Skip to main content
Top
Published in: Current Atherosclerosis Reports 12/2016

01-12-2016 | Genetics (A. Marian, Section Editor)

Transcriptomic Signature of Atherosclerosis in the Peripheral Blood: Fact or Fiction?

Authors: Hsiao-Huei Chen, Alexandre F. R. Stewart

Published in: Current Atherosclerosis Reports | Issue 12/2016

Login to get access

Abstract

The notion that gene expression signatures in blood can serve as biomarkers of disease states is not new. In the case of atherosclerosis, and coronary artery disease in particular, whether changes in gene expression in peripheral blood mononuclear cells reflects disease processes occurring in the vessel wall remains controversial. When comparing 15 studies that identified 706 differentially expressed genes, only 23 genes were replicated in 2 to 3 studies, at most. This low level of replication may reflect sample sizes too small to overcome heterogeneity in the response to disease. Genetic differences affect how each person responds to disease and what genes are altered. Recent studies with larger cohorts (over 5000 individuals) that considered the effect of common genetic variants still could not claim disease signature genes as biomarkers suggesting that even larger case-control studies will be required to achieve the required statistical power. On the other hand, out of 7 studies that identified 58 microRNAs, 12 were concordant in 2 or more studies, suggesting that microRNAs may be less affected by genetic differences and more accurately reflect the disease process. Here, we review the current state of knowledge on expression profiling and its utility for predicting coronary artery disease status and mortality.
Literature
1.
go back to reference Barquera S, Pedroza-Tobias A, Medina C, Hernandez-Barrera L, Bibbins-Domingo K, Lozano R, et al. Global overview of the epidemiology of atherosclerotic cardiovascular disease. Arch Med Res. 2015;46(5):328–38.CrossRefPubMed Barquera S, Pedroza-Tobias A, Medina C, Hernandez-Barrera L, Bibbins-Domingo K, Lozano R, et al. Global overview of the epidemiology of atherosclerotic cardiovascular disease. Arch Med Res. 2015;46(5):328–38.CrossRefPubMed
2.
go back to reference Yusuf S, Hawken S, Ounpuu S, Dans T, Avezum A, Lanas F, et al. Effect of potentially modifiable risk factors associated with myocardial infarction in 52 countries (the INTERHEART study): case-control study. Lancet. 2004;364(9438):937–52.CrossRefPubMed Yusuf S, Hawken S, Ounpuu S, Dans T, Avezum A, Lanas F, et al. Effect of potentially modifiable risk factors associated with myocardial infarction in 52 countries (the INTERHEART study): case-control study. Lancet. 2004;364(9438):937–52.CrossRefPubMed
4.
go back to reference Allahverdian S, Chehroudi AC, McManus BM, Abraham T, Francis GA. Contribution of intimal smooth muscle cells to cholesterol accumulation and macrophage-like cells in human atherosclerosis. Circulation. 2014;129(15):1551–9.CrossRefPubMed Allahverdian S, Chehroudi AC, McManus BM, Abraham T, Francis GA. Contribution of intimal smooth muscle cells to cholesterol accumulation and macrophage-like cells in human atherosclerosis. Circulation. 2014;129(15):1551–9.CrossRefPubMed
5.
go back to reference Abdullah MH, Othman Z, Noor HM, Arshad SS, Yusof AK, Jamal R, et al. Peripheral blood gene expression profile of atherosclerotic coronary artery disease in patients of different ethnicity in Malaysia. J Cardiol. 2012;60(3):192–203.CrossRefPubMed Abdullah MH, Othman Z, Noor HM, Arshad SS, Yusof AK, Jamal R, et al. Peripheral blood gene expression profile of atherosclerotic coronary artery disease in patients of different ethnicity in Malaysia. J Cardiol. 2012;60(3):192–203.CrossRefPubMed
6.
go back to reference Ma J, Liew CC. Gene profiling identifies secreted protein transcripts from peripheral blood cells in coronary artery disease. J Mol Cell Cardiol. 2003;35(8):993–8.CrossRefPubMed Ma J, Liew CC. Gene profiling identifies secreted protein transcripts from peripheral blood cells in coronary artery disease. J Mol Cell Cardiol. 2003;35(8):993–8.CrossRefPubMed
7.
go back to reference Sivapalaratnam S, Basart H, Watkins NA, Maiwald S, Rendon A, Krishnan U, et al. Monocyte gene expression signature of patients with early onset coronary artery disease. PLoS One. 2012;7(2):e32166.CrossRefPubMedPubMedCentral Sivapalaratnam S, Basart H, Watkins NA, Maiwald S, Rendon A, Krishnan U, et al. Monocyte gene expression signature of patients with early onset coronary artery disease. PLoS One. 2012;7(2):e32166.CrossRefPubMedPubMedCentral
8.
go back to reference Wingrove JA, Daniels SE, Sehnert AJ, Tingley W, Elashoff MR, Rosenberg S, et al. Correlation of peripheral-blood gene expression with the extent of coronary artery stenosis. Circ Cardiovasc Genet. 2008;1(1):31–8.CrossRefPubMed Wingrove JA, Daniels SE, Sehnert AJ, Tingley W, Elashoff MR, Rosenberg S, et al. Correlation of peripheral-blood gene expression with the extent of coronary artery stenosis. Circ Cardiovasc Genet. 2008;1(1):31–8.CrossRefPubMed
9.
go back to reference Liu D, Glaser AP, Patibandla S, Blum A, Munson PJ, McCoy JP, et al. Transcriptional profiling of CD133(+) cells in coronary artery disease and effects of exercise on gene expression. Cytotherapy. 2011;13(2):227–36.CrossRefPubMedPubMedCentral Liu D, Glaser AP, Patibandla S, Blum A, Munson PJ, McCoy JP, et al. Transcriptional profiling of CD133(+) cells in coronary artery disease and effects of exercise on gene expression. Cytotherapy. 2011;13(2):227–36.CrossRefPubMedPubMedCentral
10.
go back to reference Sinnaeve PR, Donahue MP, Grass P, Seo D, Vonderscher J, Chibout SD, et al. Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease. PLoS One. 2009;4(9):e7037.CrossRefPubMedPubMedCentral Sinnaeve PR, Donahue MP, Grass P, Seo D, Vonderscher J, Chibout SD, et al. Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease. PLoS One. 2009;4(9):e7037.CrossRefPubMedPubMedCentral
11.
go back to reference Gong R, Chen MH, Peng LS, Wei SL. Common genes in coronary artery disease from Europe, Asia and North America regardless of race and lifestyle. Eur Rev Med Pharmacol Sci. 2015;19(6):1092–100.PubMed Gong R, Chen MH, Peng LS, Wei SL. Common genes in coronary artery disease from Europe, Asia and North America regardless of race and lifestyle. Eur Rev Med Pharmacol Sci. 2015;19(6):1092–100.PubMed
12.
go back to reference Kazmi N, Gaunt TR. Diagnosis of coronary heart diseases using gene expression profiling; stable coronary artery disease, cardiac ischemia with and without myocardial necrosis. PLoS One. 2016;11(3):e0149475.CrossRefPubMedPubMedCentral Kazmi N, Gaunt TR. Diagnosis of coronary heart diseases using gene expression profiling; stable coronary artery disease, cardiac ischemia with and without myocardial necrosis. PLoS One. 2016;11(3):e0149475.CrossRefPubMedPubMedCentral
13.
go back to reference • Perisic L, Aldi S, Sun Y, Folkersen L, Razuvaev A, Roy J, et al. Gene expression signatures, pathways and networks in carotid atherosclerosis. J Intern Med. 2016;279(3):293–308. This study compares diferential expression profiles of atherosclerotic lesions and peripheral blood mononuclear cells sampled from the same symptomatic and asymptomatic individuals and finds little overlap in gene expression. • Perisic L, Aldi S, Sun Y, Folkersen L, Razuvaev A, Roy J, et al. Gene expression signatures, pathways and networks in carotid atherosclerosis. J Intern Med. 2016;279(3):293–308. This study compares diferential expression profiles of atherosclerotic lesions and peripheral blood mononuclear cells sampled from the same symptomatic and asymptomatic individuals and finds little overlap in gene expression.
14.
go back to reference Joehanes R, Ying S, Huan T, Johnson AD, Raghavachari N, Wang R, et al. Gene expression signatures of coronary heart disease. Arterioscler Thromb Vasc Biol. 2013;33(6):1418–26.CrossRefPubMedPubMedCentral Joehanes R, Ying S, Huan T, Johnson AD, Raghavachari N, Wang R, et al. Gene expression signatures of coronary heart disease. Arterioscler Thromb Vasc Biol. 2013;33(6):1418–26.CrossRefPubMedPubMedCentral
15.
go back to reference Patino WD, Mian OY, Kang JG, Matoba S, Bartlett LD, Holbrook B, et al. Circulating transcriptome reveals markers of atherosclerosis. Proc Natl Acad Sci U S A. 2005;102(9):3423–8.CrossRefPubMedPubMedCentral Patino WD, Mian OY, Kang JG, Matoba S, Bartlett LD, Holbrook B, et al. Circulating transcriptome reveals markers of atherosclerosis. Proc Natl Acad Sci U S A. 2005;102(9):3423–8.CrossRefPubMedPubMedCentral
16.
go back to reference Nuhrenberg TG, Langwieser N, Binder H, Kurz T, Stratz C, Kienzle RP, et al. Transcriptome analysis in patients with progressive coronary artery disease: identification of differential gene expression in peripheral blood. J Cardiovasc Transl Res. 2013;6(1):81–93.CrossRefPubMed Nuhrenberg TG, Langwieser N, Binder H, Kurz T, Stratz C, Kienzle RP, et al. Transcriptome analysis in patients with progressive coronary artery disease: identification of differential gene expression in peripheral blood. J Cardiovasc Transl Res. 2013;6(1):81–93.CrossRefPubMed
17.
go back to reference Taurino C, Miller WH, McBride MW, McClure JD, Khanin R, Moreno MU, et al. Gene expression profiling in whole blood of patients with coronary artery disease. Clin Sci (Lond). 2010;119(8):335–43.CrossRef Taurino C, Miller WH, McBride MW, McClure JD, Khanin R, Moreno MU, et al. Gene expression profiling in whole blood of patients with coronary artery disease. Clin Sci (Lond). 2010;119(8):335–43.CrossRef
18.
19.
go back to reference McPherson R, Pertsemlidis A, Kavaslar N, Stewart A, Roberts R, Cox DR, et al. A common allele on chromosome 9 associated with coronary heart disease. Science. 2007;316(5830):1488–91.CrossRefPubMedPubMedCentral McPherson R, Pertsemlidis A, Kavaslar N, Stewart A, Roberts R, Cox DR, et al. A common allele on chromosome 9 associated with coronary heart disease. Science. 2007;316(5830):1488–91.CrossRefPubMedPubMedCentral
20.
go back to reference Schunkert H, König IR, Kathiresan S, Reilly MP, Assimes TL, Holm H, et al. Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat Genet. 2011;43(4):333–8.CrossRefPubMedPubMedCentral Schunkert H, König IR, Kathiresan S, Reilly MP, Assimes TL, Holm H, et al. Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. Nat Genet. 2011;43(4):333–8.CrossRefPubMedPubMedCentral
21.
go back to reference Deloukas P, Kanoni S, Willenborg C, Farrall M, Assimes TL, Thompson JR, et al. Large-scale association analysis identifies new risk loci for coronary artery disease. Nat Genet. 2013;45(1):25–33.CrossRefPubMed Deloukas P, Kanoni S, Willenborg C, Farrall M, Assimes TL, Thompson JR, et al. Large-scale association analysis identifies new risk loci for coronary artery disease. Nat Genet. 2013;45(1):25–33.CrossRefPubMed
22.
go back to reference Stemme S, Faber B, Holm J, Wiklund O, Witztum JL, Hansson GK. T lymphocytes from human atherosclerotic plaques recognize oxidized low density lipoprotein. Proc Natl Acad Sci U S A. 1995;92(9):3893–7.CrossRefPubMedPubMedCentral Stemme S, Faber B, Holm J, Wiklund O, Witztum JL, Hansson GK. T lymphocytes from human atherosclerotic plaques recognize oxidized low density lipoprotein. Proc Natl Acad Sci U S A. 1995;92(9):3893–7.CrossRefPubMedPubMedCentral
23.
go back to reference Corkum CP, Ings DP, Burgess C, Karwowska S, Kroll W, Michalak TI. Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPT) and standard density gradient. BMC Immunol. 2015;16:48.CrossRefPubMedPubMedCentral Corkum CP, Ings DP, Burgess C, Karwowska S, Kroll W, Michalak TI. Immune cell subsets and their gene expression profiles from human PBMC isolated by Vacutainer Cell Preparation Tube (CPT) and standard density gradient. BMC Immunol. 2015;16:48.CrossRefPubMedPubMedCentral
24.
go back to reference Elashoff MR, Nuttall R, Beineke P, Doctolero MH, Dickson M, Johnson AM, et al. Identification of factors contributing to variability in a blood-based gene expression test. PLoS One. 2012;7(7):e40068.CrossRefPubMedPubMedCentral Elashoff MR, Nuttall R, Beineke P, Doctolero MH, Dickson M, Johnson AM, et al. Identification of factors contributing to variability in a blood-based gene expression test. PLoS One. 2012;7(7):e40068.CrossRefPubMedPubMedCentral
25.
go back to reference Elashoff MR, Wingrove JA, Beineke P, Daniels SE, Tingley WG, Rosenberg S, et al. Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients. BMC Med Genomics. 2011;4:26.CrossRefPubMedPubMedCentral Elashoff MR, Wingrove JA, Beineke P, Daniels SE, Tingley WG, Rosenberg S, et al. Development of a blood-based gene expression algorithm for assessment of obstructive coronary artery disease in non-diabetic patients. BMC Med Genomics. 2011;4:26.CrossRefPubMedPubMedCentral
26.
go back to reference Rosenberg S, Elashoff MR, Beineke P, Daniels SE, Wingrove JA, Tingley WG, et al. Multicenter validation of the diagnostic accuracy of a blood-based gene expression test for assessing obstructive coronary artery disease in nondiabetic patients. Ann Intern Med. 2010;153(7):425–34.CrossRefPubMedPubMedCentral Rosenberg S, Elashoff MR, Beineke P, Daniels SE, Wingrove JA, Tingley WG, et al. Multicenter validation of the diagnostic accuracy of a blood-based gene expression test for assessing obstructive coronary artery disease in nondiabetic patients. Ann Intern Med. 2010;153(7):425–34.CrossRefPubMedPubMedCentral
27.
go back to reference Voros S, Elashoff MR, Wingrove JA, Budoff MJ, Thomas GS, Rosenberg S. A peripheral blood gene expression score is associated with atherosclerotic Plaque Burden and Stenosis by cardiovascular CT-angiography: results from the PREDICT and COMPASS studies. Atherosclerosis. 2014;233(1):284–90.CrossRefPubMed Voros S, Elashoff MR, Wingrove JA, Budoff MJ, Thomas GS, Rosenberg S. A peripheral blood gene expression score is associated with atherosclerotic Plaque Burden and Stenosis by cardiovascular CT-angiography: results from the PREDICT and COMPASS studies. Atherosclerosis. 2014;233(1):284–90.CrossRefPubMed
28.
29.
go back to reference Mitchell PS, Parkin RK, Kroh EM, Fritz BR, Wyman SK, Pogosova-Agadjanyan EL, et al. Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A. 2008;105(30):10513–8.CrossRefPubMedPubMedCentral Mitchell PS, Parkin RK, Kroh EM, Fritz BR, Wyman SK, Pogosova-Agadjanyan EL, et al. Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A. 2008;105(30):10513–8.CrossRefPubMedPubMedCentral
30.
go back to reference Lawrie CH, Gal S, Dunlop HM, Pushkaran B, Liggins AP, Pulford K, et al. Detection of elevated levels of tumour-associated microRNAs in serum of patients with diffuse large B-cell lymphoma. Br J Haematol. 2008;141(5):672–5.CrossRefPubMed Lawrie CH, Gal S, Dunlop HM, Pushkaran B, Liggins AP, Pulford K, et al. Detection of elevated levels of tumour-associated microRNAs in serum of patients with diffuse large B-cell lymphoma. Br J Haematol. 2008;141(5):672–5.CrossRefPubMed
31.
go back to reference Chen X, Ba Y, Ma L, Cai X, Yin Y, Wang K, et al. Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res. 2008;18(10):997–1006.CrossRefPubMed Chen X, Ba Y, Ma L, Cai X, Yin Y, Wang K, et al. Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res. 2008;18(10):997–1006.CrossRefPubMed
32.
go back to reference Fichtlscherer S, De Rosa S, Fox H, Schwietz T, Fischer A, Liebetrau C, et al. Circulating microRNAs in patients with coronary artery disease. Circ Res. 2010;107(5):677–84.CrossRefPubMed Fichtlscherer S, De Rosa S, Fox H, Schwietz T, Fischer A, Liebetrau C, et al. Circulating microRNAs in patients with coronary artery disease. Circ Res. 2010;107(5):677–84.CrossRefPubMed
33.
go back to reference • Karakas M, Schulte C, Appelbaum S, Ojeda F, Lackner KJ, Munzel T, et al. Circulating microRNAs strongly predict cardiovascular death in patients with coronary artery disease-results from the large AtheroGene study. Eur Heart J. 2016. doi:10.1093/eurheartj/ehw250. This study is of major importance because it provides compelling evidence for the utility of microRNAs at predicting cardiovascular mortality. • Karakas M, Schulte C, Appelbaum S, Ojeda F, Lackner KJ, Munzel T, et al. Circulating microRNAs strongly predict cardiovascular death in patients with coronary artery disease-results from the large AtheroGene study. Eur Heart J. 2016. doi:10.​1093/​eurheartj/​ehw250. This study is of major importance because it provides compelling evidence for the utility of microRNAs at predicting cardiovascular mortality.
34.
go back to reference Ren J, Zhang J, Xu N, Han G, Geng Q, Song J, et al. Signature of circulating microRNAs as potential biomarkers in vulnerable coronary artery disease. PLoS One. 2013;8(12):e80738.CrossRefPubMedPubMedCentral Ren J, Zhang J, Xu N, Han G, Geng Q, Song J, et al. Signature of circulating microRNAs as potential biomarkers in vulnerable coronary artery disease. PLoS One. 2013;8(12):e80738.CrossRefPubMedPubMedCentral
35.
go back to reference Stather PW, Sylvius N, Wild JB, Choke E, Sayers RD, Bown MJ. Differential microRNA expression profiles in peripheral arterial disease. Circ Cardiovasc Genet. 2013;6(5):490–7.CrossRefPubMed Stather PW, Sylvius N, Wild JB, Choke E, Sayers RD, Bown MJ. Differential microRNA expression profiles in peripheral arterial disease. Circ Cardiovasc Genet. 2013;6(5):490–7.CrossRefPubMed
36.
go back to reference •• Schulte C, Molz S, Appelbaum S, Karakas M, Ojeda F, Lau DM, et al. miRNA-197 and miRNA-223 predict cardiovascular death in a cohort of patients with symptomatic coronary artery disease. PLoS One. 2015;10(12):e0145930. This article is of major importance because it is the first to demonstrate the utility of micro-RNA profiles to predict cardiovascular events.CrossRefPubMedPubMedCentral •• Schulte C, Molz S, Appelbaum S, Karakas M, Ojeda F, Lau DM, et al. miRNA-197 and miRNA-223 predict cardiovascular death in a cohort of patients with symptomatic coronary artery disease. PLoS One. 2015;10(12):e0145930. This article is of major importance because it is the first to demonstrate the utility of micro-RNA profiles to predict cardiovascular events.CrossRefPubMedPubMedCentral
37.
go back to reference Hoekstra M, van der Lans CA, Halvorsen B, Gullestad L, Kuiper J, Aukrust P, et al. The peripheral blood mononuclear cell microRNA signature of coronary artery disease. Biochem Biophys Res Commun. 2010;394(3):792–7.CrossRefPubMed Hoekstra M, van der Lans CA, Halvorsen B, Gullestad L, Kuiper J, Aukrust P, et al. The peripheral blood mononuclear cell microRNA signature of coronary artery disease. Biochem Biophys Res Commun. 2010;394(3):792–7.CrossRefPubMed
38.
go back to reference Nikpay M, Goel A, Won HH, Hall LM, Willenborg C, Kanoni S, et al. A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease. Nat Genet. 2015;47(10):1121–30.CrossRefPubMedPubMedCentral Nikpay M, Goel A, Won HH, Hall LM, Willenborg C, Kanoni S, et al. A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease. Nat Genet. 2015;47(10):1121–30.CrossRefPubMedPubMedCentral
39.
go back to reference • Winsvold BS, Nelson CP, Malik R, Gormley P, Anttila V, Vander Heiden J, et al. Genetic analysis for a shared biological basis between migraine and coronary artery disease. Neurol Genet. 2015;1(1):e10. This study reveals a complex genetic relationship between migraine and coronary artery disease risk loci, providing evidence of pleiotropy. • Winsvold BS, Nelson CP, Malik R, Gormley P, Anttila V, Vander Heiden J, et al. Genetic analysis for a shared biological basis between migraine and coronary artery disease. Neurol Genet. 2015;1(1):e10. This study reveals a complex genetic relationship between migraine and coronary artery disease risk loci, providing evidence of pleiotropy.
40.
go back to reference •• Yao C, Chen BH, Joehanes R, Otlu B, Zhang X, Liu C, et al. Integromic analysis of genetic variation and gene expression identifies networks for cardiovascular disease phenotypes. Circulation. 2015;131(6):536–49. This article is of major importance because it demonstrates the robust interaction of genetic variants with personnal transcriptomic profiles in blood.CrossRefPubMed •• Yao C, Chen BH, Joehanes R, Otlu B, Zhang X, Liu C, et al. Integromic analysis of genetic variation and gene expression identifies networks for cardiovascular disease phenotypes. Circulation. 2015;131(6):536–49. This article is of major importance because it demonstrates the robust interaction of genetic variants with personnal transcriptomic profiles in blood.CrossRefPubMed
41.
go back to reference Zeller T, Wild P, Szymczak S, Rotival M, Schillert A, Castagne R, et al. Genetics and beyond—the transcriptome of human monocytes and disease susceptibility. PLoS One. 2010;5(5):e10693.CrossRefPubMedPubMedCentral Zeller T, Wild P, Szymczak S, Rotival M, Schillert A, Castagne R, et al. Genetics and beyond—the transcriptome of human monocytes and disease susceptibility. PLoS One. 2010;5(5):e10693.CrossRefPubMedPubMedCentral
Metadata
Title
Transcriptomic Signature of Atherosclerosis in the Peripheral Blood: Fact or Fiction?
Authors
Hsiao-Huei Chen
Alexandre F. R. Stewart
Publication date
01-12-2016
Publisher
Springer US
Published in
Current Atherosclerosis Reports / Issue 12/2016
Print ISSN: 1523-3804
Electronic ISSN: 1534-6242
DOI
https://doi.org/10.1007/s11883-016-0634-x

Other articles of this Issue 12/2016

Current Atherosclerosis Reports 12/2016 Go to the issue

Nutrition (A. Garg, Section Editor)

Lipid Lowering with Soluble Dietary Fiber