Skip to main content
Top
Published in: Malaria Journal 1/2012

Open Access 01-12-2012 | Research

Development, validation and evaluation of a rapid PCR-nucleic acid lateral flow immuno-assay for the detection of Plasmodium and the differentiation between Plasmodium falciparum and Plasmodium vivax

Authors: Petra F Mens, AntoinePHA Moers, Laura M de Bes, Jonathan Flint, Jathee R s Sak, Lily Keereecharoen, Chantal van Overmeir, Jaco J Verweij, Rachel L Hallett, Benchawan Wihokhoen, Stephane Proux, Henk DFH Schallig, Aart van Amerongen

Published in: Malaria Journal | Issue 1/2012

Login to get access

Abstract

Background

Molecular tools are very sensitive and specific and could be an alternative for the diagnosis of malaria. The complexity and need for expensive equipment may hamper implementation and, therefore, simplifications to current protocols are warranted.

Methods

A PCR detecting the different Plasmodium species and differentiating between Plasmodium falciparum and Plasmodium vivax was developed and combined with a nucleic acid lateral flow immuno-assay (PCR-NALFIA) for amplicon detection. The assay was thoroughly evaluated for the analytical sensitivity and specificity in the laboratory, the robustness and reproducibility in a ring trial and accuracy and predictive value in a field trial.

Results

The analytical sensitivity and specificity were 0.978 (95% CI: 0.932–0.994) and 0.980 (95% CI: 0.924-0.997), respectively, and were slightly less sensitive for the detection of P. vivax than for P. falciparum. The reproducibility tested in three laboratories was very good (k = 0.83). This evaluation showed that the PCR machine used could influence the results. Accuracy was evaluated in Thailand and compared to expert microscopy and rapid diagnostic tests (RDTs). The overall and P. falciparum-specific sensitivity and specificity was good ranging from 0.86-1 and 0.95-0.98 respectively, compared to microscopy. Plasmodium vivax detection was better than the sensitivity of RDT, but slightly less than microscopy performed in this study.

Conclusion

PCR-NALFIA is a sensitive, specific and robust assay able to identify Plasmodium species with good accuracy. Extensive testing including a ring trial can identify possible bottlenecks before implementation and is therefore essential to perform in additon to other evaluations.
Appendix
Available only for authorised users
Literature
1.
go back to reference World Health Organization: Guidelines for the treatment of malaria. 2010, WHO, Geneva, Second World Health Organization: Guidelines for the treatment of malaria. 2010, WHO, Geneva, Second
2.
go back to reference Kyabayinze DJ, Asiimwe C, Nakanjako D, Nabakooza J, Counihan H, Tibenderana JK: Use of RDTs to improve malaria diagnosis and fever case management at primary health care facilities in Uganda. Malar J. 2010, 9: 200-10.1186/1475-2875-9-200.PubMedCentralCrossRefPubMed Kyabayinze DJ, Asiimwe C, Nakanjako D, Nabakooza J, Counihan H, Tibenderana JK: Use of RDTs to improve malaria diagnosis and fever case management at primary health care facilities in Uganda. Malar J. 2010, 9: 200-10.1186/1475-2875-9-200.PubMedCentralCrossRefPubMed
3.
go back to reference Ansah EK, Narh-Bana S, Epokor M, Akanpigbiam S, Quartey AA, Gyapong J, Whitty CJ: Rapid testing for malaria in settings where microscopy is available and peripheral clinics where only presumptive treatment is available: a randomised controlled trial in Ghana. BMJ. 2010, 340: c930-10.1136/bmj.c930.PubMedCentralCrossRefPubMed Ansah EK, Narh-Bana S, Epokor M, Akanpigbiam S, Quartey AA, Gyapong J, Whitty CJ: Rapid testing for malaria in settings where microscopy is available and peripheral clinics where only presumptive treatment is available: a randomised controlled trial in Ghana. BMJ. 2010, 340: c930-10.1136/bmj.c930.PubMedCentralCrossRefPubMed
4.
go back to reference Kahama-Maro J, D'Acremont V, Mtasiwa D, Genton B, Lengeler C: Low quality of routine microscopy for malaria at different levels of the health system in Dar es Salaam. Malar J. 2011, 10: 332-10.1186/1475-2875-10-332.PubMedCentralCrossRefPubMed Kahama-Maro J, D'Acremont V, Mtasiwa D, Genton B, Lengeler C: Low quality of routine microscopy for malaria at different levels of the health system in Dar es Salaam. Malar J. 2011, 10: 332-10.1186/1475-2875-10-332.PubMedCentralCrossRefPubMed
5.
go back to reference Harris I, Sharrock WW, Bain LM, Gray KA, Bobogare A, Boaz L, Lilley K, Krause D, Vallely A, Johnson ML, Gatton ML, Shanks GD, Cheng Q: A large proportion of asymptomatic Plasmodium infections with low and sub-microscopic parasite densities in the low transmission setting of Temotu Province, Solomon Islands: challenges for malaria diagnostics in an elimination setting. Malar J. 2010, 9: 254-10.1186/1475-2875-9-254.PubMedCentralCrossRefPubMed Harris I, Sharrock WW, Bain LM, Gray KA, Bobogare A, Boaz L, Lilley K, Krause D, Vallely A, Johnson ML, Gatton ML, Shanks GD, Cheng Q: A large proportion of asymptomatic Plasmodium infections with low and sub-microscopic parasite densities in the low transmission setting of Temotu Province, Solomon Islands: challenges for malaria diagnostics in an elimination setting. Malar J. 2010, 9: 254-10.1186/1475-2875-9-254.PubMedCentralCrossRefPubMed
6.
go back to reference Meena M, Joshi D, Joshi R, Sridhar S, Waghdhare S, Gangane N, Kalantri SP: Accuracy of a multispecies rapid diagnostic test kit for detection of malarial parasite at the point of care in a low endemicity region. Trans R Soc Trop Med Hyg. 2009, 103: 1237-1244. 10.1016/j.trstmh.2009.04.011.CrossRefPubMed Meena M, Joshi D, Joshi R, Sridhar S, Waghdhare S, Gangane N, Kalantri SP: Accuracy of a multispecies rapid diagnostic test kit for detection of malarial parasite at the point of care in a low endemicity region. Trans R Soc Trop Med Hyg. 2009, 103: 1237-1244. 10.1016/j.trstmh.2009.04.011.CrossRefPubMed
7.
go back to reference Hawkes M, Kain KC: Advances in malaria diagnosis. Expert Rev Anti Infect Ther. 2007, 5: 485-495. 10.1586/14787210.5.3.485.CrossRefPubMed Hawkes M, Kain KC: Advances in malaria diagnosis. Expert Rev Anti Infect Ther. 2007, 5: 485-495. 10.1586/14787210.5.3.485.CrossRefPubMed
8.
go back to reference Lucchi NW, Demas A, Narayanan J, Sumari D, Kabanywanyi A, Kachur SP, Barnwell JW, Udhayakumar V: Real-time fluorescence loop mediated isothermal amplification for the diagnosis of malaria. PLoS One. 2010, 5: e13733-10.1371/journal.pone.0013733.PubMedCentralCrossRefPubMed Lucchi NW, Demas A, Narayanan J, Sumari D, Kabanywanyi A, Kachur SP, Barnwell JW, Udhayakumar V: Real-time fluorescence loop mediated isothermal amplification for the diagnosis of malaria. PLoS One. 2010, 5: e13733-10.1371/journal.pone.0013733.PubMedCentralCrossRefPubMed
9.
go back to reference Posthuma-Trumpie GA, Korf J, van Amerongen A: Lateral flow (immuno)assay: its strengths, weaknesses, opportunities and threats. A literature survey. Anal Bioanal Chem. 2009, 393: 569-582. 10.1007/s00216-008-2287-2.CrossRefPubMed Posthuma-Trumpie GA, Korf J, van Amerongen A: Lateral flow (immuno)assay: its strengths, weaknesses, opportunities and threats. A literature survey. Anal Bioanal Chem. 2009, 393: 569-582. 10.1007/s00216-008-2287-2.CrossRefPubMed
10.
go back to reference Noguera P, Posthuma-Trumpie GA, van Tuil M, van der Wal FJ, de Boer A, Moers AP, van Amerongen A: Carbon nanoparticles in lateral flow methods to detect genes encoding virulence factors of Shiga toxin-producing Escherichia coli. Anal Bioanal Chem. 2011, 399: 831-838. 10.1007/s00216-010-4334-z.PubMedCentralCrossRefPubMed Noguera P, Posthuma-Trumpie GA, van Tuil M, van der Wal FJ, de Boer A, Moers AP, van Amerongen A: Carbon nanoparticles in lateral flow methods to detect genes encoding virulence factors of Shiga toxin-producing Escherichia coli. Anal Bioanal Chem. 2011, 399: 831-838. 10.1007/s00216-010-4334-z.PubMedCentralCrossRefPubMed
11.
go back to reference Bossuyt PM, Irwig L, Craig J, Glasziou P: Comparative accuracy: assessing new tests against existing diagnostic pathways. BMJ. 2006, 332: 1089-1092. 10.1136/bmj.332.7549.1089.PubMedCentralCrossRefPubMed Bossuyt PM, Irwig L, Craig J, Glasziou P: Comparative accuracy: assessing new tests against existing diagnostic pathways. BMJ. 2006, 332: 1089-1092. 10.1136/bmj.332.7549.1089.PubMedCentralCrossRefPubMed
12.
go back to reference Sahaa AJ, Hoover DR: “Sensitivity” and “specificity” reconsidered: the meaning of these terms in analytical and diagnostic settings. Ann Intern Med. 1997, 126: 91-94.CrossRef Sahaa AJ, Hoover DR: “Sensitivity” and “specificity” reconsidered: the meaning of these terms in analytical and diagnostic settings. Ann Intern Med. 1997, 126: 91-94.CrossRef
13.
go back to reference Weinstein NA S, Obuchowski M, Lieber L: Clinical evaluation of diagnostic tests. Am J Roentgenology. 2005, 184: 14-19.CrossRef Weinstein NA S, Obuchowski M, Lieber L: Clinical evaluation of diagnostic tests. Am J Roentgenology. 2005, 184: 14-19.CrossRef
14.
go back to reference Proux S, Suwanarusk R, Barends M, Zwang J, Price RN, Leimanis M, Kiricharoen L, Laochan N, Russell B, Nosten F, Snounou G: Considerations on the use of nucleic acid-based amplification for malaria parasite detection. Malar J. 2011, 10: 323-10.1186/1475-2875-10-323.PubMedCentralCrossRefPubMed Proux S, Suwanarusk R, Barends M, Zwang J, Price RN, Leimanis M, Kiricharoen L, Laochan N, Russell B, Nosten F, Snounou G: Considerations on the use of nucleic acid-based amplification for malaria parasite detection. Malar J. 2011, 10: 323-10.1186/1475-2875-10-323.PubMedCentralCrossRefPubMed
15.
go back to reference World Organization of Animal Health: Principles and methods of validation of diagnostic assays for infectious diseases. Chapter 1.1.4/5. Terrestrial Manual. 2010, Office International des Epizooties, Paris, p1-p18. World Organization of Animal Health: Principles and methods of validation of diagnostic assays for infectious diseases. Chapter 1.1.4/5. Terrestrial Manual. 2010, Office International des Epizooties, Paris, p1-p18.
16.
go back to reference Snounou G, Viriyakosol S, Zhu XP, Jarra W, Pinheiro L, Do Rosario VE, Thaithong S, Brown KN: High sensitivity of detection of human malaria parasites by the use of nested polymerase chain reaction. Mol Biochem Parasitol. 1993, 61: 315-320. 10.1016/0166-6851(93)90077-B.CrossRefPubMed Snounou G, Viriyakosol S, Zhu XP, Jarra W, Pinheiro L, Do Rosario VE, Thaithong S, Brown KN: High sensitivity of detection of human malaria parasites by the use of nested polymerase chain reaction. Mol Biochem Parasitol. 1993, 61: 315-320. 10.1016/0166-6851(93)90077-B.CrossRefPubMed
18.
go back to reference World Health Organization: Basic malaria microscopy, Part I Learner's guide. 2010, World Health Organization, Geneva, 2 World Health Organization: Basic malaria microscopy, Part I Learner's guide. 2010, World Health Organization, Geneva, 2
19.
go back to reference Fleiss JL, Levin B, Paik MC: Statistical Methods for Rates and Proportions. 2003, Wiley press, New York, 3CrossRef Fleiss JL, Levin B, Paik MC: Statistical Methods for Rates and Proportions. 2003, Wiley press, New York, 3CrossRef
20.
go back to reference Altman DG: Practical Statistics for Medical Reseatch. 1991, Chapman & Hall, London, 611- Altman DG: Practical Statistics for Medical Reseatch. 1991, Chapman & Hall, London, 611-
21.
go back to reference Sirichaisinthop J, Buates S, Watanabe R, Han ET, Suktawonjaroenpon W, Krasaesub S, Takeo S, Tsuboi T, Sattabongkot J: Evaluation of loop-mediated isothermal amplification (LAMP) for malaria diagnosis in a field setting. Am J Trop Med Hyg. 2011, 85: 594-596. 10.4269/ajtmh.2011.10-0676.PubMedCentralCrossRefPubMed Sirichaisinthop J, Buates S, Watanabe R, Han ET, Suktawonjaroenpon W, Krasaesub S, Takeo S, Tsuboi T, Sattabongkot J: Evaluation of loop-mediated isothermal amplification (LAMP) for malaria diagnosis in a field setting. Am J Trop Med Hyg. 2011, 85: 594-596. 10.4269/ajtmh.2011.10-0676.PubMedCentralCrossRefPubMed
22.
go back to reference Schneider P, Wolters L, Schoone G, Schallig H, Sillekens P, Hermsen R, Sauerwein R: Real-time nucleic acid sequence-based amplification is more convenient than real-time PCR for quantification of Plasmodium falciparum. J Clin Microbiol. 2005, 43: 402-405. 10.1128/JCM.43.1.402-405.2005.PubMedCentralCrossRefPubMed Schneider P, Wolters L, Schoone G, Schallig H, Sillekens P, Hermsen R, Sauerwein R: Real-time nucleic acid sequence-based amplification is more convenient than real-time PCR for quantification of Plasmodium falciparum. J Clin Microbiol. 2005, 43: 402-405. 10.1128/JCM.43.1.402-405.2005.PubMedCentralCrossRefPubMed
23.
go back to reference malERA consultative group on diagnoses and diagnostics: A research agenda for malaria eradiaction: diagnoses and diagnostics. PLoS Med. 2011, 8: 1000396-CrossRef malERA consultative group on diagnoses and diagnostics: A research agenda for malaria eradiaction: diagnoses and diagnostics. PLoS Med. 2011, 8: 1000396-CrossRef
24.
go back to reference Mens P, Spieker N, Omar S, Heijnen M, Schallig H, Kager PA: Is molecular biology the best alternative for diagnosis of malaria to microscopy? A comparison between microscopy, antigen detection and molecular tests in rural Kenya and urban Tanzania. Trop Med Int Health. 2007, 12: 238-244.PubMed Mens P, Spieker N, Omar S, Heijnen M, Schallig H, Kager PA: Is molecular biology the best alternative for diagnosis of malaria to microscopy? A comparison between microscopy, antigen detection and molecular tests in rural Kenya and urban Tanzania. Trop Med Int Health. 2007, 12: 238-244.PubMed
Metadata
Title
Development, validation and evaluation of a rapid PCR-nucleic acid lateral flow immuno-assay for the detection of Plasmodium and the differentiation between Plasmodium falciparum and Plasmodium vivax
Authors
Petra F Mens
AntoinePHA Moers
Laura M de Bes
Jonathan Flint
Jathee R s Sak
Lily Keereecharoen
Chantal van Overmeir
Jaco J Verweij
Rachel L Hallett
Benchawan Wihokhoen
Stephane Proux
Henk DFH Schallig
Aart van Amerongen
Publication date
01-12-2012
Publisher
BioMed Central
Published in
Malaria Journal / Issue 1/2012
Electronic ISSN: 1475-2875
DOI
https://doi.org/10.1186/1475-2875-11-279

Other articles of this Issue 1/2012

Malaria Journal 1/2012 Go to the issue