Skip to main content
Top
Published in: BMC Infectious Diseases 1/2016

Open Access 01-12-2016 | Research article

Clinical impact of methicillin-resistant staphylococcus aureus on bacterial pneumonia: cultivation and 16S ribosomal RNA gene analysis of bronchoalveolar lavage fluid

Authors: Toshinori Kawanami, Kazuhiro Yatera, Kei Yamasaki, Shingo Noguchi, Kazumasa Fukuda, Kentarou Akata, Keisuke Naito, Takashi Kido, Hiroshi Ishimoto, Hatsumi Taniguchi, Hiroshi Mukae

Published in: BMC Infectious Diseases | Issue 1/2016

Login to get access

Abstract

Background

Determining whether methicillin-resistant Staphylococcus aureus (MRSA) is a true causative pathogen or reflective of colonization when MRSA is cultured from the respiratory tract remains important in treating patients with pneumonia.

Methods

We evaluated the bacterial microbiota in bronchoalveolar lavage fluid (BALF) using the clone library method with a 16S ribosomal RNA (rRNA) gene analysis in 42 patients from a pneumonia registry who had MRSA cultured from their sputum or BALF samples. Patients were divided into two groups: those treated with (Group A) or without (Group B) anti-MRSA agents, and their clinical features were compared.

Results

Among 248 patients with pneumonia, 42 patients who had MRSA cultured from the respiratory tract were analyzed (Group A: 13 patients, Group B: 29 patients). No clones of S. aureus were detected in the BALF of 20 out of 42 patients. Twenty-eight of 29 patients in Group B showed favorable clinical outcomes, indicating that these patients had non-MRSA pneumonia. Using a microflora analysis of the BALF, the S. aureus phylotype was predominant in 5 of 28 (17.9 %) patients among the detected bacterial phylotypes, but a minor population (the percentage of clones ≤ 10 %) in 19 (67.9 %) of 28 patients. A statistical analysis revealed no positive relationship between the percentage of clones of the S. aureus phylotype and risk factors of MRSA pneumonia.

Conclusions

The molecular method using BALF specimens suggests that conventional cultivation method results may mislead true causative pathogens, especially in patients with MRSA pneumonia. Further studies are necessary to elucidate these clinically important issues.
Literature
1.
go back to reference Kollef MH, Shorr A, Tabak YP, Gupta V, Liu LZ, Johanners RS. Epidemiology and outcomes of health-care-associated pneumonia. Chest. 2005;128:3854–62.CrossRefPubMed Kollef MH, Shorr A, Tabak YP, Gupta V, Liu LZ, Johanners RS. Epidemiology and outcomes of health-care-associated pneumonia. Chest. 2005;128:3854–62.CrossRefPubMed
2.
go back to reference Rubinstein E, Kollef MH, Nathwani D. Pneumonia caused by methicillin-resistant Staphylococcus aureus. Clin Infect Dis. 2008;46(Sppl 5):S378–85.CrossRefPubMed Rubinstein E, Kollef MH, Nathwani D. Pneumonia caused by methicillin-resistant Staphylococcus aureus. Clin Infect Dis. 2008;46(Sppl 5):S378–85.CrossRefPubMed
4.
go back to reference Guidelines for the management of adults with hospital-acquired, ventilator-associated, and healthcare-associated pneumonia. Am J Respir Crit Care Med. 2005;171:388–416. Guidelines for the management of adults with hospital-acquired, ventilator-associated, and healthcare-associated pneumonia. Am J Respir Crit Care Med. 2005;171:388–416.
5.
go back to reference Masterton RG, Galloway A, French G, Street M, Armstrong J, Brown E, et al. Guidelines for the management of hospital-acquired pneumonia in the UK: report of the working party on hospital-acquired pneumonia of the British Society for Antimicrobial Chemotherapy. J Antimicrob Chemother. 2008;62(1):5–34.CrossRefPubMed Masterton RG, Galloway A, French G, Street M, Armstrong J, Brown E, et al. Guidelines for the management of hospital-acquired pneumonia in the UK: report of the working party on hospital-acquired pneumonia of the British Society for Antimicrobial Chemotherapy. J Antimicrob Chemother. 2008;62(1):5–34.CrossRefPubMed
6.
go back to reference Kohno S, Imamura Y, Shindo Y, Seki M, Ishida T, Teramoto S, et al. Clinical practice guidelines for nursing- and healthcare-associated pneumonia (NHCAP) [complete translation]. Respir Investig. 2013;51:103–26.CrossRefPubMed Kohno S, Imamura Y, Shindo Y, Seki M, Ishida T, Teramoto S, et al. Clinical practice guidelines for nursing- and healthcare-associated pneumonia (NHCAP) [complete translation]. Respir Investig. 2013;51:103–26.CrossRefPubMed
7.
go back to reference Japanese Respiratory Society. Establishment of new severity ratings based on analysis of hospital-acquired pneumonia. Respirology. 2009;14 Suppl 2:S4–9. Japanese Respiratory Society. Establishment of new severity ratings based on analysis of hospital-acquired pneumonia. Respirology. 2009;14 Suppl 2:S4–9.
8.
go back to reference Seki M, Watanabe A, Mikasa K, Kadota J, Kohno S. Revision of the severity rating and classification of hospital-acquired pneumonia in the Japanese Respiratory Society guidelines. Respirology. 2008;13:880–5.CrossRefPubMed Seki M, Watanabe A, Mikasa K, Kadota J, Kohno S. Revision of the severity rating and classification of hospital-acquired pneumonia in the Japanese Respiratory Society guidelines. Respirology. 2008;13:880–5.CrossRefPubMed
9.
go back to reference González C, Rubio M, Romero-Vivas J, González M, Picazo JJ. Bacteremic pneumonia due to Staphylococcus aureus: A comparison of disease caused by methicillin-resistant and methicillin-susceptible organisms. Clin Infect Dis. 1999;29:1171–7.CrossRefPubMed González C, Rubio M, Romero-Vivas J, González M, Picazo JJ. Bacteremic pneumonia due to Staphylococcus aureus: A comparison of disease caused by methicillin-resistant and methicillin-susceptible organisms. Clin Infect Dis. 1999;29:1171–7.CrossRefPubMed
10.
go back to reference Rello J, Sole-Violan J, Sa-Borges M, Garnacho-Montero J, Muñoz E, Sirgo G, et al. Pneumonia caused by oxacillin-resistant Staphylococcus aureus treated with glycopeptides. Crit Care Med. 2005;33:1983–7.CrossRefPubMed Rello J, Sole-Violan J, Sa-Borges M, Garnacho-Montero J, Muñoz E, Sirgo G, et al. Pneumonia caused by oxacillin-resistant Staphylococcus aureus treated with glycopeptides. Crit Care Med. 2005;33:1983–7.CrossRefPubMed
11.
go back to reference Nagaoka K, Yanagihara K, Harada Y, Yamada K, Migiyama Y, Morinaga Y, et al. Predictors of the pathogenicity of methicillin-resistant Staphylococcus aureus nosocomial pneumonia. Respirology. 2014;19:556–62.CrossRefPubMed Nagaoka K, Yanagihara K, Harada Y, Yamada K, Migiyama Y, Morinaga Y, et al. Predictors of the pathogenicity of methicillin-resistant Staphylococcus aureus nosocomial pneumonia. Respirology. 2014;19:556–62.CrossRefPubMed
12.
go back to reference Yamasaki K, Kawanami T, Yatera K, Fukuda K, Noguchi S, Nagata S, et al. Significance of anaerobes and oral bacteria in community-acquired pneumonia. PLoS One. 2013;8:e63103.CrossRefPubMedPubMedCentral Yamasaki K, Kawanami T, Yatera K, Fukuda K, Noguchi S, Nagata S, et al. Significance of anaerobes and oral bacteria in community-acquired pneumonia. PLoS One. 2013;8:e63103.CrossRefPubMedPubMedCentral
13.
go back to reference Noguchi S, Mukae H, Kawanami T, Yamasaki K, Fukuda K, Akata K, et al. Bacteriological Assessment of Healthcare-associated Pneumonia using a Clone Library Analysis. PLoS One. 2015;10:e0124697.CrossRefPubMedPubMedCentral Noguchi S, Mukae H, Kawanami T, Yamasaki K, Fukuda K, Akata K, et al. Bacteriological Assessment of Healthcare-associated Pneumonia using a Clone Library Analysis. PLoS One. 2015;10:e0124697.CrossRefPubMedPubMedCentral
14.
go back to reference Mandell LA, Wunderink RG, Anzueto A, Bartlett JG, Campbell GD, Dean NC, et al. Infectious Diseases Society of America/American Thoracic Society consensus guidelines on the management of community-acquired pneumonia in adults. Clin Infect Dis. 2007;44 Suppl 2:S27–72.CrossRefPubMed Mandell LA, Wunderink RG, Anzueto A, Bartlett JG, Campbell GD, Dean NC, et al. Infectious Diseases Society of America/American Thoracic Society consensus guidelines on the management of community-acquired pneumonia in adults. Clin Infect Dis. 2007;44 Suppl 2:S27–72.CrossRefPubMed
15.
16.
go back to reference Saito A, Miki F, Oizumi K, Rikitomi N, Watanabe A, Koga H, et al. Clinical evaluation methods for new antimicrobial agents to treat respiratory infections: Report of the Committee for the Respiratory System, Japan Society of Chemotherapy. J Infect Chemother. 1999;5:110–23.CrossRefPubMed Saito A, Miki F, Oizumi K, Rikitomi N, Watanabe A, Koga H, et al. Clinical evaluation methods for new antimicrobial agents to treat respiratory infections: Report of the Committee for the Respiratory System, Japan Society of Chemotherapy. J Infect Chemother. 1999;5:110–23.CrossRefPubMed
17.
go back to reference Kawanami T, Fukuda K, Yatera K, Kido M, Mukae H, Taniguchi H. A higher significance of anaerobes: the clone library analysis of bacterial pleurisy. Chest. 2011;139:600–8.CrossRefPubMed Kawanami T, Fukuda K, Yatera K, Kido M, Mukae H, Taniguchi H. A higher significance of anaerobes: the clone library analysis of bacterial pleurisy. Chest. 2011;139:600–8.CrossRefPubMed
18.
go back to reference Morotomi N, Fukuda K, Nakano M, et al. Evaluation of intestinal microbiotas of healthy Japanese adults and effect of antibiotics using the 16S ribosomal RNA gene based clone library method. Biol Pharm Bull. 2011;34(7):1011–20.CrossRefPubMed Morotomi N, Fukuda K, Nakano M, et al. Evaluation of intestinal microbiotas of healthy Japanese adults and effect of antibiotics using the 16S ribosomal RNA gene based clone library method. Biol Pharm Bull. 2011;34(7):1011–20.CrossRefPubMed
19.
go back to reference Aoki R, Fukuda K, Ogawa M, Ikeno T, Kondo H, Tawara A, et al. Identification of causative pathogens in eyes with bacterial conjunctivitis by bacterial cell count and microbiota analysis. Ophthalmology. 2013;120:668–76.CrossRefPubMed Aoki R, Fukuda K, Ogawa M, Ikeno T, Kondo H, Tawara A, et al. Identification of causative pathogens in eyes with bacterial conjunctivitis by bacterial cell count and microbiota analysis. Ophthalmology. 2013;120:668–76.CrossRefPubMed
20.
go back to reference Akiyama T, Miyamoto H, Fukuda K, Sano N, Katagiri N, Shobuike T, et al. Development of a novel PCR method to comprehensively analyze salivary bacterial flora and its application to patients with odontogenic infections. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 2010;109:669–76.CrossRefPubMed Akiyama T, Miyamoto H, Fukuda K, Sano N, Katagiri N, Shobuike T, et al. Development of a novel PCR method to comprehensively analyze salivary bacterial flora and its application to patients with odontogenic infections. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 2010;109:669–76.CrossRefPubMed
21.
go back to reference Vilar J, Domingo ML, Soto C, Cogollos J. Radiology of bacterial pneumonia. Eur J Radiol. 2004;51:102–13.CrossRefPubMed Vilar J, Domingo ML, Soto C, Cogollos J. Radiology of bacterial pneumonia. Eur J Radiol. 2004;51:102–13.CrossRefPubMed
22.
go back to reference Hota B, Lyles R, Rim J, Popovich KJ, Rise T, Aroutcheva A, et al. Predictors of clinical virulence in community-onset methicillin-resistant Staphylococcus aureus infections: the importance of USA300 and pneumonia. Clin lnfect Dis. 2011;53:757–65.CrossRef Hota B, Lyles R, Rim J, Popovich KJ, Rise T, Aroutcheva A, et al. Predictors of clinical virulence in community-onset methicillin-resistant Staphylococcus aureus infections: the importance of USA300 and pneumonia. Clin lnfect Dis. 2011;53:757–65.CrossRef
23.
go back to reference Ewig S, Welte T, Chartre J, Torres A. Rethinking the concepts of community-acquired pneumonia and healthcare-associated pneumonia. Lancet Infect Dis. 2010;10:279–87.CrossRefPubMed Ewig S, Welte T, Chartre J, Torres A. Rethinking the concepts of community-acquired pneumonia and healthcare-associated pneumonia. Lancet Infect Dis. 2010;10:279–87.CrossRefPubMed
24.
go back to reference Shorr AF, Zilberberg MD, Reichley R, Kan J, Hoban A, Hoffman J, et al. Validation of a clinical score for assessing the risk of resistant pathogen in patients with pneumonia presenting to the emergency department. Clin Infect Dis. 2012;54:193–8.CrossRefPubMed Shorr AF, Zilberberg MD, Reichley R, Kan J, Hoban A, Hoffman J, et al. Validation of a clinical score for assessing the risk of resistant pathogen in patients with pneumonia presenting to the emergency department. Clin Infect Dis. 2012;54:193–8.CrossRefPubMed
25.
go back to reference Oshitani Y, Nagai H, Matsui H, Aoshima M. Reevaluation of the Japanese guideline for healthcare-associated pneumonia in a medium-sized community hospital in Japan. J Infect Chemother. 2013;19:579–87.CrossRefPubMed Oshitani Y, Nagai H, Matsui H, Aoshima M. Reevaluation of the Japanese guideline for healthcare-associated pneumonia in a medium-sized community hospital in Japan. J Infect Chemother. 2013;19:579–87.CrossRefPubMed
26.
go back to reference Sakaguchi M, Shime N, Fujita N, Fujiki S, Hashimoto S. Current problems in the diagnosis and treatment of hospital-acquired methicillin-resistant Staphylococcus aureus pneumonia. J Anesth. 2008;22:125–30.CrossRefPubMed Sakaguchi M, Shime N, Fujita N, Fujiki S, Hashimoto S. Current problems in the diagnosis and treatment of hospital-acquired methicillin-resistant Staphylococcus aureus pneumonia. J Anesth. 2008;22:125–30.CrossRefPubMed
Metadata
Title
Clinical impact of methicillin-resistant staphylococcus aureus on bacterial pneumonia: cultivation and 16S ribosomal RNA gene analysis of bronchoalveolar lavage fluid
Authors
Toshinori Kawanami
Kazuhiro Yatera
Kei Yamasaki
Shingo Noguchi
Kazumasa Fukuda
Kentarou Akata
Keisuke Naito
Takashi Kido
Hiroshi Ishimoto
Hatsumi Taniguchi
Hiroshi Mukae
Publication date
01-12-2016
Publisher
BioMed Central
Published in
BMC Infectious Diseases / Issue 1/2016
Electronic ISSN: 1471-2334
DOI
https://doi.org/10.1186/s12879-016-1493-3

Other articles of this Issue 1/2016

BMC Infectious Diseases 1/2016 Go to the issue