Skip to main content
Top
Published in: BMC Medical Genetics 1/2012

Open Access 01-12-2012 | Case report

Atypical case of Wolfram syndrome revealed through targeted exome sequencing in a patient with suspected mitochondrial disease

Authors: Daniel S Lieber, Scott B Vafai, Laura C Horton, Nancy G Slate, Shangtao Liu, Mark L Borowsky, Sarah E Calvo, Jeremy D Schmahmann, Vamsi K Mootha

Published in: BMC Medical Genetics | Issue 1/2012

Login to get access

Abstract

Background

Mitochondrial diseases comprise a diverse set of clinical disorders that affect multiple organ systems with varying severity and age of onset. Due to their clinical and genetic heterogeneity, these diseases are difficult to diagnose. We have developed a targeted exome sequencing approach to improve our ability to properly diagnose mitochondrial diseases and apply it here to an individual patient. Our method targets mitochondrial DNA (mtDNA) and the exons of 1,600 nuclear genes involved in mitochondrial biology or Mendelian disorders with multi-system phenotypes, thereby allowing for simultaneous evaluation of multiple disease loci.

Case Presentation

Targeted exome sequencing was performed on a patient initially suspected to have a mitochondrial disorder. The patient presented with diabetes mellitus, diffuse brain atrophy, autonomic neuropathy, optic nerve atrophy, and a severe amnestic syndrome. Further work-up revealed multiple heteroplasmic mtDNA deletions as well as profound thiamine deficiency without a clear nutritional cause. Targeted exome sequencing revealed a homozygous c.1672C > T (p.R558C) missense mutation in exon 8 of WFS1 that has previously been reported in a patient with Wolfram syndrome.

Conclusion

This case demonstrates how clinical application of next-generation sequencing technology can enhance the diagnosis of patients suspected to have rare genetic disorders. Furthermore, the finding of unexplained thiamine deficiency in a patient with Wolfram syndrome suggests a potential link between WFS1 biology and thiamine metabolism that has implications for the clinical management of Wolfram syndrome patients.
Appendix
Available only for authorised users
Literature
1.
2.
go back to reference Morava E, van den Heuvel L, Hol F, de Vries MC, Hogeveen M, Rodenburg RJ, Smeitink JA: Mitochondrial disease criteria: diagnostic applications in children. Neurology. 2006, 67 (10): 1823-1826. 10.1212/01.wnl.0000244435.27645.54.CrossRefPubMed Morava E, van den Heuvel L, Hol F, de Vries MC, Hogeveen M, Rodenburg RJ, Smeitink JA: Mitochondrial disease criteria: diagnostic applications in children. Neurology. 2006, 67 (10): 1823-1826. 10.1212/01.wnl.0000244435.27645.54.CrossRefPubMed
3.
go back to reference Chinnery PF: Mitochondrial Disorders Overview. Gene Reviews at GeneTests: Medical Genetics Information Resource (database online). 2010, Copyright, University of Washington, Seattle, 1997-2011. Available at http://www.genetests.org. Accessed October 2011 Chinnery PF: Mitochondrial Disorders Overview. Gene Reviews at GeneTests: Medical Genetics Information Resource (database online). 2010, Copyright, University of Washington, Seattle, 1997-2011. Available at http://​www.​genetests.​org. Accessed October 2011
4.
go back to reference Tucker EJ, Compton AG, Thorburn DR: Recent advances in the genetics of mitochondrial encephalopathies. Curr Neurol Neurosci Rep. 10 (4): 277-285. Tucker EJ, Compton AG, Thorburn DR: Recent advances in the genetics of mitochondrial encephalopathies. Curr Neurol Neurosci Rep. 10 (4): 277-285.
5.
go back to reference Bernier FP, Boneh A, Dennett X, Chow CW, Cleary MA, Thorburn DR: Diagnostic criteria for respiratory chain disorders in adults and children. Neurology. 2002, 59 (9): 1406-1411.CrossRefPubMed Bernier FP, Boneh A, Dennett X, Chow CW, Cleary MA, Thorburn DR: Diagnostic criteria for respiratory chain disorders in adults and children. Neurology. 2002, 59 (9): 1406-1411.CrossRefPubMed
6.
go back to reference Gilman S, Wenning GK, Low PA, Brooks DJ, Mathias CJ, Trojanowski JQ, Wood NW, Colosimo C, Durr A, Fowler CJ, et al: Second consensus statement on the diagnosis of multiple system atrophy. Neurology. 2008, 71 (9): 670-676. 10.1212/01.wnl.0000324625.00404.15.CrossRefPubMedPubMedCentral Gilman S, Wenning GK, Low PA, Brooks DJ, Mathias CJ, Trojanowski JQ, Wood NW, Colosimo C, Durr A, Fowler CJ, et al: Second consensus statement on the diagnosis of multiple system atrophy. Neurology. 2008, 71 (9): 670-676. 10.1212/01.wnl.0000324625.00404.15.CrossRefPubMedPubMedCentral
7.
go back to reference Gnirke A, Melnikov A, Maguire J, Rogov P, LeProust EM, Brockman W, Fennell T, Giannoukos G, Fisher S, Russ C, et al: Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat Biotechnol. 2009, 27 (2): 182-189. 10.1038/nbt.1523.CrossRefPubMedPubMedCentral Gnirke A, Melnikov A, Maguire J, Rogov P, LeProust EM, Brockman W, Fennell T, Giannoukos G, Fisher S, Russ C, et al: Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat Biotechnol. 2009, 27 (2): 182-189. 10.1038/nbt.1523.CrossRefPubMedPubMedCentral
8.
go back to reference Froissart R, Guffon N, Vanier MT, Desnick RJ, Maire I: Fabry disease: D313Y is an alpha-galactosidase A sequence variant that causes pseudodeficient activity in plasma. Mol Genet Metab. 2003, 80 (3): 307-314. 10.1016/S1096-7192(03)00136-7.CrossRefPubMed Froissart R, Guffon N, Vanier MT, Desnick RJ, Maire I: Fabry disease: D313Y is an alpha-galactosidase A sequence variant that causes pseudodeficient activity in plasma. Mol Genet Metab. 2003, 80 (3): 307-314. 10.1016/S1096-7192(03)00136-7.CrossRefPubMed
9.
go back to reference Cano A, Rouzier C, Monnot S, Chabrol B, Conrath J, Lecomte P, Delobel B, Boileau P, Valero R, Procaccio V, et al: Identification of novel mutations in WFS1 and genotype-phenotype correlation in Wolfram syndrome. Am J Med Genet A. 2007, 143A (14): 1605-1612. 10.1002/ajmg.a.31809.CrossRefPubMed Cano A, Rouzier C, Monnot S, Chabrol B, Conrath J, Lecomte P, Delobel B, Boileau P, Valero R, Procaccio V, et al: Identification of novel mutations in WFS1 and genotype-phenotype correlation in Wolfram syndrome. Am J Med Genet A. 2007, 143A (14): 1605-1612. 10.1002/ajmg.a.31809.CrossRefPubMed
10.
go back to reference Tranebjaerg L, Barrett T, Rendtorff ND: WFS1-Related Disorders. Gene Reviews at GeneTests: Medical Genetics Information Resource (database online). 2009, Copyright, University of Washington, Seattle, 1997-2011. Available at http://www.genetests.org. Accessed October 2011 Tranebjaerg L, Barrett T, Rendtorff ND: WFS1-Related Disorders. Gene Reviews at GeneTests: Medical Genetics Information Resource (database online). 2009, Copyright, University of Washington, Seattle, 1997-2011. Available at http://​www.​genetests.​org. Accessed October 2011
11.
go back to reference Rigoli L, Lombardo F, Di Bella C: Wolfram syndrome and WFS1 gene. Clin Genet. 2011, 79 (2): 103-117. 10.1111/j.1399-0004.2010.01522.x.CrossRefPubMed Rigoli L, Lombardo F, Di Bella C: Wolfram syndrome and WFS1 gene. Clin Genet. 2011, 79 (2): 103-117. 10.1111/j.1399-0004.2010.01522.x.CrossRefPubMed
12.
go back to reference Chaussenot A, Bannwarth S, Rouzier C, Vialettes B, Mkadem SA, Chabrol B, Cano A, Labauge P, Paquis-Flucklinger V: Neurologic features and genotype-phenotype correlation in Wolfram syndrome. Ann Neurol. 2011, 69 (3): 501-508. 10.1002/ana.22160.CrossRefPubMed Chaussenot A, Bannwarth S, Rouzier C, Vialettes B, Mkadem SA, Chabrol B, Cano A, Labauge P, Paquis-Flucklinger V: Neurologic features and genotype-phenotype correlation in Wolfram syndrome. Ann Neurol. 2011, 69 (3): 501-508. 10.1002/ana.22160.CrossRefPubMed
13.
go back to reference Bu X, Rotter JI: Wolfram syndrome: a mitochondrial-mediated disorder?. Lancet. 1993, 342 (8871): 598-600. 10.1016/0140-6736(93)91416-J.CrossRefPubMed Bu X, Rotter JI: Wolfram syndrome: a mitochondrial-mediated disorder?. Lancet. 1993, 342 (8871): 598-600. 10.1016/0140-6736(93)91416-J.CrossRefPubMed
14.
go back to reference Rotig A, Cormier V, Chatelain P, Francois R, Saudubray JM, Rustin P, Munnich A: Deletion of mitochondrial DNA in a case of early-onset diabetes mellitus, optic atrophy, and deafness (Wolfram syndrome, MIM 222300). J Clin Invest. 1993, 91 (3): 1095-1098. 10.1172/JCI116267.CrossRefPubMedPubMedCentral Rotig A, Cormier V, Chatelain P, Francois R, Saudubray JM, Rustin P, Munnich A: Deletion of mitochondrial DNA in a case of early-onset diabetes mellitus, optic atrophy, and deafness (Wolfram syndrome, MIM 222300). J Clin Invest. 1993, 91 (3): 1095-1098. 10.1172/JCI116267.CrossRefPubMedPubMedCentral
15.
go back to reference Barrientos A, Casademont J, Saiz A, Cardellach F, Volpini V, Solans A, Tolosa E, Urbano-Marquez A, Estivill X, Nunes V: Autosomal recessive Wolfram syndrome associated with an 8.5-kb mtDNA single deletion. Am J Hum Genet. 1996, 58 (5): 963-970.PubMedPubMedCentral Barrientos A, Casademont J, Saiz A, Cardellach F, Volpini V, Solans A, Tolosa E, Urbano-Marquez A, Estivill X, Nunes V: Autosomal recessive Wolfram syndrome associated with an 8.5-kb mtDNA single deletion. Am J Hum Genet. 1996, 58 (5): 963-970.PubMedPubMedCentral
16.
go back to reference Barrientos A, Volpini V, Casademont J, Genis D, Manzanares JM, Ferrer I, Corral J, Cardellach F, Urbano-Marquez A, Estivill X, et al: A nuclear defect in the 4p16 region predisposes to multiple mitochondrial DNA deletions in families with Wolfram syndrome. J Clin Invest. 1996, 97 (7): 1570-1576. 10.1172/JCI118581.CrossRefPubMedPubMedCentral Barrientos A, Volpini V, Casademont J, Genis D, Manzanares JM, Ferrer I, Corral J, Cardellach F, Urbano-Marquez A, Estivill X, et al: A nuclear defect in the 4p16 region predisposes to multiple mitochondrial DNA deletions in families with Wolfram syndrome. J Clin Invest. 1996, 97 (7): 1570-1576. 10.1172/JCI118581.CrossRefPubMedPubMedCentral
17.
go back to reference Strom TM, Hortnagel K, Hofmann S, Gekeler F, Scharfe C, Rabl W, Gerbitz KD, Meitinger T: Diabetes insipidus, diabetes mellitus, optic atrophy and deafness (DIDMOAD) caused by mutations in a novel gene (wolframin) coding for a predicted transmembrane protein. Hum Mol Genet. 1998, 7 (13): 2021-2028. 10.1093/hmg/7.13.2021.CrossRefPubMed Strom TM, Hortnagel K, Hofmann S, Gekeler F, Scharfe C, Rabl W, Gerbitz KD, Meitinger T: Diabetes insipidus, diabetes mellitus, optic atrophy and deafness (DIDMOAD) caused by mutations in a novel gene (wolframin) coding for a predicted transmembrane protein. Hum Mol Genet. 1998, 7 (13): 2021-2028. 10.1093/hmg/7.13.2021.CrossRefPubMed
18.
go back to reference Inoue H, Tanizawa Y, Wasson J, Behn P, Kalidas K, Bernal-Mizrachi E, Mueckler M, Marshall H, Donis-Keller H, Crock P, et al: A gene encoding a transmembrane protein is mutated in patients with diabetes mellitus and optic atrophy (Wolfram syndrome). Nat Genet. 1998, 20 (2): 143-148. 10.1038/2441.CrossRefPubMed Inoue H, Tanizawa Y, Wasson J, Behn P, Kalidas K, Bernal-Mizrachi E, Mueckler M, Marshall H, Donis-Keller H, Crock P, et al: A gene encoding a transmembrane protein is mutated in patients with diabetes mellitus and optic atrophy (Wolfram syndrome). Nat Genet. 1998, 20 (2): 143-148. 10.1038/2441.CrossRefPubMed
19.
go back to reference Fonseca SG, Ishigaki S, Oslowski CM, Lu S, Lipson KL, Ghosh R, Hayashi E, Ishihara H, Oka Y, Permutt MA, et al: Wolfram syndrome 1 gene negatively regulates ER stress signaling in rodent and human cells. J Clin Invest. 2010, 120 (3): 744-755. 10.1172/JCI39678.CrossRefPubMedPubMedCentral Fonseca SG, Ishigaki S, Oslowski CM, Lu S, Lipson KL, Ghosh R, Hayashi E, Ishihara H, Oka Y, Permutt MA, et al: Wolfram syndrome 1 gene negatively regulates ER stress signaling in rodent and human cells. J Clin Invest. 2010, 120 (3): 744-755. 10.1172/JCI39678.CrossRefPubMedPubMedCentral
20.
go back to reference Torres R, Leroy E, Hu X, Katrivanou A, Gourzis P, Papachatzopoulou A, Athanassiadou A, Beratis S, Collier D, Polymeropoulos MH: Mutation screening of the Wolfram syndrome gene in psychiatric patients. Mol Psychiatry. 2001, 6 (1): 39-43. 10.1038/sj.mp.4000787.CrossRefPubMed Torres R, Leroy E, Hu X, Katrivanou A, Gourzis P, Papachatzopoulou A, Athanassiadou A, Beratis S, Collier D, Polymeropoulos MH: Mutation screening of the Wolfram syndrome gene in psychiatric patients. Mol Psychiatry. 2001, 6 (1): 39-43. 10.1038/sj.mp.4000787.CrossRefPubMed
21.
go back to reference Colosimo A, Guida V, Rigoli L, Di Bella C, De Luca A, Briuglia S, Stuppia L, Salpietro DC, Dallapiccola B: Molecular detection of novel WFS1 mutations in patients with Wolfram syndrome by a DHPLC-based assay. Hum Mutat. 2003, 21 (6): 622-629. 10.1002/humu.10215.CrossRefPubMed Colosimo A, Guida V, Rigoli L, Di Bella C, De Luca A, Briuglia S, Stuppia L, Salpietro DC, Dallapiccola B: Molecular detection of novel WFS1 mutations in patients with Wolfram syndrome by a DHPLC-based assay. Hum Mutat. 2003, 21 (6): 622-629. 10.1002/humu.10215.CrossRefPubMed
22.
go back to reference Smith CJ, Crock PA, King BR, Meldrum CJ, Scott RJ: Phenotype-genotype correlations in a series of wolfram syndrome families. Diabetes Care. 2004, 27 (8): 2003-2009. 10.2337/diacare.27.8.2003.CrossRefPubMed Smith CJ, Crock PA, King BR, Meldrum CJ, Scott RJ: Phenotype-genotype correlations in a series of wolfram syndrome families. Diabetes Care. 2004, 27 (8): 2003-2009. 10.2337/diacare.27.8.2003.CrossRefPubMed
23.
go back to reference Consortium TGP: A map of human genome variation from population-scale sequencing. Nature. 2010, 467 (7319): 1061-1073. 10.1038/nature09534.CrossRef Consortium TGP: A map of human genome variation from population-scale sequencing. Nature. 2010, 467 (7319): 1061-1073. 10.1038/nature09534.CrossRef
25.
go back to reference Rendtorff ND, Lodahl M, Boulahbel H, Johansen IR, Pandya A, Welch KO, Norris VW, Arnos KS, Bitner-Glindzicz M, Emery SB, et al: Identification of p.A684V missense mutation in the WFS1 gene as a frequent cause of autosomal dominant optic atrophy and hearing impairment. Am J Med Genet A. 2011, 155A (6): 1298-1313.CrossRefPubMed Rendtorff ND, Lodahl M, Boulahbel H, Johansen IR, Pandya A, Welch KO, Norris VW, Arnos KS, Bitner-Glindzicz M, Emery SB, et al: Identification of p.A684V missense mutation in the WFS1 gene as a frequent cause of autosomal dominant optic atrophy and hearing impairment. Am J Med Genet A. 2011, 155A (6): 1298-1313.CrossRefPubMed
26.
go back to reference Eiberg H, Hansen L, Kjer B, Hansen T, Pedersen O, Bille M, Rosenberg T, Tranebjaerg L: Autosomal dominant optic atrophy associated with hearing impairment and impaired glucose regulation caused by a missense mutation in the WFS1 gene. J Med Genet. 2006, 43 (5): 435-440.CrossRefPubMedPubMedCentral Eiberg H, Hansen L, Kjer B, Hansen T, Pedersen O, Bille M, Rosenberg T, Tranebjaerg L: Autosomal dominant optic atrophy associated with hearing impairment and impaired glucose regulation caused by a missense mutation in the WFS1 gene. J Med Genet. 2006, 43 (5): 435-440.CrossRefPubMedPubMedCentral
27.
go back to reference Borgna-Pignatti C, Marradi P, Pinelli L, Monetti N, Patrini C: Thiamine-responsive anemia in DIDMOAD syndrome. J Pediatr. 1989, 114 (3): 405-410. 10.1016/S0022-3476(89)80558-X.CrossRefPubMed Borgna-Pignatti C, Marradi P, Pinelli L, Monetti N, Patrini C: Thiamine-responsive anemia in DIDMOAD syndrome. J Pediatr. 1989, 114 (3): 405-410. 10.1016/S0022-3476(89)80558-X.CrossRefPubMed
28.
go back to reference Lagarde WH, Underwood LE, Moats-Staats BM, Calikoglu AS: Novel mutation in the SLC19A2 gene in an African-American female with thiamine-responsive megaloblastic anemia syndrome. Am J Med Genet A. 2004, 125A (3): 299-305. 10.1002/ajmg.a.20506.CrossRefPubMed Lagarde WH, Underwood LE, Moats-Staats BM, Calikoglu AS: Novel mutation in the SLC19A2 gene in an African-American female with thiamine-responsive megaloblastic anemia syndrome. Am J Med Genet A. 2004, 125A (3): 299-305. 10.1002/ajmg.a.20506.CrossRefPubMed
29.
go back to reference Rindi G, Casirola D, Poggi V, De Vizia B, Patrini C, Laforenza U: Thiamine transport by erythrocytes and ghosts in thiamine-responsive megaloblastic anaemia. J Inherit Metab Dis. 1992, 15 (2): 231-242. 10.1007/BF01799637.CrossRefPubMed Rindi G, Casirola D, Poggi V, De Vizia B, Patrini C, Laforenza U: Thiamine transport by erythrocytes and ghosts in thiamine-responsive megaloblastic anaemia. J Inherit Metab Dis. 1992, 15 (2): 231-242. 10.1007/BF01799637.CrossRefPubMed
Metadata
Title
Atypical case of Wolfram syndrome revealed through targeted exome sequencing in a patient with suspected mitochondrial disease
Authors
Daniel S Lieber
Scott B Vafai
Laura C Horton
Nancy G Slate
Shangtao Liu
Mark L Borowsky
Sarah E Calvo
Jeremy D Schmahmann
Vamsi K Mootha
Publication date
01-12-2012
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2012
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/1471-2350-13-3

Other articles of this Issue 1/2012

BMC Medical Genetics 1/2012 Go to the issue