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Published in: Indian Journal of Gastroenterology 2/2019

01-04-2019 | Celiac Disease | Short Report

Frequency of HLA celiac disease risk alleles and haplotypes in healthy adults in Tamil Nadu

Authors: Venugopal Giriprasad, John Mechenro, Ramadass Balamurugan, Balakrishnan S. Ramakrishna

Published in: Indian Journal of Gastroenterology | Issue 2/2019

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Abstract

Celiac disease (CeD) occurs only in individuals who are able to express human leukocyte antigens (HLA) DQ2 or DQ8, and these are expressed in nearly a third of healthy people in the West. As the disease is very uncommon in Tamil Nadu, we evaluated the possibility that the relevant genes are infrequent in this population. Four hundred healthy adults without any gastrointestinal abnormalities were recruited from Vellore district of Tamil Nadu. Genomic DNA was extracted from venous blood and amplified by PCR using the allele-specific primers for the following alleles—DQA1*0201, 0301, and 0501 and DQB1*02, 0201, and 0302, which determine the CeD risk haplotypes. Among the 400 healthy adults, the presence of DQ2.5 (DQB1*0201-DQA1*0501) and DQ2.2 (DQB1*02-DQA1*0201) haplotypes was found in 8.25% and 14.25%, respectively. DQ8 (DQB1*0302-DQA1*0301) haplotype was identified in only 3% of healthy individuals. Overall, approximately a quarter of healthy adults in Tamil Nadu had the potential CeD risk haplotypes of HLA DQ2.5, DQ2.2, and DQ8.
Literature
1.
go back to reference Ludvigsson JF, Murray JA. Epidemiology of celiac disease. Gastroenterol Clin N Am. 2019;48:1–18.CrossRef Ludvigsson JF, Murray JA. Epidemiology of celiac disease. Gastroenterol Clin N Am. 2019;48:1–18.CrossRef
2.
go back to reference Sollid LM. The roles of MHC class II genes and post-translational modification in celiac disease. Immunogenetics. 2017;69:605–16.CrossRefPubMed Sollid LM. The roles of MHC class II genes and post-translational modification in celiac disease. Immunogenetics. 2017;69:605–16.CrossRefPubMed
3.
go back to reference Rashid M, Lee J. Serologic testing in celiac disease: practical guide for clinicians. Can Fam Physician. 2016;62:38–43.PubMedPubMedCentral Rashid M, Lee J. Serologic testing in celiac disease: practical guide for clinicians. Can Fam Physician. 2016;62:38–43.PubMedPubMedCentral
4.
go back to reference Wolters VM, Wijmenga C. Genetic background of celiac disease and its clinical implications. Am J Gastroenterol. 2008;103:190–5.CrossRefPubMed Wolters VM, Wijmenga C. Genetic background of celiac disease and its clinical implications. Am J Gastroenterol. 2008;103:190–5.CrossRefPubMed
5.
go back to reference Mubarak A, Spierings E, Wolters V, van Hoogstraten I, Kneepkens CMF, Houwen R. Human leukocyte antigen DQ2.2 and celiac disease. J Pediatr Gastroenterol Nutr. 2013;56:428–30.CrossRefPubMed Mubarak A, Spierings E, Wolters V, van Hoogstraten I, Kneepkens CMF, Houwen R. Human leukocyte antigen DQ2.2 and celiac disease. J Pediatr Gastroenterol Nutr. 2013;56:428–30.CrossRefPubMed
6.
go back to reference Megiorni F, Pizzuti A. HLA-DQA1 and HLA-DQB1 in celiac disease predisposition: practical implications of the HLA molecular typing. J Biomed Sci. 2012;19:88.CrossRefPubMedPubMedCentral Megiorni F, Pizzuti A. HLA-DQA1 and HLA-DQB1 in celiac disease predisposition: practical implications of the HLA molecular typing. J Biomed Sci. 2012;19:88.CrossRefPubMedPubMedCentral
7.
go back to reference De Silvestri A, Capittini C, Poddighe D, et al. HLA-DQ genetics in children with celiac disease: a meta-analysis suggesting a two-step genetic screening procedure starting with HLA-DQ β chains. Pediatr Res. 2018;83:564–72. De Silvestri A, Capittini C, Poddighe D, et al. HLA-DQ genetics in children with celiac disease: a meta-analysis suggesting a two-step genetic screening procedure starting with HLA-DQ β chains. Pediatr Res. 2018;83:564–72.
8.
go back to reference Ramakrishna BS, Makharia GK, Chetri K, et al. Prevalence of adult celiac disease in India: regional variations and associations. Am J Gastroenterol. 2016;111:115–23. Ramakrishna BS, Makharia GK, Chetri K, et al. Prevalence of adult celiac disease in India: regional variations and associations. Am J Gastroenterol. 2016;111:115–23.
9.
go back to reference Krigel A, Turner KO, Makharia GK, Green PH, Genta RM, Lebwohl B. Ethnic variations in duodenal villous atrophy consistent with celiac disease in the United States. Clin Gastroenterol Hepatol. 2016;14:1105–11.CrossRefPubMedPubMedCentral Krigel A, Turner KO, Makharia GK, Green PH, Genta RM, Lebwohl B. Ethnic variations in duodenal villous atrophy consistent with celiac disease in the United States. Clin Gastroenterol Hepatol. 2016;14:1105–11.CrossRefPubMedPubMedCentral
10.
go back to reference Scola L, Lio D, Candore G, et al. Analysis of HLA-DRB1, DQA1, DQB1 haplotypes in Sardinian centenarians. Exp Gerontol. 2008;43:114–8. Scola L, Lio D, Candore G, et al. Analysis of HLA-DRB1, DQA1, DQB1 haplotypes in Sardinian centenarians. Exp Gerontol. 2008;43:114–8.
11.
go back to reference Olerup O, Aldener A, Fogdell A. HLA-DQB1 and -DQA1 typing by PCR amplification with sequence-specific primers (PCR-SSP) in 2 hours. Tissue Antigens. 1993;41:119–34.CrossRefPubMed Olerup O, Aldener A, Fogdell A. HLA-DQB1 and -DQA1 typing by PCR amplification with sequence-specific primers (PCR-SSP) in 2 hours. Tissue Antigens. 1993;41:119–34.CrossRefPubMed
12.
go back to reference Profaizer T, Eckels D, Delgado JC. Celiac disease and HLA typing using real-time PCR with melting curve analysis. Tissue Antigens. 2011;78:31–7.CrossRefPubMed Profaizer T, Eckels D, Delgado JC. Celiac disease and HLA typing using real-time PCR with melting curve analysis. Tissue Antigens. 2011;78:31–7.CrossRefPubMed
13.
go back to reference Kårhus LL, Thuesen BH, Skaaby T, Rumessen JJ, Linneberg A. The distribution of HLA DQ2 and DQ8 haplotypes and their association with health indicators in a general Danish population. United European Gastroenterol J. 2018;6:866–78.CrossRefPubMedPubMedCentral Kårhus LL, Thuesen BH, Skaaby T, Rumessen JJ, Linneberg A. The distribution of HLA DQ2 and DQ8 haplotypes and their association with health indicators in a general Danish population. United European Gastroenterol J. 2018;6:866–78.CrossRefPubMedPubMedCentral
14.
go back to reference Lundin KE, Qiao SW, Snir O, Sollid LM. Coeliac disease - from genetic and immunological studies to clinical applications. Scand J Gastroenterol. 2015;50:708–17.CrossRefPubMed Lundin KE, Qiao SW, Snir O, Sollid LM. Coeliac disease - from genetic and immunological studies to clinical applications. Scand J Gastroenterol. 2015;50:708–17.CrossRefPubMed
15.
go back to reference Barker JM. Clinical review: type 1 diabetes-associated autoimmunity: natural history, genetic associations, and screening. J Clin Endocrinol Metab. 2006;91:1210–7.CrossRefPubMed Barker JM. Clinical review: type 1 diabetes-associated autoimmunity: natural history, genetic associations, and screening. J Clin Endocrinol Metab. 2006;91:1210–7.CrossRefPubMed
16.
go back to reference Larizza D, Calcaterra V, Klersy C, et al. Common immunogenetic profile in children with multiple autoimmune diseases: the signature of HLA-DQ pleiotropic genes. Autoimmunity. 2012;45:470–5. Larizza D, Calcaterra V, Klersy C, et al. Common immunogenetic profile in children with multiple autoimmune diseases: the signature of HLA-DQ pleiotropic genes. Autoimmunity. 2012;45:470–5.
17.
go back to reference Almeida FC, Gandolfi L, Costa KN, et al. Frequency of HLA-DQ, susceptibility genotypes for celiac disease, in Brazilian newborns. Mol Genet Genomic Med. 2018;6:779–84. Almeida FC, Gandolfi L, Costa KN, et al. Frequency of HLA-DQ, susceptibility genotypes for celiac disease, in Brazilian newborns. Mol Genet Genomic Med. 2018;6:779–84.
18.
go back to reference Al-Hussaini A, Alharthi H, Osman A, Eltayeb-Elsheikh N, Chentoufi A. Genetic susceptibility for celiac disease is highly prevalent in the Saudi population. Saudi J Gastroenterol. 2018;24:268–73.CrossRefPubMedPubMedCentral Al-Hussaini A, Alharthi H, Osman A, Eltayeb-Elsheikh N, Chentoufi A. Genetic susceptibility for celiac disease is highly prevalent in the Saudi population. Saudi J Gastroenterol. 2018;24:268–73.CrossRefPubMedPubMedCentral
19.
go back to reference Murad H, Jazairi B, Khansaa I, Olabi D, Khouri L. HLA-DQ2 and -DQ8 genotype frequency in Syrian celiac disease children: HLA-DQ relative risks evaluation. BMC Gastroenterol. 2018;18:70.CrossRefPubMedPubMedCentral Murad H, Jazairi B, Khansaa I, Olabi D, Khouri L. HLA-DQ2 and -DQ8 genotype frequency in Syrian celiac disease children: HLA-DQ relative risks evaluation. BMC Gastroenterol. 2018;18:70.CrossRefPubMedPubMedCentral
20.
go back to reference Selleski N, Almeida LM, Almeida FC, Pratesi CB, Nóbrega YKM, Gandolfi L. Prevalence of celiac disease predisposing genotype, including HLA-DQ2.2 variant, in Brazilian children. Arq Gastroenterol. 2018;55:82–5.CrossRefPubMed Selleski N, Almeida LM, Almeida FC, Pratesi CB, Nóbrega YKM, Gandolfi L. Prevalence of celiac disease predisposing genotype, including HLA-DQ2.2 variant, in Brazilian children. Arq Gastroenterol. 2018;55:82–5.CrossRefPubMed
21.
go back to reference Cabrera CM, Méndez-López IM, Caballero A. Risk variation in celiac disease in a population from southern Spain: evaluating the influence of the DQB1*02:02 allele frequency. Scand J Gastroenterol. 2018;53:266–72.CrossRefPubMed Cabrera CM, Méndez-López IM, Caballero A. Risk variation in celiac disease in a population from southern Spain: evaluating the influence of the DQB1*02:02 allele frequency. Scand J Gastroenterol. 2018;53:266–72.CrossRefPubMed
22.
go back to reference Rani R, Fernandez-Vina MA, Stastny R. Association between HLA class II alleles in a north Indian population. Tissue Antigens. 1998;52:37–43.CrossRefPubMed Rani R, Fernandez-Vina MA, Stastny R. Association between HLA class II alleles in a north Indian population. Tissue Antigens. 1998;52:37–43.CrossRefPubMed
23.
go back to reference Agrawal S, Srivastava SK, Borkar M, Chaudhuri TK. Genetic affinities of north and northeastern populations of India: inference from HLA-based study. Tissue Antigens. 2008;72:120–30.CrossRefPubMed Agrawal S, Srivastava SK, Borkar M, Chaudhuri TK. Genetic affinities of north and northeastern populations of India: inference from HLA-based study. Tissue Antigens. 2008;72:120–30.CrossRefPubMed
24.
go back to reference Shanmugalakshmi S, Balakrishnan K, Manoharan K, Pitchappan RM. HLA-DRB1*, DQB1* in Piramalai Kallars and Yadhavas, two Dravidian-speaking castes of Tamil Nadu, South India. Tissue Antigens. 2003;61:451–64.CrossRefPubMed Shanmugalakshmi S, Balakrishnan K, Manoharan K, Pitchappan RM. HLA-DRB1*, DQB1* in Piramalai Kallars and Yadhavas, two Dravidian-speaking castes of Tamil Nadu, South India. Tissue Antigens. 2003;61:451–64.CrossRefPubMed
Metadata
Title
Frequency of HLA celiac disease risk alleles and haplotypes in healthy adults in Tamil Nadu
Authors
Venugopal Giriprasad
John Mechenro
Ramadass Balamurugan
Balakrishnan S. Ramakrishna
Publication date
01-04-2019
Publisher
Springer India
Published in
Indian Journal of Gastroenterology / Issue 2/2019
Print ISSN: 0254-8860
Electronic ISSN: 0975-0711
DOI
https://doi.org/10.1007/s12664-019-00947-6

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