Skip to main content
Top
Published in: Virology Journal 1/2011

Open Access 01-12-2011 | Research

Loop-mediated isothermal amplification for detection of porcine circovirus type 2

Authors: Shun Zhou, Si Han, Jianli Shi, Jiaqiang Wu, Xiaoyuan Yuan, Xiaoyan Cong, Shaojian Xu, Xiaoyan Wu, Jun Li, Jinbao Wang

Published in: Virology Journal | Issue 1/2011

Login to get access

Abstract

Background

Porcine circovirus type 2 (PCV2) is the primary causative agent of the emerging swine disease known as postweaning multisystemic wasting syndrome (PMWS). Nowadays, polymerase chain reaction (PCR) is still the most widespread technique in pathogen detection. Loop-mediated isothermal amplification (LAMP), a novel nucleic acid amplification method developed in 2000, will possibly replace PCR in the field of detection. To establish a LAMP method for rapid detection of PCV2, two pairs of primers were designed specially from the open reading frame 2 (ORF2) sequences of PCV2. A LAMP method for rapid detection of PCV2 was established. To compare with PCR, sensitivity and specificity of LAMP were evaluated using the optimized reaction system. The LAMP products could be determined by agarose gel electrophoresis or adding SYBR Green I dye.

Results

The amplification of LAMP could be obtained at 63°C for 60 min. The detection limit was nearly 1 copy of DNA plasmid, more sensitive than PCR. There was no cross-reaction with porcine circovirus type 1 (PCV1), porcine pseudorabies virus (PRV) and porcine parvovirus (PPV) under the same conditions.

Conclusions

LAMP is an useful rapid detection method with high sensitivity and specificity for PCV2.
Appendix
Available only for authorised users
Literature
1.
go back to reference Tischer I, Gelderblom H, Vettermann W, Koch M: A very small porcine virus with a circular single-stranded DNA. Nature. 1982, 295: 64-66. 10.1038/295064a0.CrossRefPubMed Tischer I, Gelderblom H, Vettermann W, Koch M: A very small porcine virus with a circular single-stranded DNA. Nature. 1982, 295: 64-66. 10.1038/295064a0.CrossRefPubMed
2.
go back to reference Allan GM, McNeilly F, Kennedy S, Daft B, Clarke EG, Ellis JA, Haines DM, Meehan BM, Adair BM: Isolation of porcine circovirus-like viruses from pigs with a wasting disease in the United States of America and Europe. J Vet Diagn Invest. 1998, 10: 3-10. 10.1177/104063879801000102.CrossRefPubMed Allan GM, McNeilly F, Kennedy S, Daft B, Clarke EG, Ellis JA, Haines DM, Meehan BM, Adair BM: Isolation of porcine circovirus-like viruses from pigs with a wasting disease in the United States of America and Europe. J Vet Diagn Invest. 1998, 10: 3-10. 10.1177/104063879801000102.CrossRefPubMed
3.
go back to reference Segalés J, Rosell C, Domingo M: Pathological findings associated with naturally acquired porcine circovirus type 2 associated disease. Vet Microbiol. 2004, 98: 137-149. 10.1016/j.vetmic.2003.10.006.CrossRefPubMed Segalés J, Rosell C, Domingo M: Pathological findings associated with naturally acquired porcine circovirus type 2 associated disease. Vet Microbiol. 2004, 98: 137-149. 10.1016/j.vetmic.2003.10.006.CrossRefPubMed
4.
go back to reference Darwich L, Segalés J, Domingo M, Mateu E: Changes in CD4+,CD8+,CD4+CD8+,and Immunoglobulin M-Positive Peripheral Blood Mononuclear Cells of Postweaning Multisystemic Wasting Syndrome-Affected Pigs and Age-Matched Uninfected Wasted and Healthy Pigs Correlate with Lesions and Porcine Circovirus Type 2 Load in Lymphoid Tissues. Clin and Diag Lab Immun. 2002, 9: 236-242. Darwich L, Segalés J, Domingo M, Mateu E: Changes in CD4+,CD8+,CD4+CD8+,and Immunoglobulin M-Positive Peripheral Blood Mononuclear Cells of Postweaning Multisystemic Wasting Syndrome-Affected Pigs and Age-Matched Uninfected Wasted and Healthy Pigs Correlate with Lesions and Porcine Circovirus Type 2 Load in Lymphoid Tissues. Clin and Diag Lab Immun. 2002, 9: 236-242.
5.
go back to reference Guo LJ, Lu YH, Wei YW, Huang LP, Liu CM: Porcine circovirus type 2 (PCV2): genetic variation and newly emerging genotypes in China. Virol J. 2010, 7: 273-10.1186/1743-422X-7-273.PubMedCentralCrossRefPubMed Guo LJ, Lu YH, Wei YW, Huang LP, Liu CM: Porcine circovirus type 2 (PCV2): genetic variation and newly emerging genotypes in China. Virol J. 2010, 7: 273-10.1186/1743-422X-7-273.PubMedCentralCrossRefPubMed
6.
go back to reference Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T: Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28: E63-10.1093/nar/28.12.e63.PubMedCentralCrossRefPubMed Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T: Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28: E63-10.1093/nar/28.12.e63.PubMedCentralCrossRefPubMed
7.
go back to reference Iwamoto T, Sonobe T, Hayashi K: Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol. 2003, 41: 2616-2622. 10.1128/JCM.41.6.2616-2622.2003.PubMedCentralCrossRefPubMed Iwamoto T, Sonobe T, Hayashi K: Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol. 2003, 41: 2616-2622. 10.1128/JCM.41.6.2616-2622.2003.PubMedCentralCrossRefPubMed
8.
go back to reference Fukuta S, Kato S, Yoshida K, Mizukami Y, Ishida A, Ueda J, Kanbe M, Ishimoto Y: Detection of tomato yellow leaf curl virus by loop-mediated isothermal amplification reaction. J Virol Methods. 2003, 112: 35-40. 10.1016/S0166-0934(03)00187-3.CrossRefPubMed Fukuta S, Kato S, Yoshida K, Mizukami Y, Ishida A, Ueda J, Kanbe M, Ishimoto Y: Detection of tomato yellow leaf curl virus by loop-mediated isothermal amplification reaction. J Virol Methods. 2003, 112: 35-40. 10.1016/S0166-0934(03)00187-3.CrossRefPubMed
9.
go back to reference Kuboki N, Inoue N, Sakurai T, Di Cello F, Grab DJ, Suzuki H, Sugimoto C, Igarashi I: Loop-mediated isothermal amplification for detection of African trypanosomes. J Clin Microbiol. 2003, 41: 5517-5524. 10.1128/JCM.41.12.5517-5524.2003.PubMedCentralCrossRefPubMed Kuboki N, Inoue N, Sakurai T, Di Cello F, Grab DJ, Suzuki H, Sugimoto C, Igarashi I: Loop-mediated isothermal amplification for detection of African trypanosomes. J Clin Microbiol. 2003, 41: 5517-5524. 10.1128/JCM.41.12.5517-5524.2003.PubMedCentralCrossRefPubMed
10.
go back to reference Hamel AL, Lin LL, Nayar GP: Nucleotide sequence of porcine circovirus associated with postweaning multisystemic wasting syndrome in pigs. J Virol. 1998, 72: 5262-5267.PubMedCentralPubMed Hamel AL, Lin LL, Nayar GP: Nucleotide sequence of porcine circovirus associated with postweaning multisystemic wasting syndrome in pigs. J Virol. 1998, 72: 5262-5267.PubMedCentralPubMed
11.
go back to reference Mankertz A, Mankertz J, Wolf K, Buhk HJ: Identification of a protein essential for replication of porcine circovirus. J Gen Virol. 1998, 79: 381-384.CrossRefPubMed Mankertz A, Mankertz J, Wolf K, Buhk HJ: Identification of a protein essential for replication of porcine circovirus. J Gen Virol. 1998, 79: 381-384.CrossRefPubMed
12.
go back to reference Cheung AK: Transcriptional analysis of porcine circovirus type 2. Virology. 2003, 305: 168-180. 10.1006/viro.2002.1733.CrossRefPubMed Cheung AK: Transcriptional analysis of porcine circovirus type 2. Virology. 2003, 305: 168-180. 10.1006/viro.2002.1733.CrossRefPubMed
13.
go back to reference Mori Y, Hirano T, Notomi T: Sequence specific visual detection of LAMP reactions by addition of cationic polymers. BMC Biotechnol. 2006, 6: 3-10.1186/1472-6750-6-3.PubMedCentralCrossRefPubMed Mori Y, Hirano T, Notomi T: Sequence specific visual detection of LAMP reactions by addition of cationic polymers. BMC Biotechnol. 2006, 6: 3-10.1186/1472-6750-6-3.PubMedCentralCrossRefPubMed
14.
go back to reference Enosawa M, Kageyama S, Sawai K, Watanabe K, Notomi T, Onoe S, Mori Y, Yokomizo Y: Use of loop-mediated isothermal amplification of the IS900 sequence for rapid detection of cultured Mycobacterium avium subsp. paratuberculosis. J Clin Microbiol. 2003, 41: 4359-4365. 10.1128/JCM.41.9.4359-4365.2003.PubMedCentralCrossRefPubMed Enosawa M, Kageyama S, Sawai K, Watanabe K, Notomi T, Onoe S, Mori Y, Yokomizo Y: Use of loop-mediated isothermal amplification of the IS900 sequence for rapid detection of cultured Mycobacterium avium subsp. paratuberculosis. J Clin Microbiol. 2003, 41: 4359-4365. 10.1128/JCM.41.9.4359-4365.2003.PubMedCentralCrossRefPubMed
15.
go back to reference Nagamine K, Hase T, Notomi T: Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes. 2002, 16: 223-229. 10.1006/mcpr.2002.0415.CrossRefPubMed Nagamine K, Hase T, Notomi T: Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes. 2002, 16: 223-229. 10.1006/mcpr.2002.0415.CrossRefPubMed
16.
go back to reference Chen HT, Zhang J, Sun DH, Chu YF, Cai XP, Liu XT, Luo XN, Liu Q, Liu YS: Rapid detection of porcine circovirus type 2 by loop-mediated isothermal amplification. J Virol Methods. 2008, 149: 264-268. 10.1016/j.jviromet.2008.01.023.CrossRefPubMed Chen HT, Zhang J, Sun DH, Chu YF, Cai XP, Liu XT, Luo XN, Liu Q, Liu YS: Rapid detection of porcine circovirus type 2 by loop-mediated isothermal amplification. J Virol Methods. 2008, 149: 264-268. 10.1016/j.jviromet.2008.01.023.CrossRefPubMed
17.
go back to reference Chen C, Cui S, Zhang C, Li J, Wang J: Development and validation of reverse transcription loopmediated isothermal amplification for detection of PRRSV. Virus Genes. 2010, 40: 76-83. 10.1007/s11262-009-0419-1.CrossRefPubMed Chen C, Cui S, Zhang C, Li J, Wang J: Development and validation of reverse transcription loopmediated isothermal amplification for detection of PRRSV. Virus Genes. 2010, 40: 76-83. 10.1007/s11262-009-0419-1.CrossRefPubMed
18.
go back to reference En FX, Wei X, Jian L, Qin C: Loop-mediated isothermal amplification establishment for detection of pseudorabies virus. J Virol Methods. 2008, 151: 35-39. 10.1016/j.jviromet.2008.03.028.CrossRefPubMed En FX, Wei X, Jian L, Qin C: Loop-mediated isothermal amplification establishment for detection of pseudorabies virus. J Virol Methods. 2008, 151: 35-39. 10.1016/j.jviromet.2008.03.028.CrossRefPubMed
19.
go back to reference Chen HT, Zhang J, Yang SH, Ma LN, Ma YP, Liu XT, Cai XP, Zhang YG, Liu YS: Rapid detection of porcine parvovirus DNA by sensitive loop-mediated isothermal amplification. J Virol Methods. 2009, 158: 100-103. 10.1016/j.jviromet.2009.02.005.CrossRefPubMed Chen HT, Zhang J, Yang SH, Ma LN, Ma YP, Liu XT, Cai XP, Zhang YG, Liu YS: Rapid detection of porcine parvovirus DNA by sensitive loop-mediated isothermal amplification. J Virol Methods. 2009, 158: 100-103. 10.1016/j.jviromet.2009.02.005.CrossRefPubMed
Metadata
Title
Loop-mediated isothermal amplification for detection of porcine circovirus type 2
Authors
Shun Zhou
Si Han
Jianli Shi
Jiaqiang Wu
Xiaoyuan Yuan
Xiaoyan Cong
Shaojian Xu
Xiaoyan Wu
Jun Li
Jinbao Wang
Publication date
01-12-2011
Publisher
BioMed Central
Published in
Virology Journal / Issue 1/2011
Electronic ISSN: 1743-422X
DOI
https://doi.org/10.1186/1743-422X-8-497

Other articles of this Issue 1/2011

Virology Journal 1/2011 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.