Skip to main content
Top
Published in: BMC Medical Research Methodology 1/2018

Open Access 01-12-2018 | Research article

A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases

Authors: Boris Bikbov, Norberto Perico, Giuseppe Remuzzi, on behalf of the GBD Genitourinary Diseases Expert Group

Published in: BMC Medical Research Methodology | Issue 1/2018

Login to get access

Abstract

Background

Conducting a systematic review requires a comprehensive bibliographic search. Comparing different search strategies is essential for choosing those that cover all useful data sources. Our aim was to develop search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases, and evaluate their metrics and performance characteristics that could be useful for other systematic epidemiologic reviews.

Methods

We described the methodological framework and analysed approaches applied in the previously conducted systematic review intended to obtain published data for global estimates of the kidney and urinary disease burden. We used several search strategies in PubMed and EMBASE, and compared several metrics: number needed to retrieve (NNR), number of extracted data rows, number of covered countries, and when appropriate, sensitivity, specificity, precision, and accuracy.

Results

The initial search obtained 29,460 records from PubMed, and 4247 from EMBASE. After the revision, the full text of 381 and 14 articles respectively was obtained for data extraction (the percentage of useful records is 1.3% for PubMed, 0.3% for EMBASE). For PubMed we developed two search strategies and compared them with a ‘gold standard’ formed by merging their results: free word search strategy (FreeWoSS) was based on the search for keywords in all fields, and subject headings based search strategy (SuHeSS) used only MeSH-mapped conditions and countries names. SuHeSS excluded almost 15% of useful articles and data rows extracted from them, but had a lower NNR of 40 and higher specificity. FreeWoSS had better sensitivity and was able to cover the vast majority of articles and extracted data rows, but had a higher NNR of 65.

Conclusions

The sensitive FreeWoSS strategy provides more data for modelling, while the more specific SuHeSS strategy could be used when resources are limited. EMBASE has limited value for our systematic review.
Appendix
Available only for authorised users
Literature
1.
go back to reference Lozano R, Naghavi M, Foreman K, Lim S, Shibuya K, Aboyans V, et al. Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the global burden of disease study 2010. Lancet. 2012;380:2095–128.CrossRef Lozano R, Naghavi M, Foreman K, Lim S, Shibuya K, Aboyans V, et al. Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the global burden of disease study 2010. Lancet. 2012;380:2095–128.CrossRef
2.
go back to reference Vos T, Flaxman AD, Naghavi M, Lozano R, Michaud C, Ezzati M, et al. Years lived with disability (YLDs) for 1160 sequelae of 289 diseases and injuries 1990–2010: a systematic analysis for the global burden of disease study 2010. Lancet. 2012;380:2163–96.CrossRef Vos T, Flaxman AD, Naghavi M, Lozano R, Michaud C, Ezzati M, et al. Years lived with disability (YLDs) for 1160 sequelae of 289 diseases and injuries 1990–2010: a systematic analysis for the global burden of disease study 2010. Lancet. 2012;380:2163–96.CrossRef
3.
go back to reference CJL M, Vos T, Lozano R, Naghavi M, Flaxman AD, Michaud C, et al. Disability-adjusted life years (DALYs) for 291 diseases and injuries in 21 regions, 1990–2010: a systematic analysis for the Global Burden of Disease Study 2010. Lancet. 2012;380:2197–223.CrossRef CJL M, Vos T, Lozano R, Naghavi M, Flaxman AD, Michaud C, et al. Disability-adjusted life years (DALYs) for 291 diseases and injuries in 21 regions, 1990–2010: a systematic analysis for the Global Burden of Disease Study 2010. Lancet. 2012;380:2197–223.CrossRef
4.
go back to reference Ene-Iordache B, Perico N, Bikbov B, Carminati S, Remuzzi A, Perna A, et al. Chronic kidney disease and cardiovascular risk in six regions of the world (ISN-KDDC): a cross-sectional study. Lancet Glob Heal. 2016;4:e307–19.CrossRef Ene-Iordache B, Perico N, Bikbov B, Carminati S, Remuzzi A, Perna A, et al. Chronic kidney disease and cardiovascular risk in six regions of the world (ISN-KDDC): a cross-sectional study. Lancet Glob Heal. 2016;4:e307–19.CrossRef
5.
go back to reference Stevens GA, Alkema L, Black RE, Boerma JT. Guidelines for accurate and transparent health estimates reporting: the GATHER statement. PLoS Med. 2016;13:e1002056.CrossRefPubMedCentral Stevens GA, Alkema L, Black RE, Boerma JT. Guidelines for accurate and transparent health estimates reporting: the GATHER statement. PLoS Med. 2016;13:e1002056.CrossRefPubMedCentral
6.
go back to reference Wilczynski NL, Morgan D, Haynes RB. An overview of the design and methods for retrieving high-quality studies for clinical care. BMC Med Inform Decis Mak. 2005;8:1–8. Wilczynski NL, Morgan D, Haynes RB. An overview of the design and methods for retrieving high-quality studies for clinical care. BMC Med Inform Decis Mak. 2005;8:1–8.
7.
go back to reference Newcombe RG. Two-sided confidence intervals for the single proportion: comparison of seven methods. Stat Med. 1998;17:857–72.CrossRef Newcombe RG. Two-sided confidence intervals for the single proportion: comparison of seven methods. Stat Med. 1998;17:857–72.CrossRef
8.
go back to reference Von Elm E, Altman DG, Egger M, Pocock SJ, Gøtzsche PC, Andenbroucke JP, Initiative STROBE. The strengthening the reporting of observational studies in epidemiology (STROBE) statement: guidelines for reporting observational studies. PLoS Med. 2007;4:e296.CrossRefPubMedCentral Von Elm E, Altman DG, Egger M, Pocock SJ, Gøtzsche PC, Andenbroucke JP, Initiative STROBE. The strengthening the reporting of observational studies in epidemiology (STROBE) statement: guidelines for reporting observational studies. PLoS Med. 2007;4:e296.CrossRefPubMedCentral
9.
go back to reference McGowan J, Sampson M, Salzwedel DM, Cogo E, Foerster V, Lefebvre C. PRESS peer review of electronic search strategies: 2015 guideline statement. J Clin Epidemiol. 2016;75:40–6.CrossRef McGowan J, Sampson M, Salzwedel DM, Cogo E, Foerster V, Lefebvre C. PRESS peer review of electronic search strategies: 2015 guideline statement. J Clin Epidemiol. 2016;75:40–6.CrossRef
10.
go back to reference Moher D, Liberati A, Tetzlaff J, Altman DG, PRISMA Group. Preferred Reporting Items for Systematic Reviews and Meta-Analyses: The PRISMA Statement. PLoS Med. 2009;6:e1000097.CrossRefPubMedCentral Moher D, Liberati A, Tetzlaff J, Altman DG, PRISMA Group. Preferred Reporting Items for Systematic Reviews and Meta-Analyses: The PRISMA Statement. PLoS Med. 2009;6:e1000097.CrossRefPubMedCentral
11.
go back to reference Brück K, Jager KJ, Dounousi E, Kainz A, Nitsch D, Ärnlöv J, et al. Methodology used in studies reporting chronic kidney disease prevalence: a systematic literature review. Nephrol Dial Transplant. 2015;30(Suppl 4):iv6–16.CrossRefPubMedCentral Brück K, Jager KJ, Dounousi E, Kainz A, Nitsch D, Ärnlöv J, et al. Methodology used in studies reporting chronic kidney disease prevalence: a systematic literature review. Nephrol Dial Transplant. 2015;30(Suppl 4):iv6–16.CrossRefPubMedCentral
12.
go back to reference McCullough K, Sharma P, Ali T, Khan I, Smith WCS, Macleod A, et al. Measuring the population burden of chronic kidney disease: a systematic literature review of the estimated prevalence of impaired kidney function. Nephrol Dial Transplant. 2012;27:1812–21.CrossRef McCullough K, Sharma P, Ali T, Khan I, Smith WCS, Macleod A, et al. Measuring the population burden of chronic kidney disease: a systematic literature review of the estimated prevalence of impaired kidney function. Nephrol Dial Transplant. 2012;27:1812–21.CrossRef
13.
go back to reference Susantitaphong P, Cruz DN, Cerda J, Abulfaraj M, Alqahtani F, Koulouridis I, et al. World incidence of AKI: a meta-analysis. Clin J Am Soc Nephrol. 2013;8:1482–93.CrossRefPubMedCentral Susantitaphong P, Cruz DN, Cerda J, Abulfaraj M, Alqahtani F, Koulouridis I, et al. World incidence of AKI: a meta-analysis. Clin J Am Soc Nephrol. 2013;8:1482–93.CrossRefPubMedCentral
14.
go back to reference Coca SG, Yusuf B, Shlipak MG, Garg AX, Parikh CR. Long-term risk of mortality and other adverse outcomes after acute kidney injury: a systematic review and meta-analysis. Am J Kidney Dis. 2009;53:961–73.CrossRefPubMedCentral Coca SG, Yusuf B, Shlipak MG, Garg AX, Parikh CR. Long-term risk of mortality and other adverse outcomes after acute kidney injury: a systematic review and meta-analysis. Am J Kidney Dis. 2009;53:961–73.CrossRefPubMedCentral
15.
go back to reference Kassebaum NJ, Bernabé E, Dahiya M, Bhandari B, Murray CJL, Marcenes W. Global burden of untreated caries: a systematic review and metaregression. J Dent Res. 2015;94:650–8.CrossRef Kassebaum NJ, Bernabé E, Dahiya M, Bhandari B, Murray CJL, Marcenes W. Global burden of untreated caries: a systematic review and metaregression. J Dent Res. 2015;94:650–8.CrossRef
16.
go back to reference Monasta L, Ronfani L, Marchetti F, Montico M, Vecchi Brumatti L, Bavcar A, et al. Burden of disease caused by otitis media: systematic review and global estimates. PLoS One. 2012;7:e36226.CrossRefPubMedCentral Monasta L, Ronfani L, Marchetti F, Montico M, Vecchi Brumatti L, Bavcar A, et al. Burden of disease caused by otitis media: systematic review and global estimates. PLoS One. 2012;7:e36226.CrossRefPubMedCentral
17.
go back to reference Bourne R, Leasher J, Glanville J. New systematic review methodology for visual impairment and blindness for the 2010 global burden of disease study. Ophtalmic Epidemiol. 2014;20:33–9.CrossRef Bourne R, Leasher J, Glanville J. New systematic review methodology for visual impairment and blindness for the 2010 global burden of disease study. Ophtalmic Epidemiol. 2014;20:33–9.CrossRef
18.
go back to reference The Global Burden of Disease Stroke Expert Group. Methodology of the global and regional burden of stroke study. Neuroepidemiology. 2012;38:30–40.CrossRef The Global Burden of Disease Stroke Expert Group. Methodology of the global and regional burden of stroke study. Neuroepidemiology. 2012;38:30–40.CrossRef
19.
go back to reference Fowkes FGR, Rudan D, Rudan I, Aboyans V, Denenberg JO, McDermott MM, et al. Comparison of global estimates of prevalence and risk factors for peripheral artery disease in 2000 and 2010: a systematic review and analysis. Lancet. 2013;6736:1–12. Fowkes FGR, Rudan D, Rudan I, Aboyans V, Denenberg JO, McDermott MM, et al. Comparison of global estimates of prevalence and risk factors for peripheral artery disease in 2000 and 2010: a systematic review and analysis. Lancet. 2013;6736:1–12.
20.
go back to reference Danaei G, Finucane MM, Lu Y, Singh GM, Cowan MJ, Paciorek CJ, et al. National, regional, and global trends in fasting plasma glucose and diabetes prevalence since 1980: systematic analysis of health examination surveys and epidemiological studies with 370 country-years and 2.7 million participants. Lancet. 2011;378:31–40.CrossRef Danaei G, Finucane MM, Lu Y, Singh GM, Cowan MJ, Paciorek CJ, et al. National, regional, and global trends in fasting plasma glucose and diabetes prevalence since 1980: systematic analysis of health examination surveys and epidemiological studies with 370 country-years and 2.7 million participants. Lancet. 2011;378:31–40.CrossRef
21.
go back to reference Danaei G, Finucane MM, Lin JK, Singh GM, Paciorek CJ, Cowan MJ, et al. National, regional, and global trends in systolic blood pressure since 1980: systematic analysis of health examination surveys and epidemiological studies with 786 country-years and 5.4 million participants. Lancet. 2011;377:568–77.CrossRef Danaei G, Finucane MM, Lin JK, Singh GM, Paciorek CJ, Cowan MJ, et al. National, regional, and global trends in systolic blood pressure since 1980: systematic analysis of health examination surveys and epidemiological studies with 786 country-years and 5.4 million participants. Lancet. 2011;377:568–77.CrossRef
22.
go back to reference Farzadfar F, Finucane MM, Danaei G, Pelizzari PM, Cowan MJ, Paciorek CJ, et al. National, regional, and global trends in serum total cholesterol since 1980: systematic analysis of health examination surveys and epidemiological studies with 321 country-years and 3.0 million participants. Lancet. 2011;377:578–86.CrossRefPubMedCentral Farzadfar F, Finucane MM, Danaei G, Pelizzari PM, Cowan MJ, Paciorek CJ, et al. National, regional, and global trends in serum total cholesterol since 1980: systematic analysis of health examination surveys and epidemiological studies with 321 country-years and 3.0 million participants. Lancet. 2011;377:578–86.CrossRefPubMedCentral
24.
go back to reference Sladek RM, Tieman J. Applying evidence in the real world: a case study in library and information practice. Heal Info Libr J. 2008;25:295–301.CrossRef Sladek RM, Tieman J. Applying evidence in the real world: a case study in library and information practice. Heal Info Libr J. 2008;25:295–301.CrossRef
25.
go back to reference Duffy S, De KS, Misso K, Noake C, Ross J, Stirk L. Supplementary searches of PubMed to improve currency of MEDLINE and MEDLINE in-process searches via Ovid. J Med Libr Assoc. 2016;104:309–12.CrossRefPubMedCentral Duffy S, De KS, Misso K, Noake C, Ross J, Stirk L. Supplementary searches of PubMed to improve currency of MEDLINE and MEDLINE in-process searches via Ovid. J Med Libr Assoc. 2016;104:309–12.CrossRefPubMedCentral
26.
go back to reference Younger P, Library EH, Devon R. When is a search not a search? A comparison of searching the AMED complementary health database via EBSCOhost, OVID and DIALOG. Heal Info Libr J. 2008;26:126–35.CrossRef Younger P, Library EH, Devon R. When is a search not a search? A comparison of searching the AMED complementary health database via EBSCOhost, OVID and DIALOG. Heal Info Libr J. 2008;26:126–35.CrossRef
27.
go back to reference Iansavichus AV, Hildebrand AM, Haynes RB, Wilczynski NL, Levin A, Hemmelgarn BR, et al. High-performance information search filters for CKD content in PubMed, Ovid MEDLINE, and EMBASE. Am J Kidney Dis. 2017;65:26–32.CrossRef Iansavichus AV, Hildebrand AM, Haynes RB, Wilczynski NL, Levin A, Hemmelgarn BR, et al. High-performance information search filters for CKD content in PubMed, Ovid MEDLINE, and EMBASE. Am J Kidney Dis. 2017;65:26–32.CrossRef
28.
go back to reference Hildebrand AM, Iansavichus AV, Haynes RB, Wilczynski NL, Mehta RL, Parikh CR, et al. High-performance information search filters for acute kidney injury content in PubMed, Ovid Medline and Embase. Nephrol Dial Transplant. 2014;29:823–32.CrossRef Hildebrand AM, Iansavichus AV, Haynes RB, Wilczynski NL, Mehta RL, Parikh CR, et al. High-performance information search filters for acute kidney injury content in PubMed, Ovid Medline and Embase. Nephrol Dial Transplant. 2014;29:823–32.CrossRef
29.
go back to reference Wilczynski NL, McKibbon KA, Haynes RB. Search filter precision can be improved by NOTing out irrelevant content. AMIA Annu Symp Proc. 2011;2011:1506–13.PubMedPubMedCentral Wilczynski NL, McKibbon KA, Haynes RB. Search filter precision can be improved by NOTing out irrelevant content. AMIA Annu Symp Proc. 2011;2011:1506–13.PubMedPubMedCentral
Metadata
Title
A comparison of metrics and performance characteristics of different search strategies for article retrieval for a systematic review of the global epidemiology of kidney and urinary diseases
Authors
Boris Bikbov
Norberto Perico
Giuseppe Remuzzi
on behalf of the GBD Genitourinary Diseases Expert Group
Publication date
01-12-2018
Publisher
BioMed Central
Published in
BMC Medical Research Methodology / Issue 1/2018
Electronic ISSN: 1471-2288
DOI
https://doi.org/10.1186/s12874-018-0569-8

Other articles of this Issue 1/2018

BMC Medical Research Methodology 1/2018 Go to the issue