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Published in: BMC Infectious Diseases 1/2003

Open Access 01-12-2003 | Research article

Bioelectronic DNA detection of human papillomaviruses using eSensor™: a model system for detection of multiple pathogens

Authors: Suzanne D Vernon, Daniel H Farkas, Elizabeth R Unger, Vivian Chan, Donna L Miller, Yin-Peng Chen, Gary F Blackburn, William C Reeves

Published in: BMC Infectious Diseases | Issue 1/2003

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Abstract

Background

We used human papillomaviruses (HPV) as a model system to evaluate the utility of a nucleic acid, hybridization-based bioelectronic DNA detection platform (eSensor™) in identifying multiple pathogens.

Methods

Two chips were spotted with capture probes consisting of DNA oligonucleotide sequences specific for HPV types. Electrically conductive signal probes were synthesized to be complementary to a distinct region of the amplified HPV target DNA. A portion of the HPV L1 region that was amplified by using consensus primers served as target DNA. The amplified target was mixed with a cocktail of signal probes and added to a cartridge containing a DNA chip to allow for hybridization with complementary capture probes.

Results

Two bioelectric chips were designed and successfully detected 86% of the HPV types contained in clinical samples.

Conclusions

This model system demonstrates the potential of the eSensor platform for rapid and integrated detection of multiple pathogens.
Appendix
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Literature
1.
go back to reference Farkas DH: Bioelectronic DNA chips for the clinical laboratory. Clin Chem. 2001, 47: 1871-1872.PubMed Farkas DH: Bioelectronic DNA chips for the clinical laboratory. Clin Chem. 2001, 47: 1871-1872.PubMed
2.
go back to reference Umek RM, Lin SS, Chen Yp Y, Irvine B, Paulluconi G, Chan V, Chong Y, Cheung L, Vielmetter J, Farkas DH: Bioelectronic detection of point mutations using discrimination of the H63D polymorphism of the Hfe gene as a model. Mol Diagn. 2000, 5: 321-328. 10.1054/modi.2000.19564.CrossRefPubMed Umek RM, Lin SS, Chen Yp Y, Irvine B, Paulluconi G, Chan V, Chong Y, Cheung L, Vielmetter J, Farkas DH: Bioelectronic detection of point mutations using discrimination of the H63D polymorphism of the Hfe gene as a model. Mol Diagn. 2000, 5: 321-328. 10.1054/modi.2000.19564.CrossRefPubMed
3.
go back to reference Umek RM, Lin SW, Vielmetter J, Terbrueggen RH, Irvine B, Yu CJ, Kayyem JF, Yowanto H, Blackburn GF, Farkas DH, Chen YP: Electronic detection of nucleic acids: versatile platform for molecular diagnostics. J Mol Diagn. 2001, 3: 74-84.CrossRefPubMedPubMedCentral Umek RM, Lin SW, Vielmetter J, Terbrueggen RH, Irvine B, Yu CJ, Kayyem JF, Yowanto H, Blackburn GF, Farkas DH, Chen YP: Electronic detection of nucleic acids: versatile platform for molecular diagnostics. J Mol Diagn. 2001, 3: 74-84.CrossRefPubMedPubMedCentral
4.
go back to reference Yu CJ, Wan Y, Yowanto H, Li J, Tao C, James MD, Tan CL, Blackburn GF, Meade TJ: Electronic detection of single-base mismatches in DNA with ferrocene-modified probes. J Am Chem Soc. 2001, 123: 11155-11161. 10.1021/ja010045f.CrossRefPubMed Yu CJ, Wan Y, Yowanto H, Li J, Tao C, James MD, Tan CL, Blackburn GF, Meade TJ: Electronic detection of single-base mismatches in DNA with ferrocene-modified probes. J Am Chem Soc. 2001, 123: 11155-11161. 10.1021/ja010045f.CrossRefPubMed
5.
go back to reference Relman DA, Schmidt TM, MacDermott RP, Falkow S: Identification of the uncultured bacillus of Whipple's disease. N Engl J Med. 1992, 327: 293-301.CrossRefPubMed Relman DA, Schmidt TM, MacDermott RP, Falkow S: Identification of the uncultured bacillus of Whipple's disease. N Engl J Med. 1992, 327: 293-301.CrossRefPubMed
6.
go back to reference Shukla SK, Vevea DN, Frank DN, Pace NR, Reed KD: Isolation and characterization of a black-pigmented Corynebacterium sp. from a woman with spontaneous abortion. J Clin Microbiol. 2001, 39: 1109-1113. 10.1128/JCM.39.3.1109-1113.2001.CrossRefPubMedPubMedCentral Shukla SK, Vevea DN, Frank DN, Pace NR, Reed KD: Isolation and characterization of a black-pigmented Corynebacterium sp. from a woman with spontaneous abortion. J Clin Microbiol. 2001, 39: 1109-1113. 10.1128/JCM.39.3.1109-1113.2001.CrossRefPubMedPubMedCentral
7.
go back to reference Resnick RM, Cornelissen MT, Wright DK, Eichinger GH, Fox HS, ter Schegget J, Manos MM: Detection and typing of human papillomavirus in archival cervical cancer specimens by DNA amplification with consensus primers. J Natl Cancer Inst. 1990, 82: 1477-1484. 10.1093/jnci/82.18.1477.CrossRefPubMed Resnick RM, Cornelissen MT, Wright DK, Eichinger GH, Fox HS, ter Schegget J, Manos MM: Detection and typing of human papillomavirus in archival cervical cancer specimens by DNA amplification with consensus primers. J Natl Cancer Inst. 1990, 82: 1477-1484. 10.1093/jnci/82.18.1477.CrossRefPubMed
8.
go back to reference Nichol ST, Spiropoulou CF, Morzunov S, Rollin PE, Ksiazek TG, Feldmann H, Sanchez A, Childs J, Zaki S, Peters CJ: Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness. Science. 1993, 262: 914-917.CrossRefPubMed Nichol ST, Spiropoulou CF, Morzunov S, Rollin PE, Ksiazek TG, Feldmann H, Sanchez A, Childs J, Zaki S, Peters CJ: Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness. Science. 1993, 262: 914-917.CrossRefPubMed
9.
go back to reference Gravitt PE, Peyton CL, Alessi TQ, Wheeler CM, Coutlee F, Hildesheim A, Schiffman MH, Scott DR, Apple RJ: Improved amplification of genital human papillomaviruses. J Clin Microbiol. 2000, 38: 357-361.PubMedPubMedCentral Gravitt PE, Peyton CL, Alessi TQ, Wheeler CM, Coutlee F, Hildesheim A, Schiffman MH, Scott DR, Apple RJ: Improved amplification of genital human papillomaviruses. J Clin Microbiol. 2000, 38: 357-361.PubMedPubMedCentral
10.
go back to reference Palegrosdemange C, Simon ES, Prime KL, Whitesides GM: Formation of self-assembled monolayers by chemisorption of derivatives of oligo(ethylene glycol) of structure HS(CH2)11(OCH2CH2)Meta-OH on gold. J Am Chem Soc. 1991, 113: 12-20.CrossRef Palegrosdemange C, Simon ES, Prime KL, Whitesides GM: Formation of self-assembled monolayers by chemisorption of derivatives of oligo(ethylene glycol) of structure HS(CH2)11(OCH2CH2)Meta-OH on gold. J Am Chem Soc. 1991, 113: 12-20.CrossRef
11.
go back to reference Yu CJ, Wan Y, Yowanto H, Li J, Tao C, James MD, Tan CL, Blackburn GF: Uridine-conjugated ferrocene DNA oligonucleotides: unexpected cyclization reaction of the uridine base. J Am Chem Soc. 2000, 122: 6767-6768. 10.1021/ja994241m.CrossRef Yu CJ, Wan Y, Yowanto H, Li J, Tao C, James MD, Tan CL, Blackburn GF: Uridine-conjugated ferrocene DNA oligonucleotides: unexpected cyclization reaction of the uridine base. J Am Chem Soc. 2000, 122: 6767-6768. 10.1021/ja994241m.CrossRef
12.
go back to reference Vernon SD, Unger ER, Williams D: Comparison of human papillomavirus detection and typing by cycle sequencing, line blot and hybrid capture. J Clin Microbiol. 2000, 38: 651-5.PubMedPubMedCentral Vernon SD, Unger ER, Williams D: Comparison of human papillomavirus detection and typing by cycle sequencing, line blot and hybrid capture. J Clin Microbiol. 2000, 38: 651-5.PubMedPubMedCentral
13.
go back to reference Xi LF, Carter JJ, Galloway DA, Kuypers J, Hughes JP, Lee SK, Adam DE, Kiviat NB, Koutsky LA: Acquisition and natural history of human papillomavirus type 16 variant infection among a cohort of female university students. Cancer Epidemiol Biomarkers Prev. 2002, 11: 343-351.PubMed Xi LF, Carter JJ, Galloway DA, Kuypers J, Hughes JP, Lee SK, Adam DE, Kiviat NB, Koutsky LA: Acquisition and natural history of human papillomavirus type 16 variant infection among a cohort of female university students. Cancer Epidemiol Biomarkers Prev. 2002, 11: 343-351.PubMed
Metadata
Title
Bioelectronic DNA detection of human papillomaviruses using eSensor™: a model system for detection of multiple pathogens
Authors
Suzanne D Vernon
Daniel H Farkas
Elizabeth R Unger
Vivian Chan
Donna L Miller
Yin-Peng Chen
Gary F Blackburn
William C Reeves
Publication date
01-12-2003
Publisher
BioMed Central
Published in
BMC Infectious Diseases / Issue 1/2003
Electronic ISSN: 1471-2334
DOI
https://doi.org/10.1186/1471-2334-3-12

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