Skip to main content
Top
Published in: Journal of Translational Medicine 1/2012

Open Access 01-12-2012 | Research

Biomarkers on melanoma patient T Cells associated with ipilimumab treatment

Authors: Wenshi Wang, Daohai Yu, Amod A Sarnaik, Bin Yu, Maclean Hall, Dawn Morelli, Yonghong Zhang, Xiuhua Zhao, Jeffrey S Weber

Published in: Journal of Translational Medicine | Issue 1/2012

Login to get access

Abstract

Background

Ipilimumab induces long-lasting clinical responses in a minority of patients with metastatic melanoma. To better understand the mechanism(s) of action and to identify novel biomarkers associated with the clinical benefit and toxicity of ipilimumab, baseline characteristics and changes in CD4+ and CD8+ T cells from melanoma patients receiving ipilimumab were characterized by gene profiling and flow cytometry.

Methods

Microarray analysis of flow-cytometry purified CD4+ and CD8+ T cells was employed to assess gene profiling changes induced by ipilimumab. Selected molecules were further investigated by flow cytometry on pre, 3-month and 6-month post-treatment specimens.

Results

Ipilimumab up-regulated Ki67 and ICOS on CD4+ and CD8+ cells at both 3- and 6-month post ipilimumab (p ≤ 0.001), decreased CCR7 and CD25 on CD8+ at 3-month post ipilimumab (p ≤ 0.02), and increased Gata3 in CD4+ and CD8+ cells at 6-month post ipilimumab (p ≤ 0.001). Increased EOMES+CD8+, GranzymeB+EOMES+CD8+ and decreased Ki67+EOMES+CD4+ T cells at 6 months were significantly associated with relapse (all p ≤ 0.03). Decreased Ki67+CD8+ T cells were significantly associated with the development of irAE (p = 0.02). At baseline, low Ki67+EOMES+CD8+ T cells were associated with relapse (p ≤ 0.001), and low Ki67+EOMES+CD4+ T cells were associated with irAE (p ≤ 0.008).

Conclusions

Up-regulation of proliferation and activation signals in CD4+ and CD8+ T cells were pharmacodynamic markers for ipilimumab. Ki67+EOMES+CD8+ and Ki67+EOMES+CD4+T cells at baseline merit further testing as biomarkers associated with outcome and irAEs, respectively.
Appendix
Available only for authorised users
Literature
1.
go back to reference Melero I, Hervas-Stubbs S, Glennie M, Pardoll DM, Chen L: Immunostimulatory monoclonal antibodies for cancer therapy. Nature Reviews. Cancer. 2007, 7: 95-106. 10.1038/nrc2051.CrossRefPubMed Melero I, Hervas-Stubbs S, Glennie M, Pardoll DM, Chen L: Immunostimulatory monoclonal antibodies for cancer therapy. Nature Reviews. Cancer. 2007, 7: 95-106. 10.1038/nrc2051.CrossRefPubMed
2.
go back to reference Chambers CA, Kuhns MS, Egen JG, Allison JP: CTLA-4-mediated inhibition in regulation of T cell responses: mechanisms and manipulation in tumor immunotherapy. Annual Review of Immunology. 2001, 19: 565-594. 10.1146/annurev.immunol.19.1.565.CrossRefPubMed Chambers CA, Kuhns MS, Egen JG, Allison JP: CTLA-4-mediated inhibition in regulation of T cell responses: mechanisms and manipulation in tumor immunotherapy. Annual Review of Immunology. 2001, 19: 565-594. 10.1146/annurev.immunol.19.1.565.CrossRefPubMed
3.
go back to reference Greenwald RJ, Boussiotis VA, Lorsbach RB, Abbas AK, Sharpe AH: CTLA-4 regulates induction of anergy in vivo. Immunity. 2001, 14: 145-155. 10.1016/S1074-7613(01)00097-8.CrossRefPubMed Greenwald RJ, Boussiotis VA, Lorsbach RB, Abbas AK, Sharpe AH: CTLA-4 regulates induction of anergy in vivo. Immunity. 2001, 14: 145-155. 10.1016/S1074-7613(01)00097-8.CrossRefPubMed
4.
go back to reference Schneider H, Valk E, Leung R, Rudd CE: CTLA-4 activation of phosphatidylinositol 3-kinase (PI 3-K) and protein kinase B (PKB/AKT) sustains T-cell anergy without cell death. PLoS One. 2008, 3: e3842-10.1371/journal.pone.0003842.CrossRefPubMedPubMedCentral Schneider H, Valk E, Leung R, Rudd CE: CTLA-4 activation of phosphatidylinositol 3-kinase (PI 3-K) and protein kinase B (PKB/AKT) sustains T-cell anergy without cell death. PLoS One. 2008, 3: e3842-10.1371/journal.pone.0003842.CrossRefPubMedPubMedCentral
5.
go back to reference Egen JG, Allison JP: Cytotoxic T lymphocyte antigen-4 accumulation in the immunological synapse is regulated by TCR signal strength. Immunity. 2002, 16: 23-35. 10.1016/S1074-7613(01)00259-X.CrossRefPubMed Egen JG, Allison JP: Cytotoxic T lymphocyte antigen-4 accumulation in the immunological synapse is regulated by TCR signal strength. Immunity. 2002, 16: 23-35. 10.1016/S1074-7613(01)00259-X.CrossRefPubMed
6.
go back to reference Egen JG, Kuhns MS, Allison JP: CTLA-4: new insights into its biological function and use in tumor immunotherapy. Nature Immunology. 2002, 3: 611-618. 10.1038/ni0702-611.CrossRefPubMed Egen JG, Kuhns MS, Allison JP: CTLA-4: new insights into its biological function and use in tumor immunotherapy. Nature Immunology. 2002, 3: 611-618. 10.1038/ni0702-611.CrossRefPubMed
7.
go back to reference Leach DR, Krummel MF, Allison JP: Enhancement of antitumor immunity by CTLA-4 blockade. Science. 1996, 271: 1734-1736. 10.1126/science.271.5256.1734.CrossRefPubMed Leach DR, Krummel MF, Allison JP: Enhancement of antitumor immunity by CTLA-4 blockade. Science. 1996, 271: 1734-1736. 10.1126/science.271.5256.1734.CrossRefPubMed
8.
go back to reference Quezada SA, Peggs KS, Curran MA, Allison JP: CTLA4 blockade and GM-CSF combination immunotherapy alters the intratumor balance of effector and regulatory T cells. The Journal of Clinical Investigation. 2006, 116: 1935-1945. 10.1172/JCI27745.CrossRefPubMedPubMedCentral Quezada SA, Peggs KS, Curran MA, Allison JP: CTLA4 blockade and GM-CSF combination immunotherapy alters the intratumor balance of effector and regulatory T cells. The Journal of Clinical Investigation. 2006, 116: 1935-1945. 10.1172/JCI27745.CrossRefPubMedPubMedCentral
9.
go back to reference Chen L, Ashe S, Brady WA, Hellstrom I, Hellstrom KE, Ledbetter JA: Costimulation of antitumor immunity by the B7 counterreceptor for the T lymphocyte molecules CD28 and CTLA-4. Cell. 1992, 71: 1093-1102. 10.1016/S0092-8674(05)80059-5.CrossRefPubMed Chen L, Ashe S, Brady WA, Hellstrom I, Hellstrom KE, Ledbetter JA: Costimulation of antitumor immunity by the B7 counterreceptor for the T lymphocyte molecules CD28 and CTLA-4. Cell. 1992, 71: 1093-1102. 10.1016/S0092-8674(05)80059-5.CrossRefPubMed
10.
go back to reference van Elsas A, Hurwitz AA, Allison JP: Combination immunotherapy of B16 melanoma using anti-cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) and granulocyte/macrophage colony-stimulating factor (GM-CSF)-producing vaccines induces rejection of subcutaneous and metastatic tumors accompanied by autoimmune depigmentation. The Journal of Experimental Medicine. 1999, 190: 355-366. 10.1084/jem.190.3.355.CrossRefPubMedPubMedCentral van Elsas A, Hurwitz AA, Allison JP: Combination immunotherapy of B16 melanoma using anti-cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) and granulocyte/macrophage colony-stimulating factor (GM-CSF)-producing vaccines induces rejection of subcutaneous and metastatic tumors accompanied by autoimmune depigmentation. The Journal of Experimental Medicine. 1999, 190: 355-366. 10.1084/jem.190.3.355.CrossRefPubMedPubMedCentral
11.
go back to reference Ueda H, Howson JM, Esposito L, Heward J, Snook H, Chamberlain G: Association of the T-cell regulatory gene CTLA4 with susceptibility to autoimmune disease. Nature. 2003, 423: 506-511. 10.1038/nature01621.CrossRefPubMed Ueda H, Howson JM, Esposito L, Heward J, Snook H, Chamberlain G: Association of the T-cell regulatory gene CTLA4 with susceptibility to autoimmune disease. Nature. 2003, 423: 506-511. 10.1038/nature01621.CrossRefPubMed
12.
go back to reference Waterhouse P, Penninger JM, Timms E, Wakeham A, Shahinian A, Lee KP: Lymphoproliferative disorders with early lethality in mice deficient in Ctla-4. Science. 1995, 270: 985-988. 10.1126/science.270.5238.985.CrossRefPubMed Waterhouse P, Penninger JM, Timms E, Wakeham A, Shahinian A, Lee KP: Lymphoproliferative disorders with early lethality in mice deficient in Ctla-4. Science. 1995, 270: 985-988. 10.1126/science.270.5238.985.CrossRefPubMed
13.
go back to reference Wolchok JD, Saenger Y: The mechanism of anti-CTLA-4 activity and the negative regulation of T-cell activation. The Oncologist. 2008, 13 (Suppl 4): 2-9.CrossRefPubMed Wolchok JD, Saenger Y: The mechanism of anti-CTLA-4 activity and the negative regulation of T-cell activation. The Oncologist. 2008, 13 (Suppl 4): 2-9.CrossRefPubMed
14.
go back to reference Maker AV, Attia P, Rosenberg SA: Analysis of the cellular mechanism of antitumor responses and autoimmunity in patients treated with CTLA-4 blockade. Journal of Immunology. 2005, 175: 7746-7754.CrossRef Maker AV, Attia P, Rosenberg SA: Analysis of the cellular mechanism of antitumor responses and autoimmunity in patients treated with CTLA-4 blockade. Journal of Immunology. 2005, 175: 7746-7754.CrossRef
15.
go back to reference Ribas A: Overcoming immunologic tolerance to melanoma: targeting CTLA-4 with tremelimumab (CP-675,206). The Oncologist. 2008, 13 (Suppl 4): 10-15.CrossRefPubMed Ribas A: Overcoming immunologic tolerance to melanoma: targeting CTLA-4 with tremelimumab (CP-675,206). The Oncologist. 2008, 13 (Suppl 4): 10-15.CrossRefPubMed
16.
go back to reference Wolchok JD, Neyns B, Linette G, Negrier S, Lutzky J, Thomas L: Ipilimumab monotherapy in patients with pretreated advanced melanoma: a randomised, double-blind, multicentre, phase 2, dose-ranging study. The Lancet Oncology. 2011, 11 (2): 155-164.CrossRef Wolchok JD, Neyns B, Linette G, Negrier S, Lutzky J, Thomas L: Ipilimumab monotherapy in patients with pretreated advanced melanoma: a randomised, double-blind, multicentre, phase 2, dose-ranging study. The Lancet Oncology. 2011, 11 (2): 155-164.CrossRef
17.
go back to reference Weber J, Thompson JA, Hamid O, Minor D, Amin A, Ron I: A randomized, double-blind, placebo-controlled, phase II study comparing the tolerability and efficacy of ipilimumab administered with or without prophylactic budesonide in patients with unresectable stage III or IV melanoma. Clinical Cancer Research. 2009, 15: 5591-5598. 10.1158/1078-0432.CCR-09-1024.CrossRefPubMed Weber J, Thompson JA, Hamid O, Minor D, Amin A, Ron I: A randomized, double-blind, placebo-controlled, phase II study comparing the tolerability and efficacy of ipilimumab administered with or without prophylactic budesonide in patients with unresectable stage III or IV melanoma. Clinical Cancer Research. 2009, 15: 5591-5598. 10.1158/1078-0432.CCR-09-1024.CrossRefPubMed
18.
go back to reference Weber J: Ipilimumab: controversies in its development, utility and autoimmune adverse events. Cancer Immunology, Immunotherapy. 2009, 58: 823-830. 10.1007/s00262-008-0653-8.CrossRefPubMed Weber J: Ipilimumab: controversies in its development, utility and autoimmune adverse events. Cancer Immunology, Immunotherapy. 2009, 58: 823-830. 10.1007/s00262-008-0653-8.CrossRefPubMed
19.
go back to reference Fong L, Small EJ: Anti-cytotoxic T-lymphocyte antigen-4 antibody: the first in an emerging class of immunomodulatory antibodies for cancer treatment. Journal of Clinical Oncology. 2008, 26: 5275-5283. 10.1200/JCO.2008.17.8954.CrossRefPubMed Fong L, Small EJ: Anti-cytotoxic T-lymphocyte antigen-4 antibody: the first in an emerging class of immunomodulatory antibodies for cancer treatment. Journal of Clinical Oncology. 2008, 26: 5275-5283. 10.1200/JCO.2008.17.8954.CrossRefPubMed
20.
go back to reference Phan GQ, Yang JC, Sherry RM, Hwu P, Topalian SL, Schwartzentruber DJ: Cancer regression and autoimmunity induced by cytotoxic T lymphocyte-associated antigen 4 blockade in patients with metastatic melanoma. Proc Natl Acad Sci USA. 2003, 100: 8372-8377. 10.1073/pnas.1533209100.CrossRefPubMedPubMedCentral Phan GQ, Yang JC, Sherry RM, Hwu P, Topalian SL, Schwartzentruber DJ: Cancer regression and autoimmunity induced by cytotoxic T lymphocyte-associated antigen 4 blockade in patients with metastatic melanoma. Proc Natl Acad Sci USA. 2003, 100: 8372-8377. 10.1073/pnas.1533209100.CrossRefPubMedPubMedCentral
21.
go back to reference O'Day SJ, Maio M, Chiarion-Sileni V, Gajewski TF, Pehamberger H, Bondarenko IN: Efficacy and safety of ipilimumab monotherapy in patients with pretreated advanced melanoma: a multicenter single-arm phase II study. Annals of Oncology. 2010, 21 (8): 1712-1717. 10.1093/annonc/mdq013.CrossRefPubMed O'Day SJ, Maio M, Chiarion-Sileni V, Gajewski TF, Pehamberger H, Bondarenko IN: Efficacy and safety of ipilimumab monotherapy in patients with pretreated advanced melanoma: a multicenter single-arm phase II study. Annals of Oncology. 2010, 21 (8): 1712-1717. 10.1093/annonc/mdq013.CrossRefPubMed
22.
go back to reference Hodi FS, O'Day SJ, McDermott DF, Weber RW, Sosman JA, Haanen JB: mproved survival with ipilimumab in patients with metastatic melanoma. The New England Journal of Medicine. 2010, 363: 711-723. 10.1056/NEJMoa1003466.CrossRefPubMedPubMedCentral Hodi FS, O'Day SJ, McDermott DF, Weber RW, Sosman JA, Haanen JB: mproved survival with ipilimumab in patients with metastatic melanoma. The New England Journal of Medicine. 2010, 363: 711-723. 10.1056/NEJMoa1003466.CrossRefPubMedPubMedCentral
23.
go back to reference Robert C, Thomas L, Bondarenko I, O'Day S, DJ M, Garbe C: Ipilimumab plus dacarbazine for previously untreated metastatic melanoma. The New England Journal of Medicine. 2011, 364: 2517-2526. 10.1056/NEJMoa1104621.CrossRefPubMed Robert C, Thomas L, Bondarenko I, O'Day S, DJ M, Garbe C: Ipilimumab plus dacarbazine for previously untreated metastatic melanoma. The New England Journal of Medicine. 2011, 364: 2517-2526. 10.1056/NEJMoa1104621.CrossRefPubMed
24.
go back to reference Yuan J, Page DB, Ku GY, Li Y, Mu Z, Ariyan C: Correlation of clinical and immunological data in a metastatic melanoma patient with heterogeneous tumor responses to ipilimumab therapy. Cancer Immunity. 2010, 10: 1-7.PubMedPubMedCentral Yuan J, Page DB, Ku GY, Li Y, Mu Z, Ariyan C: Correlation of clinical and immunological data in a metastatic melanoma patient with heterogeneous tumor responses to ipilimumab therapy. Cancer Immunity. 2010, 10: 1-7.PubMedPubMedCentral
25.
go back to reference Sanderson K, Scotland R, Lee P, Liu D, Groshen S, Snively J: Autoimmunity in a phase I trial of a fully human anti-cytotoxic T-lymphocyte antigen-4 monoclonal antibody with multiple melanoma peptides and Montanide ISA 51 for patients with resected stages III and IV melanoma. Journal of Clinical Oncology. 2005, 23: 741-750. 10.1200/JCO.2005.01.128.CrossRefPubMed Sanderson K, Scotland R, Lee P, Liu D, Groshen S, Snively J: Autoimmunity in a phase I trial of a fully human anti-cytotoxic T-lymphocyte antigen-4 monoclonal antibody with multiple melanoma peptides and Montanide ISA 51 for patients with resected stages III and IV melanoma. Journal of Clinical Oncology. 2005, 23: 741-750. 10.1200/JCO.2005.01.128.CrossRefPubMed
26.
go back to reference Sarnaik AA, Yu B, Yu D, Morelli DR, Hall MS, Bogle D: Extended dose ipilimumab with a peptide vaccine: immune correlates associated with clinical benefit in patients with resected high-risk stage IIIc/IV melanoma. Clinical Cancer Research. 2011, 17 (4): 896-906. 10.1158/1078-0432.CCR-10-2463.CrossRefPubMedPubMedCentral Sarnaik AA, Yu B, Yu D, Morelli DR, Hall MS, Bogle D: Extended dose ipilimumab with a peptide vaccine: immune correlates associated with clinical benefit in patients with resected high-risk stage IIIc/IV melanoma. Clinical Cancer Research. 2011, 17 (4): 896-906. 10.1158/1078-0432.CCR-10-2463.CrossRefPubMedPubMedCentral
27.
go back to reference Carthon BC, Wolchok JD, Yuan J, Kamat A, Ng Tang DS, Sun J: Preoperative CTLA-4 blockade: tolerability and immune monitoring in the setting of a presurgical clinical trial. Clinical Cancer Research. 16: 2861-2871. Carthon BC, Wolchok JD, Yuan J, Kamat A, Ng Tang DS, Sun J: Preoperative CTLA-4 blockade: tolerability and immune monitoring in the setting of a presurgical clinical trial. Clinical Cancer Research. 16: 2861-2871.
28.
go back to reference Chen H, Liakou CI, Kamat A, Pettaway C, Ward JF, Tang DN: Anti-CTLA-4 therapy results in higher CD4 + ICOShi T cell frequency and IFN-gamma levels in both nonmalignant and malignant prostate tissues. Proc Natl Acad Sci USA. 2009, 106: 2729-2734. 10.1073/pnas.0813175106.CrossRefPubMedPubMedCentral Chen H, Liakou CI, Kamat A, Pettaway C, Ward JF, Tang DN: Anti-CTLA-4 therapy results in higher CD4 + ICOShi T cell frequency and IFN-gamma levels in both nonmalignant and malignant prostate tissues. Proc Natl Acad Sci USA. 2009, 106: 2729-2734. 10.1073/pnas.0813175106.CrossRefPubMedPubMedCentral
29.
go back to reference Attia P, Phan GQ, Maker AV, Robinson MR, Quezado MM, Yang JC: Autoimmunity correlates with tumor regression in patients with metastatic melanoma treated with anti-cytotoxic T-lymphocyte antigen-4. Journal of Clinical Oncology. 2005, 23: 6043-6053. 10.1200/JCO.2005.06.205.CrossRefPubMedPubMedCentral Attia P, Phan GQ, Maker AV, Robinson MR, Quezado MM, Yang JC: Autoimmunity correlates with tumor regression in patients with metastatic melanoma treated with anti-cytotoxic T-lymphocyte antigen-4. Journal of Clinical Oncology. 2005, 23: 6043-6053. 10.1200/JCO.2005.06.205.CrossRefPubMedPubMedCentral
30.
go back to reference Ribas A, Comin-Anduix B, Economou JS, Donahue TR, de la Rocha P, Morris LF: Intratumoral immune cell infiltrates, FoxP3, and indoleamine 2,3-dioxygenase in patients with melanoma undergoing CTLA4 blockade. Clinical Cancer Research. 2009, 15: 390-399. 10.1158/1078-0432.CCR-08-0783.CrossRefPubMed Ribas A, Comin-Anduix B, Economou JS, Donahue TR, de la Rocha P, Morris LF: Intratumoral immune cell infiltrates, FoxP3, and indoleamine 2,3-dioxygenase in patients with melanoma undergoing CTLA4 blockade. Clinical Cancer Research. 2009, 15: 390-399. 10.1158/1078-0432.CCR-08-0783.CrossRefPubMed
31.
go back to reference von Euw E, Chodon T, Attar N, Jalil J, Koya RC, Comin-Anduix B: CTLA4 blockade increases Th17 cells in patients with metastatic melanoma. Journal of Translational Medicine. 2009, 7: 35-10.1186/1479-5876-7-35.CrossRefPubMedPubMedCentral von Euw E, Chodon T, Attar N, Jalil J, Koya RC, Comin-Anduix B: CTLA4 blockade increases Th17 cells in patients with metastatic melanoma. Journal of Translational Medicine. 2009, 7: 35-10.1186/1479-5876-7-35.CrossRefPubMedPubMedCentral
32.
go back to reference Comin-Anduix B, Sazegar H, Chodon T, Matsunaga D, Jalil J, von Euw E: Modulation of cell signaling networks after CTLA4 blockade in patients with metastatic melanoma. PLoS One. 2010, 5: e12711-10.1371/journal.pone.0012711.CrossRefPubMedPubMedCentral Comin-Anduix B, Sazegar H, Chodon T, Matsunaga D, Jalil J, von Euw E: Modulation of cell signaling networks after CTLA4 blockade in patients with metastatic melanoma. PLoS One. 2010, 5: e12711-10.1371/journal.pone.0012711.CrossRefPubMedPubMedCentral
33.
go back to reference Ribas A, Benz MR, Allen-Auerbach MS, Radu C, Chmielowski B, Seja E: Imaging of CTLA4 blockade-induced cell replication with (18)F-FLT PET in patients with advanced melanoma treated with tremelimumab. Journal of Nuclear Medicine. 2010, 51: 340-346. 10.2967/jnumed.109.070946.CrossRefPubMed Ribas A, Benz MR, Allen-Auerbach MS, Radu C, Chmielowski B, Seja E: Imaging of CTLA4 blockade-induced cell replication with (18)F-FLT PET in patients with advanced melanoma treated with tremelimumab. Journal of Nuclear Medicine. 2010, 51: 340-346. 10.2967/jnumed.109.070946.CrossRefPubMed
34.
go back to reference Huang RR, Jalil J, Economou JS, Chmielowski B, Koya RC, Mok S: CTLA4 blockade induces frequent tumor infiltration by activated lymphocytes regardless of clinical responses in humans. Clinical Cancer Research. 2011, 17: 4101-4109. 10.1158/1078-0432.CCR-11-0407.CrossRefPubMedPubMedCentral Huang RR, Jalil J, Economou JS, Chmielowski B, Koya RC, Mok S: CTLA4 blockade induces frequent tumor infiltration by activated lymphocytes regardless of clinical responses in humans. Clinical Cancer Research. 2011, 17: 4101-4109. 10.1158/1078-0432.CCR-11-0407.CrossRefPubMedPubMedCentral
35.
go back to reference Van Gelder RN, von Zastrow ME, Yool A, Dement WC, Barchas JD, Eberwine JH: Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc Natl Acad Sci USA. 1990, 87: 1663-1667. 10.1073/pnas.87.5.1663.CrossRefPubMedPubMedCentral Van Gelder RN, von Zastrow ME, Yool A, Dement WC, Barchas JD, Eberwine JH: Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc Natl Acad Sci USA. 1990, 87: 1663-1667. 10.1073/pnas.87.5.1663.CrossRefPubMedPubMedCentral
36.
go back to reference Liu WM, Mei R, Di X, Ryder TB, Hubbell E, Dee S: Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics. 2002, 18: 1593-1599. 10.1093/bioinformatics/18.12.1593.CrossRefPubMed Liu WM, Mei R, Di X, Ryder TB, Hubbell E, Dee S: Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics. 2002, 18: 1593-1599. 10.1093/bioinformatics/18.12.1593.CrossRefPubMed
37.
go back to reference Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP: Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Research. 2003, 31: e15-10.1093/nar/gng015.CrossRefPubMedPubMedCentral Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP: Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Research. 2003, 31: e15-10.1093/nar/gng015.CrossRefPubMedPubMedCentral
38.
go back to reference Strimmer K: fdrtool: a versatile R package for estimating local and tail area-based false discovery rates. Bioinformatics. 2008, 24: 1461-1462. 10.1093/bioinformatics/btn209.CrossRefPubMed Strimmer K: fdrtool: a versatile R package for estimating local and tail area-based false discovery rates. Bioinformatics. 2008, 24: 1461-1462. 10.1093/bioinformatics/btn209.CrossRefPubMed
39.
go back to reference Scholzen T, Gerdes J: The Ki-67 protein: from the known and the unknown. Journal of Cellular Physiology. 2000, 182: 311-322. 10.1002/(SICI)1097-4652(200003)182:3<311::AID-JCP1>3.0.CO;2-9.CrossRefPubMed Scholzen T, Gerdes J: The Ki-67 protein: from the known and the unknown. Journal of Cellular Physiology. 2000, 182: 311-322. 10.1002/(SICI)1097-4652(200003)182:3<311::AID-JCP1>3.0.CO;2-9.CrossRefPubMed
40.
go back to reference Hertoghs KM, Moerland PD, van Stijn A, Remmerswaal EB, Yong SL, van de Berg PJ: Molecular profiling of cytomegalovirus-induced human CD8+ T cell differentiation. The Journal of Clinical Investigation. 2010, 120: 4077-4090. 10.1172/JCI42758.CrossRefPubMedPubMedCentral Hertoghs KM, Moerland PD, van Stijn A, Remmerswaal EB, Yong SL, van de Berg PJ: Molecular profiling of cytomegalovirus-induced human CD8+ T cell differentiation. The Journal of Clinical Investigation. 2010, 120: 4077-4090. 10.1172/JCI42758.CrossRefPubMedPubMedCentral
41.
go back to reference Dong C, Juedes AE, Temann UA, Shresta S, Allison JP, Ruddle NH: ICOS co-stimulatory receptor is essential for T-cell activation and function. Nature. 2001, 409: 97-101. 10.1038/35051100.CrossRefPubMed Dong C, Juedes AE, Temann UA, Shresta S, Allison JP, Ruddle NH: ICOS co-stimulatory receptor is essential for T-cell activation and function. Nature. 2001, 409: 97-101. 10.1038/35051100.CrossRefPubMed
42.
go back to reference McAdam AJ, Chang TT, Lumelsky AE, Greenfield EA, Boussiotis VA, Duke-Cohan JS: Mouse inducible costimulatory molecule (ICOS) expression is enhanced by CD28 costimulation and regulates differentiation of CD4+ T cells. J Immunol. 2000, 165: 5035-5040.CrossRefPubMed McAdam AJ, Chang TT, Lumelsky AE, Greenfield EA, Boussiotis VA, Duke-Cohan JS: Mouse inducible costimulatory molecule (ICOS) expression is enhanced by CD28 costimulation and regulates differentiation of CD4+ T cells. J Immunol. 2000, 165: 5035-5040.CrossRefPubMed
43.
go back to reference Pearce EL, Mullen AC, Martins GA, Krawczyk CM, Hutchins AS, Zediak VP: Control of effector CD8+ T cell function by the transcription factor Eomesodermin. Science. 2003, 302: 1041-1043. 10.1126/science.1090148.CrossRefPubMed Pearce EL, Mullen AC, Martins GA, Krawczyk CM, Hutchins AS, Zediak VP: Control of effector CD8+ T cell function by the transcription factor Eomesodermin. Science. 2003, 302: 1041-1043. 10.1126/science.1090148.CrossRefPubMed
44.
go back to reference Bauquet AT, Jin H, Paterson AM, Mitsdoerffer M, Ho IC, Sharpe AH: The costimulatory molecule ICOS regulates the expression of c-Maf and IL-21 in the development of follicular T helper cells and TH-17 cells. Nature Immunology. 2009, 10: 167-175. 10.1038/ni.1690.CrossRefPubMedPubMedCentral Bauquet AT, Jin H, Paterson AM, Mitsdoerffer M, Ho IC, Sharpe AH: The costimulatory molecule ICOS regulates the expression of c-Maf and IL-21 in the development of follicular T helper cells and TH-17 cells. Nature Immunology. 2009, 10: 167-175. 10.1038/ni.1690.CrossRefPubMedPubMedCentral
45.
go back to reference Fu T, He Q, Sharma P: The ICOS/ICOSL Pathway Is Required for Optimal Antitumor Responses Mediated by Anti-CTLA-4 Therapy. Cancer Research. 2011, 71: 5445-5454. 10.1158/0008-5472.CAN-11-1138.CrossRefPubMed Fu T, He Q, Sharma P: The ICOS/ICOSL Pathway Is Required for Optimal Antitumor Responses Mediated by Anti-CTLA-4 Therapy. Cancer Research. 2011, 71: 5445-5454. 10.1158/0008-5472.CAN-11-1138.CrossRefPubMed
46.
go back to reference Ribas A, Comin-Anduix B, Chmielowski B, Jalil J, de la Rocha P, McCannel TA: Dendritic cell vaccination combined with CTLA4 blockade in patients with metastatic melanoma. Clinical Cancer Research. 2009, 15: 6267-6276. 10.1158/1078-0432.CCR-09-1254.CrossRefPubMedPubMedCentral Ribas A, Comin-Anduix B, Chmielowski B, Jalil J, de la Rocha P, McCannel TA: Dendritic cell vaccination combined with CTLA4 blockade in patients with metastatic melanoma. Clinical Cancer Research. 2009, 15: 6267-6276. 10.1158/1078-0432.CCR-09-1254.CrossRefPubMedPubMedCentral
47.
go back to reference Critchley-Thorne RJ, Yan N, Nacu S, Weber J, Holmes SP, Lee PP: Down-regulation of the interferon signaling pathway in T lymphocytes from patients with metastatic melanoma. PLoS Med. 2007, 4: e176-10.1371/journal.pmed.0040176.CrossRefPubMedPubMedCentral Critchley-Thorne RJ, Yan N, Nacu S, Weber J, Holmes SP, Lee PP: Down-regulation of the interferon signaling pathway in T lymphocytes from patients with metastatic melanoma. PLoS Med. 2007, 4: e176-10.1371/journal.pmed.0040176.CrossRefPubMedPubMedCentral
48.
Metadata
Title
Biomarkers on melanoma patient T Cells associated with ipilimumab treatment
Authors
Wenshi Wang
Daohai Yu
Amod A Sarnaik
Bin Yu
Maclean Hall
Dawn Morelli
Yonghong Zhang
Xiuhua Zhao
Jeffrey S Weber
Publication date
01-12-2012
Publisher
BioMed Central
Published in
Journal of Translational Medicine / Issue 1/2012
Electronic ISSN: 1479-5876
DOI
https://doi.org/10.1186/1479-5876-10-146

Other articles of this Issue 1/2012

Journal of Translational Medicine 1/2012 Go to the issue