–16. Shigdel R, Klouman E, Bhandari A, et al. Factors associated with adherence to antiretroviral therapy in HIV-infected patients in Kathmandu District, Nepal. HIV AIDS (Auckl). 2014;6:109–16.
44.
go back to reference Vandenhende MA, Ingle S, May M, et al. Impact of low-level viremia on clinical and virological outcomes in treated HIV-1-infected patients: the antiretroviral therapy cohort collaboration (ART-CC). AIDS. 2015;29(3):373–83.PubMed Vandenhende MA, Ingle S, May M, et al. Impact of low-level viremia on clinical and virological outcomes in treated HIV-1-infected patients: the antiretroviral therapy cohort collaboration (ART-CC). AIDS. 2015;29(3):373–83.PubMed
Metadata
Title
Virologic suppression in response to antiretroviral therapy despite extensive resistance within HIV-1 reverse transcriptase after the first virologic failure
Authors
Marta Iglis Oliveira
Valter Romão de Souza Junior
Claudia Fernanda de Lacerda Vidal
Paulo Sérgio Ramos de Araújo
Publication date
01-12-2018
Publisher
BioMed Central
Published in
BMC Infectious Diseases / Issue 1/2018
Electronic ISSN: 1471-2334
DOI
https://doi.org/10.1186/s12879-018-3400-6

Other articles of this Issue 1/2018

BMC Infectious Diseases 1/2018 Go to the issue