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BMC Medical Imaging
Published in: BMC Medical Imaging 1/2010

Open Access 01-12-2010 | Software

Design and validation of Segment - freely available software for cardiovascular image analysis

Authors: Einar Heiberg, Jane Sjögren, Martin Ugander, Marcus Carlsson, Henrik Engblom, Håkan Arheden

Published in: BMC Medical Imaging | Issue 1/2010

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Abstract

Background

Commercially available software for cardiovascular image analysis often has limited functionality and frequently lacks the careful validation that is required for clinical studies. We have already implemented a cardiovascular image analysis software package and released it as freeware for the research community. However, it was distributed as a stand-alone application and other researchers could not extend it by writing their own custom image analysis algorithms. We believe that the work required to make a clinically applicable prototype can be reduced by making the software extensible, so that researchers can develop their own modules or improvements. Such an initiative might then serve as a bridge between image analysis research and cardiovascular research. The aim of this article is therefore to present the design and validation of a cardiovascular image analysis software package (Segment) and to announce its release in a source code format.

Results

Segment can be used for image analysis in magnetic resonance imaging (MRI), computed tomography (CT), single photon emission computed tomography (SPECT) and positron emission tomography (PET). Some of its main features include loading of DICOM images from all major scanner vendors, simultaneous display of multiple image stacks and plane intersections, automated segmentation of the left ventricle, quantification of MRI flow, tools for manual and general object segmentation, quantitative regional wall motion analysis, myocardial viability analysis and image fusion tools. Here we present an overview of the validation results and validation procedures for the functionality of the software. We describe a technique to ensure continued accuracy and validity of the software by implementing and using a test script that tests the functionality of the software and validates the output. The software has been made freely available for research purposes in a source code format on the project home page http://​segment.​heiberg.​se.

Conclusions

Segment is a well-validated comprehensive software package for cardiovascular image analysis. It is freely available for research purposes provided that relevant original research publications related to the software are cited.
Appendix
Available only for authorised users
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Metadata
Title
Design and validation of Segment - freely available software for cardiovascular image analysis
Authors
Einar Heiberg
Jane Sjögren
Martin Ugander
Marcus Carlsson
Henrik Engblom
Håkan Arheden
Publication date
01-12-2010
Publisher
BioMed Central
Published in
BMC Medical Imaging / Issue 1/2010
Electronic ISSN: 1471-2342
DOI
https://doi.org/10.1186/1471-2342-10-1

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