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Published in: BMC Infectious Diseases 1/2014

Open Access 01-12-2014 | Research article

Characterisation of acute respiratory infections at a United Kingdom paediatric teaching hospital: observational study assessing the impact of influenza A (2009 pdmH1N1) on predominant viral pathogens

Authors: Emily A Lees, Enitan D Carrol, Christine Gerrard, Fiona Hardiman, Gareth Howel, Alison Timmis, Kent Thorburn, Malcolm Guiver, Paul S McNamara

Published in: BMC Infectious Diseases | Issue 1/2014

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Abstract

Background

According to the World Health Organisation, influenza A (2009 pdmH1N1) has moved into the post-pandemic phase, but there were still high numbers of infections occurring in the United Kingdom in 2010-11. It is therefore important to examine the burden of acute respiratory infections at a large children’s hospital to determine pathogen prevalence, occurrence of co-infection, prevalence of co-morbidities and diagnostic yield of sampling methods.

Methods

This was a retrospective study of respiratory virus aetiology in acute admissions to a paediatric teaching hospital in the North West of England between 1st April 2010 and 31st March 2011. Respiratory samples were analysed either with a rapid RSV test if the patient had symptoms suggestive of bronchiolitis, followed by multiplex PCR testing for ten respiratory viruses, or with multiplex PCR testing alone if the patient had suspected other ARI. Patient demographics and data regarding severity of illness, presence of co-morbidities and respiratory virus sampling method were retrieved from case notes.

Results

645 patients were admitted during the study period. 82/645 (12.7%) patients were positive for 2009 pdmH1N1, of whom 24 (29.2%) required PICU admission, with 7.3% mortality rate. Viral co-infection occurred in 48/645 (7.4%) patients and was not associated with more severe disease. Co-morbidities were present more frequently in older children, but there was no significant difference in prevalence of co-morbidity between 2009 pdmH1N1 patients and those with other ARI. NPA samples had the highest diagnostic yield with 192/210 (91.4%) samples yielding an organism.

Conclusions

Influenza A (2009 pdmH1N1) is an ongoing cause of occasionally severe disease affecting both healthy children and those with co-morbidities. Surveillance of viral pathogens provides valuable information on patterns of disease.
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Literature
2.
go back to reference Pebody RG, McLean E, Zhao H, Cleary P, Bracebridge S, Foster K, Charlett A, Hardelid P, Waight P, Ellis J, Bermingham A, Zambon M, Evans B, Salmon R, McMenamin J, Smyth B, Catchpole M, Watson JM: Pandemic Influenza A (H1N1) 2009 and mortality in the United Kingdom: risk factors for death, April 2009 to March 2010. Euro Surveill. 2010, 15 (20): Pebody RG, McLean E, Zhao H, Cleary P, Bracebridge S, Foster K, Charlett A, Hardelid P, Waight P, Ellis J, Bermingham A, Zambon M, Evans B, Salmon R, McMenamin J, Smyth B, Catchpole M, Watson JM: Pandemic Influenza A (H1N1) 2009 and mortality in the United Kingdom: risk factors for death, April 2009 to March 2010. Euro Surveill. 2010, 15 (20):
8.
go back to reference Lessler J, Reich NG, Brookmeyer R, Perl TM, Nelson KE, Cummings DA: Incubation periods of acute respiratory viral infections: a systematic review. Lancet Infect Dis. 2009, 5: 291-300.CrossRef Lessler J, Reich NG, Brookmeyer R, Perl TM, Nelson KE, Cummings DA: Incubation periods of acute respiratory viral infections: a systematic review. Lancet Infect Dis. 2009, 5: 291-300.CrossRef
9.
go back to reference Degail MA, Hughes GJ, Maule C, Holmes C, Lilley M, Pebody R, Bonnet J, Bermingham A, Bracebridge S: A human metapneumovirus outbreak at a community hospital in England, July to September 2010. Euro Surveill. 2012, 17 (15): Degail MA, Hughes GJ, Maule C, Holmes C, Lilley M, Pebody R, Bonnet J, Bermingham A, Bracebridge S: A human metapneumovirus outbreak at a community hospital in England, July to September 2010. Euro Surveill. 2012, 17 (15):
11.
go back to reference Maertzdorf J, Wang CK, Brown JB, Quinto JD, Chu M, De Graaf M, van den Hoogen BG, Spaete R, Osterhaus AD, Fouchier RA: Real-time reverse transcriptase PCR assay for detection of human metapneumoviruses from all known genetic lineages. J Clin Microbiol. 2004, 42 (3): 981-986. 10.1128/JCM.42.3.981-986.2004.CrossRefPubMedPubMedCentral Maertzdorf J, Wang CK, Brown JB, Quinto JD, Chu M, De Graaf M, van den Hoogen BG, Spaete R, Osterhaus AD, Fouchier RA: Real-time reverse transcriptase PCR assay for detection of human metapneumoviruses from all known genetic lineages. J Clin Microbiol. 2004, 42 (3): 981-986. 10.1128/JCM.42.3.981-986.2004.CrossRefPubMedPubMedCentral
12.
go back to reference Scheltinga SA, Templeton KE, Beersma MF, Claas EC: Diagnosis of human metapneumovirus and rhinovirus in patients with respiratory tract infections by an internally controlled multiplex real-time RNA PCR. J Clin Virol. 2005, 33 (4): 306-311. 10.1016/j.jcv.2004.08.021.CrossRefPubMed Scheltinga SA, Templeton KE, Beersma MF, Claas EC: Diagnosis of human metapneumovirus and rhinovirus in patients with respiratory tract infections by an internally controlled multiplex real-time RNA PCR. J Clin Virol. 2005, 33 (4): 306-311. 10.1016/j.jcv.2004.08.021.CrossRefPubMed
13.
go back to reference Hackett S, Hill L, Patel J, Ratnaraja N, Ifeyinwa A, Farooqi M, Nusgen U, Debenham P, Gandhi D, Makwana M, Smit E, Welch S: Clinical characteristics of paediatric H1N1 admissions in Birmingham, UK. Lancet. 2009, 374 (9690): 605-CrossRefPubMed Hackett S, Hill L, Patel J, Ratnaraja N, Ifeyinwa A, Farooqi M, Nusgen U, Debenham P, Gandhi D, Makwana M, Smit E, Welch S: Clinical characteristics of paediatric H1N1 admissions in Birmingham, UK. Lancet. 2009, 374 (9690): 605-CrossRefPubMed
14.
go back to reference Jouvet P, Hutchison J, Pinto R, Menon K, Rodin R, Choong K, Kesselman M, Veroukis S, Andre Dugas M, Santschi M, Guerguerian AM, Withington D, Alsaati B, Joffe AR, Drews T, Skippen P, Rolland E, Kumar A, Fowler R, Canadian Critical Care Trials Group H1N1 Collaborative: Critical illness in children with influenza A/pH1N1 2009 infection in Canada. Pediatr Crit Care Med. 2010, 11 (5): 603-609. 10.1097/PCC.0b013e3181d9c80b.CrossRefPubMed Jouvet P, Hutchison J, Pinto R, Menon K, Rodin R, Choong K, Kesselman M, Veroukis S, Andre Dugas M, Santschi M, Guerguerian AM, Withington D, Alsaati B, Joffe AR, Drews T, Skippen P, Rolland E, Kumar A, Fowler R, Canadian Critical Care Trials Group H1N1 Collaborative: Critical illness in children with influenza A/pH1N1 2009 infection in Canada. Pediatr Crit Care Med. 2010, 11 (5): 603-609. 10.1097/PCC.0b013e3181d9c80b.CrossRefPubMed
15.
go back to reference Calitri C, Gabiano C, Garazzino S, Pinon M, Zoppo M, Cuozzo M, Scolfaro C, Tovo PA: Clinical features of hospitalised children with 2009 H1N1 influenza virus infection. Eur J Pediatr. 2010, 169 (12): 1511-1515. 10.1007/s00431-010-1255-y.CrossRefPubMed Calitri C, Gabiano C, Garazzino S, Pinon M, Zoppo M, Cuozzo M, Scolfaro C, Tovo PA: Clinical features of hospitalised children with 2009 H1N1 influenza virus infection. Eur J Pediatr. 2010, 169 (12): 1511-1515. 10.1007/s00431-010-1255-y.CrossRefPubMed
16.
go back to reference Lister P, Reynolds F, Parslow R, Chan A, Cooper M, Plunkett A, Riphagen S, Peters M: Swine-origin influenza virus H1N1, seasonal influenza virus, and critical illness in children. Lancet. 2009, 374 (9690): 605-607.CrossRefPubMed Lister P, Reynolds F, Parslow R, Chan A, Cooper M, Plunkett A, Riphagen S, Peters M: Swine-origin influenza virus H1N1, seasonal influenza virus, and critical illness in children. Lancet. 2009, 374 (9690): 605-607.CrossRefPubMed
17.
go back to reference Sachedina N, Donaldson LJ: Paediatric mortality related to pandemic influenza A H1N1 infection in England: an observational population-based study. Lancet. 2010, 376 (9755): 1846-1852. 10.1016/S0140-6736(10)61195-6.CrossRefPubMed Sachedina N, Donaldson LJ: Paediatric mortality related to pandemic influenza A H1N1 infection in England: an observational population-based study. Lancet. 2010, 376 (9755): 1846-1852. 10.1016/S0140-6736(10)61195-6.CrossRefPubMed
18.
go back to reference Ercole A, Menon DK, O’Donnell DR: Modelling the impact of pandemic influenza A(H1N1) on UK paediatric intensive care demand. Arch Dis Child. 2009, 94 (12): 962-964. 10.1136/adc.2009.171520.CrossRefPubMed Ercole A, Menon DK, O’Donnell DR: Modelling the impact of pandemic influenza A(H1N1) on UK paediatric intensive care demand. Arch Dis Child. 2009, 94 (12): 962-964. 10.1136/adc.2009.171520.CrossRefPubMed
19.
go back to reference Libster R, Bugna J, Coviello S, Hijano DR, Dunaiewsky M, Reynoso N, Cavalieri M, Guglielmo M, Areso S, Gilligan T, Santucho F, Cabral G, Gregorio GL, Moreno R, Lutz MI, Panigasi AL, Saligari L, Caballero MT, Egües Almeida RM, Gutierrez Meyer ME, Neder MD, Davenport MC, Del Valle MP, Santidrian VS, Mosca G, Garcia Domínguez M, Alvarez L, Landa P, Pota A, Boloñati N, et al: Pediatric hospitalizations associated with 2009 pandemic influenza A (H1N1) in Argentina. N Engl J Med. 2010, 362 (1): 45-55. 10.1056/NEJMoa0907673.CrossRefPubMed Libster R, Bugna J, Coviello S, Hijano DR, Dunaiewsky M, Reynoso N, Cavalieri M, Guglielmo M, Areso S, Gilligan T, Santucho F, Cabral G, Gregorio GL, Moreno R, Lutz MI, Panigasi AL, Saligari L, Caballero MT, Egües Almeida RM, Gutierrez Meyer ME, Neder MD, Davenport MC, Del Valle MP, Santidrian VS, Mosca G, Garcia Domínguez M, Alvarez L, Landa P, Pota A, Boloñati N, et al: Pediatric hospitalizations associated with 2009 pandemic influenza A (H1N1) in Argentina. N Engl J Med. 2010, 362 (1): 45-55. 10.1056/NEJMoa0907673.CrossRefPubMed
20.
go back to reference McNamara PS, Van Doorn R: Chapter 23 - Respiratory Viruses. Manson’s Tropical Diseases. Edited by: Cook G. 2012, London: Elsevier, 23 McNamara PS, Van Doorn R: Chapter 23 - Respiratory Viruses. Manson’s Tropical Diseases. Edited by: Cook G. 2012, London: Elsevier, 23
21.
go back to reference Bezerra PG, Britto MC, Correia JB, Duarte Mdo C, Fonceca AM, Rose K, Hopkins MJ, Cuevas LE, McNamara PS: Viral and atypical bacterial detection in acute respiratory infection in children under five years. PLoS One. 2011, 6 (4): e18928-10.1371/journal.pone.0018928.CrossRefPubMedPubMedCentral Bezerra PG, Britto MC, Correia JB, Duarte Mdo C, Fonceca AM, Rose K, Hopkins MJ, Cuevas LE, McNamara PS: Viral and atypical bacterial detection in acute respiratory infection in children under five years. PLoS One. 2011, 6 (4): e18928-10.1371/journal.pone.0018928.CrossRefPubMedPubMedCentral
22.
go back to reference Tregoning JS, Schwarze J: Respiratory viral infections in infants: causes, clinical symptoms, virology, and immunology. Clin Microbiol Rev. 2010, 23 (1): 74-98. 10.1128/CMR.00032-09.CrossRefPubMedPubMedCentral Tregoning JS, Schwarze J: Respiratory viral infections in infants: causes, clinical symptoms, virology, and immunology. Clin Microbiol Rev. 2010, 23 (1): 74-98. 10.1128/CMR.00032-09.CrossRefPubMedPubMedCentral
23.
go back to reference Calvo C, Pozo F, Garcia-Garcia ML, Sanchez M, Lopez-Valero M, Perez-Brena P, Casas I: Detection of new respiratory viruses in hospitalized infants with bronchiolitis: a three-year prospective study. Acta Paediatr. 2010, 99 (6): 883-887. 10.1111/j.1651-2227.2010.01714.x.CrossRefPubMed Calvo C, Pozo F, Garcia-Garcia ML, Sanchez M, Lopez-Valero M, Perez-Brena P, Casas I: Detection of new respiratory viruses in hospitalized infants with bronchiolitis: a three-year prospective study. Acta Paediatr. 2010, 99 (6): 883-887. 10.1111/j.1651-2227.2010.01714.x.CrossRefPubMed
24.
go back to reference Chan KH, Peiris JS, Lim W, Nicholls JM, Chiu SS: Comparison of nasopharyngeal flocked swabs and aspirates for rapid diagnosis of respiratory viruses in children. J Clin Virol. 2008, 42 (1): 65-69. 10.1016/j.jcv.2007.12.003.CrossRefPubMed Chan KH, Peiris JS, Lim W, Nicholls JM, Chiu SS: Comparison of nasopharyngeal flocked swabs and aspirates for rapid diagnosis of respiratory viruses in children. J Clin Virol. 2008, 42 (1): 65-69. 10.1016/j.jcv.2007.12.003.CrossRefPubMed
25.
go back to reference de la Tabla VO, Masia M, Antequera P, Martin C, Gazquez G, Bunuel F, Gutierrez F: Comparison of combined nose-throat swabs with nasopharyngeal aspirates for detection of pandemic influenza A/H1N1 2009 virus by real-time reverse transcriptase PCR. J Clin Microbiol. 2010, 48 (10): 3492-3495. 10.1128/JCM.01105-10.CrossRefPubMed de la Tabla VO, Masia M, Antequera P, Martin C, Gazquez G, Bunuel F, Gutierrez F: Comparison of combined nose-throat swabs with nasopharyngeal aspirates for detection of pandemic influenza A/H1N1 2009 virus by real-time reverse transcriptase PCR. J Clin Microbiol. 2010, 48 (10): 3492-3495. 10.1128/JCM.01105-10.CrossRefPubMed
Metadata
Title
Characterisation of acute respiratory infections at a United Kingdom paediatric teaching hospital: observational study assessing the impact of influenza A (2009 pdmH1N1) on predominant viral pathogens
Authors
Emily A Lees
Enitan D Carrol
Christine Gerrard
Fiona Hardiman
Gareth Howel
Alison Timmis
Kent Thorburn
Malcolm Guiver
Paul S McNamara
Publication date
01-12-2014
Publisher
BioMed Central
Published in
BMC Infectious Diseases / Issue 1/2014
Electronic ISSN: 1471-2334
DOI
https://doi.org/10.1186/1471-2334-14-343

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