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Published in: Orphanet Journal of Rare Diseases 1/2011

Open Access 01-12-2011 | Research

Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe

Authors: Emmanuelle Génin, Martin Schumacher, Jean-Claude Roujeau, Luigi Naldi, Yvonne Liss, Rémi Kazma, Peggy Sekula, Alain Hovnanian, Maja Mockenhaupt

Published in: Orphanet Journal of Rare Diseases | Issue 1/2011

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Abstract

Background

Stevens-Johnson syndrome (SJS) and Toxic Epidermal Necrolysis (TEN) are rare but extremely severe cutaneous adverse drug reactions in which drug-specific associations with HLA-B alleles were described.

Objectives

To investigate genetic association at a genome-wide level on a large sample of SJS/TEN patients.

Methods

We performed a genome wide association study on a sample of 424 European cases and 1,881 controls selected from a Reference Control Panel.

Results

Six SNPs located in the HLA region showed significant evidence for association (OR range: 1.53-1.74). The haplotype formed by their risk allele was more associated with the disease than any of the single SNPs and was even much stronger in patients exposed to allopurinol (ORallopurinol = 7.77, 95%CI = [4.66; 12.98]). The associated haplotype is in linkage disequilibrium with the HLA-B*5801 allele known to be associated with allopurinol induced SJS/TEN in Asian populations.

Conclusion

The involvement of genetic variants located in the HLA region in SJS/TEN is confirmed in European samples, but no other locus reaches genome-wide statistical significance in this sample that is also the largest one collected so far. If some loci outside HLA play a role in SJS/TEN, their effect is thus likely to be very small.
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Literature
1.
go back to reference Lazarou J, Pomeranz BH, Corey PN: Incidence of adverse drug reactions in hospitalized patients: a meta-analysis of prospective studies. Jama. 1998, 279 (15): 1200-1205. 10.1001/jama.279.15.1200.CrossRefPubMed Lazarou J, Pomeranz BH, Corey PN: Incidence of adverse drug reactions in hospitalized patients: a meta-analysis of prospective studies. Jama. 1998, 279 (15): 1200-1205. 10.1001/jama.279.15.1200.CrossRefPubMed
2.
go back to reference Svensson CK, Cowen EW, Gaspari AA: Cutaneous drug reactions. Pharmacol Rev. 2001, 53 (3): 357-379.PubMed Svensson CK, Cowen EW, Gaspari AA: Cutaneous drug reactions. Pharmacol Rev. 2001, 53 (3): 357-379.PubMed
3.
go back to reference Wolverton SE: Update on cutaneous drug reactions. Adv Dermatol. 1997, 13: 65-84.PubMed Wolverton SE: Update on cutaneous drug reactions. Adv Dermatol. 1997, 13: 65-84.PubMed
4.
go back to reference Roujeau JC, Stern RS: Severe adverse cutaneous reactions to drugs. N Engl J Med. 1994, 331 (19): 1272-1285. 10.1056/NEJM199411103311906.CrossRefPubMed Roujeau JC, Stern RS: Severe adverse cutaneous reactions to drugs. N Engl J Med. 1994, 331 (19): 1272-1285. 10.1056/NEJM199411103311906.CrossRefPubMed
5.
go back to reference Auquier-Dunant A, Mockenhaupt M, Naldi L, Correia O, Schroder W, Roujeau JC: Correlations between clinical patterns and causes of erythema multiforme majus, Stevens-Johnson syndrome, and toxic epidermal necrolysis: results of an international prospective study. Arch Dermatol. 2002, 138 (8): 1019-1024. 10.1001/archderm.138.8.1019.CrossRefPubMed Auquier-Dunant A, Mockenhaupt M, Naldi L, Correia O, Schroder W, Roujeau JC: Correlations between clinical patterns and causes of erythema multiforme majus, Stevens-Johnson syndrome, and toxic epidermal necrolysis: results of an international prospective study. Arch Dermatol. 2002, 138 (8): 1019-1024. 10.1001/archderm.138.8.1019.CrossRefPubMed
6.
go back to reference Rzany B, Mockenhaupt M, Baur S, Schroder W, Stocker U, Mueller J, Hollander N, Bruppacher R, Schopf E: Epidemiology of erythema exsudativum multiforme majus, Stevens-Johnson syndrome, and toxic epidermal necrolysis in Germany (1990-1992): structure and results of a population-based registry. J Clin Epidemiol. 1996, 49 (7): 769-773. 10.1016/0895-4356(96)00035-2.CrossRefPubMed Rzany B, Mockenhaupt M, Baur S, Schroder W, Stocker U, Mueller J, Hollander N, Bruppacher R, Schopf E: Epidemiology of erythema exsudativum multiforme majus, Stevens-Johnson syndrome, and toxic epidermal necrolysis in Germany (1990-1992): structure and results of a population-based registry. J Clin Epidemiol. 1996, 49 (7): 769-773. 10.1016/0895-4356(96)00035-2.CrossRefPubMed
7.
go back to reference Halevy S, Ghislain PD, Mockenhaupt M, Fagot JP, Bouwes Bavinck JN, Sidoroff A, Naldi L, Dunant A, Viboud C, Roujeau JC: Allopurinol is the most common cause of Stevens-Johnson syndrome and toxic epidermal necrolysis in Europe and Israel. J Am Acad Dermatol. 2008, 58 (1): 25-32. 10.1016/j.jaad.2007.08.036.CrossRefPubMed Halevy S, Ghislain PD, Mockenhaupt M, Fagot JP, Bouwes Bavinck JN, Sidoroff A, Naldi L, Dunant A, Viboud C, Roujeau JC: Allopurinol is the most common cause of Stevens-Johnson syndrome and toxic epidermal necrolysis in Europe and Israel. J Am Acad Dermatol. 2008, 58 (1): 25-32. 10.1016/j.jaad.2007.08.036.CrossRefPubMed
8.
go back to reference Mockenhaupt M, Viboud C, Dunant A, Naldi L, Halevy S, Bouwes Bavinck JN, Sidoroff A, Schneck J, Roujeau JC, Flahault A: Stevens-Johnson syndrome and toxic epidermal necrolysis: assessment of medication risks with emphasis on recently marketed drugs. The EuroSCAR-study. J Invest Dermatol. 2008, 128 (1): 35-44. 10.1038/sj.jid.5701033.CrossRefPubMed Mockenhaupt M, Viboud C, Dunant A, Naldi L, Halevy S, Bouwes Bavinck JN, Sidoroff A, Schneck J, Roujeau JC, Flahault A: Stevens-Johnson syndrome and toxic epidermal necrolysis: assessment of medication risks with emphasis on recently marketed drugs. The EuroSCAR-study. J Invest Dermatol. 2008, 128 (1): 35-44. 10.1038/sj.jid.5701033.CrossRefPubMed
9.
go back to reference Pirmohamed M, Park BK: Genetic susceptibility to adverse drug reactions. Trends Pharmacol Sci. 2001, 22 (6): 298-305. 10.1016/S0165-6147(00)01717-X.CrossRefPubMed Pirmohamed M, Park BK: Genetic susceptibility to adverse drug reactions. Trends Pharmacol Sci. 2001, 22 (6): 298-305. 10.1016/S0165-6147(00)01717-X.CrossRefPubMed
10.
go back to reference Melsom RD: Familial hypersensitivity to allopurinol with subsequent desensitization. Rheumatology (Oxford). 1999, 38 (12): 1301. 10.1093/rheumatology/38.12.1301.CrossRef Melsom RD: Familial hypersensitivity to allopurinol with subsequent desensitization. Rheumatology (Oxford). 1999, 38 (12): 1301. 10.1093/rheumatology/38.12.1301.CrossRef
11.
go back to reference Pellicano R, Silvestris A, Iannantuono M, Ciavarella G, Lomuto M: Familial occurrence of fixed drug eruptions. Acta Derm Venereol. 1992, 72 (4): 292-293.PubMed Pellicano R, Silvestris A, Iannantuono M, Ciavarella G, Lomuto M: Familial occurrence of fixed drug eruptions. Acta Derm Venereol. 1992, 72 (4): 292-293.PubMed
12.
go back to reference Roujeau JC, Huynh TN, Bracq C, Guillaume JC, Revuz J, Touraine R: Genetic susceptibility to toxic epidermal necrolysis. Arch Dermatol. 1987, 123 (9): 1171-1173. 10.1001/archderm.123.9.1171.CrossRefPubMed Roujeau JC, Huynh TN, Bracq C, Guillaume JC, Revuz J, Touraine R: Genetic susceptibility to toxic epidermal necrolysis. Arch Dermatol. 1987, 123 (9): 1171-1173. 10.1001/archderm.123.9.1171.CrossRefPubMed
13.
go back to reference Roujeau JC, Bracq C, Huyn NT, Chaussalet E, Raffin C, Duedari N: HLA phenotypes and bullous cutaneous reactions to drugs. Tissue Antigens. 1986, 28 (4): 251-254.CrossRefPubMed Roujeau JC, Bracq C, Huyn NT, Chaussalet E, Raffin C, Duedari N: HLA phenotypes and bullous cutaneous reactions to drugs. Tissue Antigens. 1986, 28 (4): 251-254.CrossRefPubMed
14.
go back to reference Chung WH, Hung SI, Hong HS, Hsih MS, Yang LC, Ho HC, Wu JY, Chen YT: Medical genetics: a marker for Stevens-Johnson syndrome. Nature. 2004, 428 (6982): 486. 10.1038/428486a.CrossRefPubMed Chung WH, Hung SI, Hong HS, Hsih MS, Yang LC, Ho HC, Wu JY, Chen YT: Medical genetics: a marker for Stevens-Johnson syndrome. Nature. 2004, 428 (6982): 486. 10.1038/428486a.CrossRefPubMed
15.
go back to reference Hung SI, Chung WH, Liou LB, Chu CC, Lin M, Huang HP, Lin YL, Lan JL, Yang LC, Hong HS, Chen MJ, Lai PC, Wu MS, Chu CY, Wang KH, Chen CH, Fann CS, Wu JY, Chen YT: HLA-B*5801 allele as a genetic marker for severe cutaneous adverse reactions caused by allopurinol. Proc Natl Acad Sci USA. 2005, 102 (11): 4134-4139. 10.1073/pnas.0409500102.PubMedCentralCrossRefPubMed Hung SI, Chung WH, Liou LB, Chu CC, Lin M, Huang HP, Lin YL, Lan JL, Yang LC, Hong HS, Chen MJ, Lai PC, Wu MS, Chu CY, Wang KH, Chen CH, Fann CS, Wu JY, Chen YT: HLA-B*5801 allele as a genetic marker for severe cutaneous adverse reactions caused by allopurinol. Proc Natl Acad Sci USA. 2005, 102 (11): 4134-4139. 10.1073/pnas.0409500102.PubMedCentralCrossRefPubMed
16.
go back to reference Lonjou C, Borot N, Sekula P, Ledger N, Thomas L, Halevy S, Naldi L, Bouwes-Bavinck JN, Sidoroff A, de Toma C, Schumacher M, Roujeau JC, Hovnanian A, Mockenhaupt M, RegiSCAR study group: A European study of HLA-B in Stevens-Johnson syndrome and toxic epidermal necrolysis related to five high-risk drugs. Pharmacogenetics and genomics. 2008, 18 (2): 99-107. 10.1097/FPC.0b013e3282f3ef9c.CrossRefPubMed Lonjou C, Borot N, Sekula P, Ledger N, Thomas L, Halevy S, Naldi L, Bouwes-Bavinck JN, Sidoroff A, de Toma C, Schumacher M, Roujeau JC, Hovnanian A, Mockenhaupt M, RegiSCAR study group: A European study of HLA-B in Stevens-Johnson syndrome and toxic epidermal necrolysis related to five high-risk drugs. Pharmacogenetics and genomics. 2008, 18 (2): 99-107. 10.1097/FPC.0b013e3282f3ef9c.CrossRefPubMed
17.
go back to reference Lonjou C, Thomas L, Borot N, Ledger N, de Toma C, LeLouet H, Graf E, Schumacher M, Hovnanian A, Mockenhaupt M, Roujeau JC, RegiSCAR Group: A marker for Stevens-Johnson syndrome ...: ethnicity matters. Pharmacogenomics J. 2006, 6 (4): 265-268.PubMed Lonjou C, Thomas L, Borot N, Ledger N, de Toma C, LeLouet H, Graf E, Schumacher M, Hovnanian A, Mockenhaupt M, Roujeau JC, RegiSCAR Group: A marker for Stevens-Johnson syndrome ...: ethnicity matters. Pharmacogenomics J. 2006, 6 (4): 265-268.PubMed
18.
go back to reference Pirmohamed M, Arbuckle JB, Bowman CE, Brunner M, Burns DK, Delrieu O, Dix LP, Twomey JA, Stern RS: Investigation into the multidimensional genetic basis of drug-induced Stevens-Johnson syndrome and toxic epidermal necrolysis. Pharmacogenomics. 2007, 8 (12): 1661-1691. 10.2217/14622416.8.12.1661.CrossRefPubMed Pirmohamed M, Arbuckle JB, Bowman CE, Brunner M, Burns DK, Delrieu O, Dix LP, Twomey JA, Stern RS: Investigation into the multidimensional genetic basis of drug-induced Stevens-Johnson syndrome and toxic epidermal necrolysis. Pharmacogenomics. 2007, 8 (12): 1661-1691. 10.2217/14622416.8.12.1661.CrossRefPubMed
20.
go back to reference Abe R: Toxic epidermal necrolysis and Stevens-Johnson syndrome: soluble Fas ligand involvement in the pathomechanisms of these diseases. J Dermatol Sci. 2008, 52 (3): 151-159. 10.1016/j.jdermsci.2008.06.003.CrossRefPubMed Abe R: Toxic epidermal necrolysis and Stevens-Johnson syndrome: soluble Fas ligand involvement in the pathomechanisms of these diseases. J Dermatol Sci. 2008, 52 (3): 151-159. 10.1016/j.jdermsci.2008.06.003.CrossRefPubMed
21.
22.
go back to reference Heath SC, Gut IG, Brennan P, McKay JD, Bencko V, Fabianova E, Foretova L, Georges M, Janout V, Kabesch M: Investigation of the fine structure of European populations with applications to disease association studies. Eur J Hum Genet. 2008, 16 (12): 1413-1429. 10.1038/ejhg.2008.210.CrossRefPubMed Heath SC, Gut IG, Brennan P, McKay JD, Bencko V, Fabianova E, Foretova L, Georges M, Janout V, Kabesch M: Investigation of the fine structure of European populations with applications to disease association studies. Eur J Hum Genet. 2008, 16 (12): 1413-1429. 10.1038/ejhg.2008.210.CrossRefPubMed
23.
go back to reference Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC: PLINK: a tool set for whole-genome association and population-based linkage analyses. American journal of human genetics. 2007, 81 (3): 559-575. 10.1086/519795.PubMedCentralCrossRefPubMed Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC: PLINK: a tool set for whole-genome association and population-based linkage analyses. American journal of human genetics. 2007, 81 (3): 559-575. 10.1086/519795.PubMedCentralCrossRefPubMed
24.
go back to reference Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D: Principal components analysis corrects for stratification in genome-wide association studies. Nature genetics. 2006, 38 (8): 904-909. 10.1038/ng1847.CrossRefPubMed Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D: Principal components analysis corrects for stratification in genome-wide association studies. Nature genetics. 2006, 38 (8): 904-909. 10.1038/ng1847.CrossRefPubMed
26.
go back to reference Devlin B, Roeder K: Genomic control for association studies. Biometrics. 1999, 55 (4): 997-1004. 10.1111/j.0006-341X.1999.00997.x.CrossRefPubMed Devlin B, Roeder K: Genomic control for association studies. Biometrics. 1999, 55 (4): 997-1004. 10.1111/j.0006-341X.1999.00997.x.CrossRefPubMed
27.
go back to reference StataCorp: Stata Statistical Software: Release 10. College Station, TX. StataCorp LP; 2007. StataCorp: Stata Statistical Software: Release 10. College Station, TX. StataCorp LP; 2007.
28.
go back to reference Kazma R, Babron MC, Genin E: Genetic association and gene-environment interaction: a new method for overcoming the lack of exposure information in controls. Am J Epidemiol. 173 (2): 225-235. Kazma R, Babron MC, Genin E: Genetic association and gene-environment interaction: a new method for overcoming the lack of exposure information in controls. Am J Epidemiol. 173 (2): 225-235.
29.
go back to reference Manolio TA, Brooks LD, Collins FS: A HapMap harvest of insights into the genetics of common disease. J Clin Invest. 2008, 118 (5): 1590-1605. 10.1172/JCI34772.PubMedCentralCrossRefPubMed Manolio TA, Brooks LD, Collins FS: A HapMap harvest of insights into the genetics of common disease. J Clin Invest. 2008, 118 (5): 1590-1605. 10.1172/JCI34772.PubMedCentralCrossRefPubMed
30.
go back to reference Reich DE, Lander ES: On the allelic spectrum of human disease. Trends Genet. 2001, 17 (9): 502-510. 10.1016/S0168-9525(01)02410-6.CrossRefPubMed Reich DE, Lander ES: On the allelic spectrum of human disease. Trends Genet. 2001, 17 (9): 502-510. 10.1016/S0168-9525(01)02410-6.CrossRefPubMed
31.
go back to reference Lohmueller KE, Pearce CL, Pike M, Lander ES, Hirschhorn JN: Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease. Nature genetics. 2003, 33 (2): 177-182. 10.1038/ng1071.CrossRefPubMed Lohmueller KE, Pearce CL, Pike M, Lander ES, Hirschhorn JN: Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease. Nature genetics. 2003, 33 (2): 177-182. 10.1038/ng1071.CrossRefPubMed
32.
go back to reference Bodmer W, Bonilla C: Common and rare variants in multifactorial susceptibility to common diseases. Nature genetics. 2008, 40 (6): 695-701. 10.1038/ng.f.136.PubMedCentralCrossRefPubMed Bodmer W, Bonilla C: Common and rare variants in multifactorial susceptibility to common diseases. Nature genetics. 2008, 40 (6): 695-701. 10.1038/ng.f.136.PubMedCentralCrossRefPubMed
33.
go back to reference Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, Rotimi CN, Slatkin M, Valle D, Whittemore AS, Boehnke M, Clark AG, Eichler EE, Gibson G, Haines JL, Mackay TF, McCarroll SA, Visscher PM: Finding the missing heritability of complex diseases. Nature. 2009, 461 (7265): 747-753. 10.1038/nature08494.PubMedCentralCrossRefPubMed Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, Rotimi CN, Slatkin M, Valle D, Whittemore AS, Boehnke M, Clark AG, Eichler EE, Gibson G, Haines JL, Mackay TF, McCarroll SA, Visscher PM: Finding the missing heritability of complex diseases. Nature. 2009, 461 (7265): 747-753. 10.1038/nature08494.PubMedCentralCrossRefPubMed
34.
go back to reference Gorlov IP, Gorlova OY, Sunyaev SR, Spitz MR, Amos CI: Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms. American journal of human genetics. 2008, 82 (1): 100-112. 10.1016/j.ajhg.2007.09.006.PubMedCentralCrossRefPubMed Gorlov IP, Gorlova OY, Sunyaev SR, Spitz MR, Amos CI: Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms. American journal of human genetics. 2008, 82 (1): 100-112. 10.1016/j.ajhg.2007.09.006.PubMedCentralCrossRefPubMed
35.
go back to reference McCarthy MI: Exploring the unknown: assumptions about allelic architecture and strategies for susceptibility variant discovery. Genome medicine. 2009, 1 (7): 66. 10.1186/gm66.PubMedCentralCrossRefPubMed McCarthy MI: Exploring the unknown: assumptions about allelic architecture and strategies for susceptibility variant discovery. Genome medicine. 2009, 1 (7): 66. 10.1186/gm66.PubMedCentralCrossRefPubMed
36.
go back to reference Fearnhead NS, Winney B, Bodmer WF: Rare variant hypothesis for multifactorial inheritance: susceptibility to colorectal adenomas as a model. Cell cycle (Georgetown, Tex. 2005, 4 (4): 521-525. 10.4161/cc.4.4.1591.CrossRef Fearnhead NS, Winney B, Bodmer WF: Rare variant hypothesis for multifactorial inheritance: susceptibility to colorectal adenomas as a model. Cell cycle (Georgetown, Tex. 2005, 4 (4): 521-525. 10.4161/cc.4.4.1591.CrossRef
37.
go back to reference Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, Lohmueller KE, Adams MD, Schmidt S, Sninsky JJ, Sunyaev SR, White TJ, Nielsen R, Clark AG, Bustamante CD: Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS genetics. 2008, 4 (5): e1000083. 10.1371/journal.pgen.1000083.PubMedCentralCrossRefPubMed Boyko AR, Williamson SH, Indap AR, Degenhardt JD, Hernandez RD, Lohmueller KE, Adams MD, Schmidt S, Sninsky JJ, Sunyaev SR, White TJ, Nielsen R, Clark AG, Bustamante CD: Assessing the evolutionary impact of amino acid mutations in the human genome. PLoS genetics. 2008, 4 (5): e1000083. 10.1371/journal.pgen.1000083.PubMedCentralCrossRefPubMed
38.
go back to reference Kryukov GV, Pennacchio LA, Sunyaev SR: Most rare missense alleles are deleterious in humans: implications for complex disease and association studies. American journal of human genetics. 2007, 80 (4): 727-739. 10.1086/513473.PubMedCentralCrossRefPubMed Kryukov GV, Pennacchio LA, Sunyaev SR: Most rare missense alleles are deleterious in humans: implications for complex disease and association studies. American journal of human genetics. 2007, 80 (4): 727-739. 10.1086/513473.PubMedCentralCrossRefPubMed
39.
go back to reference Luca F, Bubba G, Basile M, Brdicka R, Michalodimitrakis E, Rickards O, Vershubsky G, Quintana-Murci L, Kozlov AI, Novelletto A: Multiple advantageous amino acid variants in the NAT2 gene in human populations. PloS one. 2008, 3 (9): e3136. 10.1371/journal.pone.0003136.PubMedCentralCrossRefPubMed Luca F, Bubba G, Basile M, Brdicka R, Michalodimitrakis E, Rickards O, Vershubsky G, Quintana-Murci L, Kozlov AI, Novelletto A: Multiple advantageous amino acid variants in the NAT2 gene in human populations. PloS one. 2008, 3 (9): e3136. 10.1371/journal.pone.0003136.PubMedCentralCrossRefPubMed
40.
go back to reference Patin E, Barreiro LB, Sabeti PC, Austerlitz F, Luca F, Sajantila A, Behar DM, Semino O, Sakuntabhai A, Guiso N, Gicquel B, McElreavey K, Harding RM, Heyer E, Quintana-Murci L: Deciphering the ancient and complex evolutionary history of human arylamine N-acetyltransferase genes. American journal of human genetics. 2006, 78 (3): 423-436. 10.1086/500614.PubMedCentralCrossRefPubMed Patin E, Barreiro LB, Sabeti PC, Austerlitz F, Luca F, Sajantila A, Behar DM, Semino O, Sakuntabhai A, Guiso N, Gicquel B, McElreavey K, Harding RM, Heyer E, Quintana-Murci L: Deciphering the ancient and complex evolutionary history of human arylamine N-acetyltransferase genes. American journal of human genetics. 2006, 78 (3): 423-436. 10.1086/500614.PubMedCentralCrossRefPubMed
41.
go back to reference Wilson JF, Weale ME, Smith AC, Gratrix F, Fletcher B, Thomas MG, Bradman N, Goldstein DB: Population genetic structure of variable drug response. Nature genetics. 2001, 29 (3): 265-269. 10.1038/ng761.CrossRefPubMed Wilson JF, Weale ME, Smith AC, Gratrix F, Fletcher B, Thomas MG, Bradman N, Goldstein DB: Population genetic structure of variable drug response. Nature genetics. 2001, 29 (3): 265-269. 10.1038/ng761.CrossRefPubMed
42.
go back to reference Leslie S, Donnelly P, McVean G: A statistical method for predicting classical HLA alleles from SNP data. American journal of human genetics. 2008, 82 (1): 48-56. 10.1016/j.ajhg.2007.09.001.PubMedCentralCrossRefPubMed Leslie S, Donnelly P, McVean G: A statistical method for predicting classical HLA alleles from SNP data. American journal of human genetics. 2008, 82 (1): 48-56. 10.1016/j.ajhg.2007.09.001.PubMedCentralCrossRefPubMed
43.
go back to reference de Bakker PI, McVean G, Sabeti PC, Miretti MM, Green T, Marchini J, Ke X, Monsuur AJ, Whittaker P, Delgado M, Morrison J, Richardson A, Walsh EC, Gao X, Galver L, Hart J, Hafler DA, Pericak-Vance M, Todd JA, Daly MJ, Trowsdale J, Wijmenga C, Vyse TJ, Beck S, Murray SS, Carrington M, Gregory S, Deloukas P, Rioux JD: A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nature genetics. 2006, 38 (10): 1166-1172. 10.1038/ng1885.PubMedCentralCrossRefPubMed de Bakker PI, McVean G, Sabeti PC, Miretti MM, Green T, Marchini J, Ke X, Monsuur AJ, Whittaker P, Delgado M, Morrison J, Richardson A, Walsh EC, Gao X, Galver L, Hart J, Hafler DA, Pericak-Vance M, Todd JA, Daly MJ, Trowsdale J, Wijmenga C, Vyse TJ, Beck S, Murray SS, Carrington M, Gregory S, Deloukas P, Rioux JD: A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nature genetics. 2006, 38 (10): 1166-1172. 10.1038/ng1885.PubMedCentralCrossRefPubMed
44.
go back to reference Kazeem GR, Cox C, Aponte J, Messenheimer J, Brazell C, Nelsen AC, Nelson MR, Foot E: High-resolution HLA genotyping and severe cutaneous adverse reactions in lamotrigine-treated patients. Pharmacogenetics and genomics. 2009, 19 (9): 661-665. 10.1097/FPC.0b013e32832c347d.CrossRefPubMed Kazeem GR, Cox C, Aponte J, Messenheimer J, Brazell C, Nelsen AC, Nelson MR, Foot E: High-resolution HLA genotyping and severe cutaneous adverse reactions in lamotrigine-treated patients. Pharmacogenetics and genomics. 2009, 19 (9): 661-665. 10.1097/FPC.0b013e32832c347d.CrossRefPubMed
45.
go back to reference Tassaneeyakul W, Jantararoungtong T, Chen P, Lin PY, Tiamkao S, Khunarkornsiri U, Chucherd P, Konyoung P, Vannaprasaht S, Choonhakarn C, Pisuttimarn P, Sangviroon A, Tassaneeyakul W: Strong association between HLA-B*5801 and allopurinol-induced Stevens-Johnson syndrome and toxic epidermal necrolysis in a Thai population. Pharmacogenetics and genomics. 2009, 19 (9): 704-709. 10.1097/FPC.0b013e328330a3b8.CrossRefPubMed Tassaneeyakul W, Jantararoungtong T, Chen P, Lin PY, Tiamkao S, Khunarkornsiri U, Chucherd P, Konyoung P, Vannaprasaht S, Choonhakarn C, Pisuttimarn P, Sangviroon A, Tassaneeyakul W: Strong association between HLA-B*5801 and allopurinol-induced Stevens-Johnson syndrome and toxic epidermal necrolysis in a Thai population. Pharmacogenetics and genomics. 2009, 19 (9): 704-709. 10.1097/FPC.0b013e328330a3b8.CrossRefPubMed
46.
go back to reference Zhuang JJ, Zondervan K, Nyberg F, Harbron C, Jawaid A, Cardon LR, Barratt BJ, Morris AP: Optimizing the power of genome-wide association studies by using publicly available reference samples to expand the control group. Genetic epidemiology. 2010,Advance Online. Zhuang JJ, Zondervan K, Nyberg F, Harbron C, Jawaid A, Cardon LR, Barratt BJ, Morris AP: Optimizing the power of genome-wide association studies by using publicly available reference samples to expand the control group. Genetic epidemiology. 2010,Advance Online.
47.
go back to reference Guan W, Liang L, Boehnke M, Abecasis GR: Genotype-based matching to correct for population stratification in large-scale case-control genetic association studies. Genetic epidemiology. 2009, 33 (6): 508-517. 10.1002/gepi.20403.PubMedCentralCrossRefPubMed Guan W, Liang L, Boehnke M, Abecasis GR: Genotype-based matching to correct for population stratification in large-scale case-control genetic association studies. Genetic epidemiology. 2009, 33 (6): 508-517. 10.1002/gepi.20403.PubMedCentralCrossRefPubMed
48.
go back to reference Luca D, Ringquist S, Klei L, Lee AB, Gieger C, Wichmann HE, Schreiber S, Krawczak M, Lu Y, Styche A, Devlin B, Roeder K, Trucco M: On the use of general control samples for genome-wide association studies: genetic matching highlights causal variants. American journal of human genetics. 2008, 82 (2): 453-463. 10.1016/j.ajhg.2007.11.003.PubMedCentralCrossRefPubMed Luca D, Ringquist S, Klei L, Lee AB, Gieger C, Wichmann HE, Schreiber S, Krawczak M, Lu Y, Styche A, Devlin B, Roeder K, Trucco M: On the use of general control samples for genome-wide association studies: genetic matching highlights causal variants. American journal of human genetics. 2008, 82 (2): 453-463. 10.1016/j.ajhg.2007.11.003.PubMedCentralCrossRefPubMed
49.
go back to reference Cann HM, de Toma C, Cazes L, Legrand MF, Morel V, Piouffre L, Bodmer J, Bodmer WF, Bonne-Tamir B, Cambon-Thomsen A, Chen Z, Chu J, Carcassi C, Contu L, Du R, Excoffier L, Ferrara GB, Friedlaender JS, Groot H, Gurwitz D, Jenkins T, Herrera RJ, Huang X, Kidd J, Kidd KK, Langaney A, Lin AA, Mehdi SQ, Parham P, Piazza A, Pistillo MP, Qian Y, Shu Q, Xu J, Zhu S, Weber JL, Greely HT, Feldman MW, Thomas G, Dausset J, Cavalli-Sforza LL: A human genome diversity cell line panel. Science (New York, NY. 2002, 296 (5566): 261-262.CrossRef Cann HM, de Toma C, Cazes L, Legrand MF, Morel V, Piouffre L, Bodmer J, Bodmer WF, Bonne-Tamir B, Cambon-Thomsen A, Chen Z, Chu J, Carcassi C, Contu L, Du R, Excoffier L, Ferrara GB, Friedlaender JS, Groot H, Gurwitz D, Jenkins T, Herrera RJ, Huang X, Kidd J, Kidd KK, Langaney A, Lin AA, Mehdi SQ, Parham P, Piazza A, Pistillo MP, Qian Y, Shu Q, Xu J, Zhu S, Weber JL, Greely HT, Feldman MW, Thomas G, Dausset J, Cavalli-Sforza LL: A human genome diversity cell line panel. Science (New York, NY. 2002, 296 (5566): 261-262.CrossRef
50.
go back to reference Strimmer K: fdrtool: a versatile R package for estimating local and tail area-based false discovery rates. Bioinformatics (Oxford, England). 2008, 24 (12): 1461-1462. 10.1093/bioinformatics/btn209.CrossRef Strimmer K: fdrtool: a versatile R package for estimating local and tail area-based false discovery rates. Bioinformatics (Oxford, England). 2008, 24 (12): 1461-1462. 10.1093/bioinformatics/btn209.CrossRef
Metadata
Title
Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe
Authors
Emmanuelle Génin
Martin Schumacher
Jean-Claude Roujeau
Luigi Naldi
Yvonne Liss
Rémi Kazma
Peggy Sekula
Alain Hovnanian
Maja Mockenhaupt
Publication date
01-12-2011
Publisher
BioMed Central
Published in
Orphanet Journal of Rare Diseases / Issue 1/2011
Electronic ISSN: 1750-1172
DOI
https://doi.org/10.1186/1750-1172-6-52

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