Skip to main content
Top
Published in: Virology Journal 1/2014

Open Access 01-12-2014 | Research

A description of the hepatitis B virus genomic background in a high-prevalence area in China

Authors: Xiaoming Chen, Jie Gao, Zhaohua Ji, Weilu Zhang, Lei Zhang, Rui Xu, Jingxia Zhang, Fei Li, Shi Li, Shijie Hu, Lei Shang, ZhongJun Shao, Yongping Yan

Published in: Virology Journal | Issue 1/2014

Login to get access

Abstract

Background

Hepatitis B (HB) is an important disease worldwide. Almost 350 million people are positive for Hepatitis B virus surface antigen (HBsAg), and one-third of them live in China. According to a nation-wide serosurvey in China in 2006, the prevalence of HBsAg was higher in Northwest China than in other areas. However, the epidemic HBV strains in this area are poorly studied.

Results

In this study, 242 complete hepatitis B virus (HBV) genome sequences were obtained from HBV asymptomatic carriers in major cities of Northwest China. The 242 HBV sequences clustered into genotypes B, C and D. Through comparison of the genotype consensus sequences, 158 genotype-dependent positions were observed in P, S and X ORFs. Clinically relevant mutation screening in this study revealed that no HBV antiviral drug resistance mutations were observed and the vaccination failure mutations were heavily underrepresented.

Conclusions

The role of genotype D strains in HBV prevalence should not be ignored in Northwest China. Due to low prevalence of vaccination failure mutations, it can be inferred that the genotype B, C and D strains in Northwest China may have less likelihood of vaccine escape.
Appendix
Available only for authorised users
Literature
1.
2.
go back to reference Jazayeri MS, Basuni AA, Cooksley G, Locarnini S, Carman WF: Hepatitis B virus genotypes, core gene variability and ethnicity in the Pacific region. J Hepatol. 2004, 41: 139-146. 10.1016/j.jhep.2004.03.025.PubMedCrossRef Jazayeri MS, Basuni AA, Cooksley G, Locarnini S, Carman WF: Hepatitis B virus genotypes, core gene variability and ethnicity in the Pacific region. J Hepatol. 2004, 41: 139-146. 10.1016/j.jhep.2004.03.025.PubMedCrossRef
3.
go back to reference Liang X, Bi S, Yang W, Wang L, Cui G, Cui F, Zhang Y, Liu J, Gong X, Chen Y, Wang F, Zheng H, Wang F, Guo J, Jia Z, Ma J, Wang H, Luo H, Li L, Jin S, Hadler SC, Wang Y: Epidemiological serosurvey of hepatitis B in China--declining HBV prevalence due to hepatitis B vaccination. Vaccine. 2009, 27: 6550-6557. 10.1016/j.vaccine.2009.08.048.PubMedCrossRef Liang X, Bi S, Yang W, Wang L, Cui G, Cui F, Zhang Y, Liu J, Gong X, Chen Y, Wang F, Zheng H, Wang F, Guo J, Jia Z, Ma J, Wang H, Luo H, Li L, Jin S, Hadler SC, Wang Y: Epidemiological serosurvey of hepatitis B in China--declining HBV prevalence due to hepatitis B vaccination. Vaccine. 2009, 27: 6550-6557. 10.1016/j.vaccine.2009.08.048.PubMedCrossRef
4.
go back to reference Cheng H, Su H, Wang S, Shao Z, Men K, Li M, Li S, Zhang J, Xu J, Zhang H, Yan Y, Xu D: Association between genomic heterogeneity of hepatitis B virus and intrauterine infection. Virology. 2009, 387: 168-175. 10.1016/j.virol.2009.02.015.PubMedCrossRef Cheng H, Su H, Wang S, Shao Z, Men K, Li M, Li S, Zhang J, Xu J, Zhang H, Yan Y, Xu D: Association between genomic heterogeneity of hepatitis B virus and intrauterine infection. Virology. 2009, 387: 168-175. 10.1016/j.virol.2009.02.015.PubMedCrossRef
5.
go back to reference Zhou B, Xiao L, Wang Z, Chang ET, Chen J, Hou J: Geographical and ethnic distribution of the HBV C/D recombinant on the Qinghai-Tibet Plateau. PLoS One. 2011, 6: e18708-10.1371/journal.pone.0018708.PubMedPubMedCentralCrossRef Zhou B, Xiao L, Wang Z, Chang ET, Chen J, Hou J: Geographical and ethnic distribution of the HBV C/D recombinant on the Qinghai-Tibet Plateau. PLoS One. 2011, 6: e18708-10.1371/journal.pone.0018708.PubMedPubMedCentralCrossRef
6.
go back to reference Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011, 28: 2731-2739. 10.1093/molbev/msr121.PubMedPubMedCentralCrossRef Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011, 28: 2731-2739. 10.1093/molbev/msr121.PubMedPubMedCentralCrossRef
7.
go back to reference Walewski JL, Gutierrez JA, Branch-Elliman W, Stump DD, Keller TR, Rodriguez A, Benson G, Branch AD: Mutation Master: profiles of substitutions in hepatitis C virus RNA of the core, alternate reading frame, and NS2 coding regions. RNA. 2002, 8: 557-571. 10.1017/S1355838202029023.PubMedPubMedCentralCrossRef Walewski JL, Gutierrez JA, Branch-Elliman W, Stump DD, Keller TR, Rodriguez A, Benson G, Branch AD: Mutation Master: profiles of substitutions in hepatitis C virus RNA of the core, alternate reading frame, and NS2 coding regions. RNA. 2002, 8: 557-571. 10.1017/S1355838202029023.PubMedPubMedCentralCrossRef
8.
go back to reference Norder H, Courouce AM, Magnius LO: Molecular basis of hepatitis B virus serotype variations within the four major subtypes. J Gen Virol. 1992, 73 (Pt 12): 3141-3145.PubMedCrossRef Norder H, Courouce AM, Magnius LO: Molecular basis of hepatitis B virus serotype variations within the four major subtypes. J Gen Virol. 1992, 73 (Pt 12): 3141-3145.PubMedCrossRef
9.
go back to reference Lada O, Benhamou Y, Cahour A, Katlama C, Poynard T, Thibault V: In vitro susceptibility of lamivudine-resistant hepatitis B virus to adefovir and tenofovir. Antivir Ther. 2004, 9: 353-363.PubMed Lada O, Benhamou Y, Cahour A, Katlama C, Poynard T, Thibault V: In vitro susceptibility of lamivudine-resistant hepatitis B virus to adefovir and tenofovir. Antivir Ther. 2004, 9: 353-363.PubMed
10.
go back to reference Chotiyaputta W, Lok AS: Hepatitis B virus variants. Nat Rev Gastroenterol Hepatol. 2009, 6: 453-462. 10.1038/nrgastro.2009.107.PubMedCrossRef Chotiyaputta W, Lok AS: Hepatitis B virus variants. Nat Rev Gastroenterol Hepatol. 2009, 6: 453-462. 10.1038/nrgastro.2009.107.PubMedCrossRef
11.
go back to reference Hu Q, Huang JG, Lei YC, Huang HP, Yang Y, Yang DL: [Detection of mutants of the “a” determinant region of hepatitis B surface antigen S gene among Wuhan childhood patients]. Zhonghua Gan Zang Bing Za Zhi. 2005, 13: 594-596.PubMed Hu Q, Huang JG, Lei YC, Huang HP, Yang Y, Yang DL: [Detection of mutants of the “a” determinant region of hepatitis B surface antigen S gene among Wuhan childhood patients]. Zhonghua Gan Zang Bing Za Zhi. 2005, 13: 594-596.PubMed
12.
go back to reference Hu XB, Yue QH, Zhang XQ, Xu XQ, Wen Y, Chen YZ, Cheng XD, Yang L, Mu SJ: Hepatitis B virus genotypes and evolutionary profiles from blood donors from the northwest region of China. Virol J. 2009, 6: 199-10.1186/1743-422X-6-199.PubMedPubMedCentralCrossRef Hu XB, Yue QH, Zhang XQ, Xu XQ, Wen Y, Chen YZ, Cheng XD, Yang L, Mu SJ: Hepatitis B virus genotypes and evolutionary profiles from blood donors from the northwest region of China. Virol J. 2009, 6: 199-10.1186/1743-422X-6-199.PubMedPubMedCentralCrossRef
13.
go back to reference Ding X, Mizokami M, Yao G, Xu B, Orito E, Ueda R, Nakanishi M: Hepatitis B virus genotype distribution among chronic hepatitis B virus carriers in Shanghai, China. Intervirology. 2001, 44: 43-47. 10.1159/000050029.PubMedCrossRef Ding X, Mizokami M, Yao G, Xu B, Orito E, Ueda R, Nakanishi M: Hepatitis B virus genotype distribution among chronic hepatitis B virus carriers in Shanghai, China. Intervirology. 2001, 44: 43-47. 10.1159/000050029.PubMedCrossRef
14.
go back to reference Zang J, Jiang SY, Wang XW, Wang F, Bian T, Mu ZY, Zhang Y: [Investigation on distribution of HBV genotype and serotype from Tibetan in Tongde, Qinghai]. Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi. 2009, 23: 2-4.PubMed Zang J, Jiang SY, Wang XW, Wang F, Bian T, Mu ZY, Zhang Y: [Investigation on distribution of HBV genotype and serotype from Tibetan in Tongde, Qinghai]. Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi. 2009, 23: 2-4.PubMed
15.
go back to reference Delwart E, Slikas E, Stramer SL, Kamel H, Kessler D, Krysztof D, Tobler LH, Carrick DM, Steele W, Todd D, Wright DJ, Kleinman SH, Busch MP: Genetic diversity of recently acquired and prevalent HIV, hepatitis B virus, and hepatitis C virus infections in US blood donors. J Infect Dis. 2012, 205: 875-885. 10.1093/infdis/jir862.PubMedPubMedCentralCrossRef Delwart E, Slikas E, Stramer SL, Kamel H, Kessler D, Krysztof D, Tobler LH, Carrick DM, Steele W, Todd D, Wright DJ, Kleinman SH, Busch MP: Genetic diversity of recently acquired and prevalent HIV, hepatitis B virus, and hepatitis C virus infections in US blood donors. J Infect Dis. 2012, 205: 875-885. 10.1093/infdis/jir862.PubMedPubMedCentralCrossRef
16.
go back to reference Durantel D: Fitness and infectivity of drug-resistant and cross-resistant hepatitis B virus mutants: why and how is it studied?. Antivir Ther. 2010, 15: 521-527. 10.3851/IMP1551.PubMedPubMedCentralCrossRef Durantel D: Fitness and infectivity of drug-resistant and cross-resistant hepatitis B virus mutants: why and how is it studied?. Antivir Ther. 2010, 15: 521-527. 10.3851/IMP1551.PubMedPubMedCentralCrossRef
17.
go back to reference Yong-Lin Y, Qiang F, Ming-Shun Z, Jie C, Gui-Ming M, Zu-Hu H, Xu-Bing C: Hepatitis B surface antigen variants in voluntary blood donors in Nanjing. China Virol J. 2012, 9: 82-10.1186/1743-422X-9-82.PubMedCrossRef Yong-Lin Y, Qiang F, Ming-Shun Z, Jie C, Gui-Ming M, Zu-Hu H, Xu-Bing C: Hepatitis B surface antigen variants in voluntary blood donors in Nanjing. China Virol J. 2012, 9: 82-10.1186/1743-422X-9-82.PubMedCrossRef
18.
go back to reference Gao ZY, Li T, Wang J, Du JM, Li YJ, Li J, Lu FM, Zhuang H: Mutations in preS genes of genotype C hepatitis B virus in patients with chronic hepatitis B and hepatocellular carcinoma. J Gastroenterol. 2007, 42: 761-768. 10.1007/s00535-007-2085-1.PubMedCrossRef Gao ZY, Li T, Wang J, Du JM, Li YJ, Li J, Lu FM, Zhuang H: Mutations in preS genes of genotype C hepatitis B virus in patients with chronic hepatitis B and hepatocellular carcinoma. J Gastroenterol. 2007, 42: 761-768. 10.1007/s00535-007-2085-1.PubMedCrossRef
19.
go back to reference Zhang D, Dong P, Zhang K, Deng L, Bach C, Chen W, Li F, Protzer U, Ding H, Zeng C: Whole genome HBV deletion profiles and the accumulation of preS deletion mutant during antiviral treatment. BMC Microbiol. 2012, 12: 307-10.1186/1471-2180-12-307.PubMedPubMedCentralCrossRef Zhang D, Dong P, Zhang K, Deng L, Bach C, Chen W, Li F, Protzer U, Ding H, Zeng C: Whole genome HBV deletion profiles and the accumulation of preS deletion mutant during antiviral treatment. BMC Microbiol. 2012, 12: 307-10.1186/1471-2180-12-307.PubMedPubMedCentralCrossRef
20.
go back to reference Huang X, Qin Y, Li W, Shi Q, Xue Y, Li J, Liu C, Hollinger FB, Shen Q: Molecular analysis of the hepatitis B virus presurface and surface gene in patients from eastern China with occult hepatitis B. J Med Virol. 2013, 85: 979-986. 10.1002/jmv.23556.PubMedCrossRef Huang X, Qin Y, Li W, Shi Q, Xue Y, Li J, Liu C, Hollinger FB, Shen Q: Molecular analysis of the hepatitis B virus presurface and surface gene in patients from eastern China with occult hepatitis B. J Med Virol. 2013, 85: 979-986. 10.1002/jmv.23556.PubMedCrossRef
21.
go back to reference Golsaz Shirazi F, Amiri MM, Mohammadi H, Bayat AA, Roohi A, Khoshnoodi J, Zarnani AH, Jeddi-Tehrani M, Kardar GA, Shokri F: Construction and Expression of Hepatitis B Surface Antigen Escape Variants within the “a” Determinant by Site Directed Mutagenesis. Iran J Immunol. 2013, 10: 127-138.PubMed Golsaz Shirazi F, Amiri MM, Mohammadi H, Bayat AA, Roohi A, Khoshnoodi J, Zarnani AH, Jeddi-Tehrani M, Kardar GA, Shokri F: Construction and Expression of Hepatitis B Surface Antigen Escape Variants within the “a” Determinant by Site Directed Mutagenesis. Iran J Immunol. 2013, 10: 127-138.PubMed
Metadata
Title
A description of the hepatitis B virus genomic background in a high-prevalence area in China
Authors
Xiaoming Chen
Jie Gao
Zhaohua Ji
Weilu Zhang
Lei Zhang
Rui Xu
Jingxia Zhang
Fei Li
Shi Li
Shijie Hu
Lei Shang
ZhongJun Shao
Yongping Yan
Publication date
01-12-2014
Publisher
BioMed Central
Published in
Virology Journal / Issue 1/2014
Electronic ISSN: 1743-422X
DOI
https://doi.org/10.1186/1743-422X-11-101

Other articles of this Issue 1/2014

Virology Journal 1/2014 Go to the issue