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Published in: Journal of Clinical Immunology 3/2010

Open Access 01-05-2010

Small RNA Regulators of T Cell-Mediated Autoimmunity

Published in: Journal of Clinical Immunology | Issue 3/2010

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Abstract

Background

MicroRNAs (miRNAs) are short single-stranded RNA molecules that regulate gene expression post-transcriptionally. Several hundred miRNAs exist in the mammalian genome and regulate developmental processes, cell cycle, and survival.

Methods

In this review, we highlight general modes of miRNA function and relate them to how such regulation can be beneficial for immune homeostasis and the prevention of autoimmune diseases. We highlight examples of experimentally verified miRNA function and their target genes in the immune system and place them in context of concepts relevant to an understanding of autoimmune pathogenesis. Where available, we refer to clinical correlations. Finally, we speculate how emerging knowledge about miRNA function in the immune system might be used diagnostically and therapeutically.
Literature
2.
go back to reference Rosenberg UB, Preiss A, Seifert E, Jackle H, Knipple DC. Production of phenocopies by Kruppel antisense RNA injection into Drosophila embryos. Nature. 1985;313:703–6.PubMedCrossRef Rosenberg UB, Preiss A, Seifert E, Jackle H, Knipple DC. Production of phenocopies by Kruppel antisense RNA injection into Drosophila embryos. Nature. 1985;313:703–6.PubMedCrossRef
3.
go back to reference Ecker JR, Davis RW. Inhibition of gene expression in plant cells by expression of antisense RNA. Proc Natl Acad Sci U S A. 1986;83:5372–6.PubMedCrossRef Ecker JR, Davis RW. Inhibition of gene expression in plant cells by expression of antisense RNA. Proc Natl Acad Sci U S A. 1986;83:5372–6.PubMedCrossRef
4.
go back to reference Izant JG, Weintraub H. Constitutive and conditional suppression of exogenous and endogenous genes by anti-sense RNA. Science. 1985;229:345–52.PubMedCrossRef Izant JG, Weintraub H. Constitutive and conditional suppression of exogenous and endogenous genes by anti-sense RNA. Science. 1985;229:345–52.PubMedCrossRef
10.
11.
go back to reference Landgraf P et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell. 2007;129:1401–14.PubMedCrossRef Landgraf P et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell. 2007;129:1401–14.PubMedCrossRef
12.
15.
go back to reference Okamura K et al. The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs. Nature. 2008;453:803–6.PubMedCrossRef Okamura K et al. The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs. Nature. 2008;453:803–6.PubMedCrossRef
17.
go back to reference Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC. Mammalian mirtron genes. Mol Cell. 2007;28:328–36.PubMedCrossRef Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC. Mammalian mirtron genes. Mol Cell. 2007;28:328–36.PubMedCrossRef
27.
go back to reference Selbach M et al. Widespread changes in protein synthesis induced by microRNAs. Nature. 2008;455:58–63.PubMedCrossRef Selbach M et al. Widespread changes in protein synthesis induced by microRNAs. Nature. 2008;455:58–63.PubMedCrossRef
28.
go back to reference Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet. 2008;9:102–14.PubMedCrossRef Filipowicz W, Bhattacharyya SN, Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet. 2008;9:102–14.PubMedCrossRef
37.
go back to reference Chen CZ, Li L, Lodish HF, Bartel DP. MicroRNAs modulate hematopoietic lineage differentiation. Science. 2004;303:83–6.PubMedCrossRef Chen CZ, Li L, Lodish HF, Bartel DP. MicroRNAs modulate hematopoietic lineage differentiation. Science. 2004;303:83–6.PubMedCrossRef
39.
go back to reference Xiao C et al. MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell. 2007;131:146–59.PubMedCrossRef Xiao C et al. MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell. 2007;131:146–59.PubMedCrossRef
40.
go back to reference Xiao C et al. Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes. Nat Immunol. 2008;9:405–14.PubMedCrossRef Xiao C et al. Lymphoproliferative disease and autoimmunity in mice with increased miR-17-92 expression in lymphocytes. Nat Immunol. 2008;9:405–14.PubMedCrossRef
41.
go back to reference Rodriguez A et al. Requirement of bic/microRNA-155 for normal immune function. Science. 2007;316:608–11.PubMedCrossRef Rodriguez A et al. Requirement of bic/microRNA-155 for normal immune function. Science. 2007;316:608–11.PubMedCrossRef
43.
go back to reference Thai TH et al. Regulation of the germinal center response by microRNA-155. Science. 2007;316:604–8.PubMedCrossRef Thai TH et al. Regulation of the germinal center response by microRNA-155. Science. 2007;316:604–8.PubMedCrossRef
44.
go back to reference Dorsett Y et al. MicroRNA-155 suppresses activation-induced cytidine deaminase-mediated Myc-Igh translocation. Immunity. 2008;28:630–8.PubMedCrossRef Dorsett Y et al. MicroRNA-155 suppresses activation-induced cytidine deaminase-mediated Myc-Igh translocation. Immunity. 2008;28:630–8.PubMedCrossRef
55.
go back to reference Wienholds E, Koudijs MJ, van Eeden FJ, Cuppen E, Plasterk RH. The microRNA-producing enzyme Dicer1 is essential for zebrafish development. Nat Genet. 2003;35:217–8. doi:10.1038/ng1251 [pii].PubMedCrossRef Wienholds E, Koudijs MJ, van Eeden FJ, Cuppen E, Plasterk RH. The microRNA-producing enzyme Dicer1 is essential for zebrafish development. Nat Genet. 2003;35:217–8. doi:10.​1038/​ng1251 [pii].PubMedCrossRef
57.
go back to reference Harfe BD, McManus MT, Mansfield JH, Hornstein E, Tabin CJ. The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb. Proc Natl Acad Sci U S A. 2005;102:10898–903.PubMedCrossRef Harfe BD, McManus MT, Mansfield JH, Hornstein E, Tabin CJ. The RNaseIII enzyme Dicer is required for morphogenesis but not patterning of the vertebrate limb. Proc Natl Acad Sci U S A. 2005;102:10898–903.PubMedCrossRef
58.
go back to reference Kanellopoulou C et al. Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes Dev. 2005;19:489–501.PubMedCrossRef Kanellopoulou C et al. Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing. Genes Dev. 2005;19:489–501.PubMedCrossRef
60.
62.
go back to reference Koralov SB et al. Dicer ablation affects antibody diversity and cell survival in the B lymphocyte lineage. Cell. 2008;132:860–74.PubMedCrossRef Koralov SB et al. Dicer ablation affects antibody diversity and cell survival in the B lymphocyte lineage. Cell. 2008;132:860–74.PubMedCrossRef
65.
go back to reference Cobb BS et al. T cell lineage choice and differentiation in the absence of the RNase III enzyme Dicer. J Exp Med. 2005;201:1367–73.PubMedCrossRef Cobb BS et al. T cell lineage choice and differentiation in the absence of the RNase III enzyme Dicer. J Exp Med. 2005;201:1367–73.PubMedCrossRef
66.
go back to reference Muljo SA et al. Aberrant T cell differentiation in the absence of Dicer. J Exp Med. 2005;202:261–9.PubMedCrossRef Muljo SA et al. Aberrant T cell differentiation in the absence of Dicer. J Exp Med. 2005;202:261–9.PubMedCrossRef
67.
go back to reference Zhou X et al. Selective miRNA disruption in T reg cells leads to uncontrolled autoimmunity. J Exp Med. 2008;205(9):1983–91.PubMedCrossRef Zhou X et al. Selective miRNA disruption in T reg cells leads to uncontrolled autoimmunity. J Exp Med. 2008;205(9):1983–91.PubMedCrossRef
68.
go back to reference Liston A, Lu LF, O'Carroll D, Tarakhovsky A, Rudensky AY. Dicer-dependent microRNA pathway safeguards regulatory T cell function. J Exp Med. 2008;205(9):1993–2004.PubMedCrossRef Liston A, Lu LF, O'Carroll D, Tarakhovsky A, Rudensky AY. Dicer-dependent microRNA pathway safeguards regulatory T cell function. J Exp Med. 2008;205(9):1993–2004.PubMedCrossRef
69.
go back to reference Brunkow ME et al. Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse. Nat Genet. 2001;27:68–73.PubMedCrossRef Brunkow ME et al. Disruption of a new forkhead/winged-helix protein, scurfin, results in the fatal lymphoproliferative disorder of the scurfy mouse. Nat Genet. 2001;27:68–73.PubMedCrossRef
75.
go back to reference Miska EA et al. Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PLoS Genet. 2007;3:e215.PubMedCrossRef Miska EA et al. Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PLoS Genet. 2007;3:e215.PubMedCrossRef
81.
go back to reference Bartel DP, Chen CZ. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet. 2004;5:396–400.PubMedCrossRef Bartel DP, Chen CZ. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet. 2004;5:396–400.PubMedCrossRef
88.
go back to reference Goodnow CC, Sprent J, Fazekas de St Groth B, Vinuesa CG. Cellular and genetic mechanisms of self tolerance and autoimmunity. Nature. 2005;435:590–7.PubMedCrossRef Goodnow CC, Sprent J, Fazekas de St Groth B, Vinuesa CG. Cellular and genetic mechanisms of self tolerance and autoimmunity. Nature. 2005;435:590–7.PubMedCrossRef
89.
go back to reference Lowe CE et al. Large-scale genetic fine mapping and genotype–phenotype associations implicate polymorphism in the IL2RA region in type 1 diabetes. Nat Genet. 2007;39:1074–82.PubMedCrossRef Lowe CE et al. Large-scale genetic fine mapping and genotype–phenotype associations implicate polymorphism in the IL2RA region in type 1 diabetes. Nat Genet. 2007;39:1074–82.PubMedCrossRef
90.
go back to reference Barrett JC et al. Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. Nat Genet. 2009. doi:ng.381 [pii] 10.1038/ng.381. Barrett JC et al. Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. Nat Genet. 2009. doi:ng.​381 [pii] 10.​1038/​ng.​381.
94.
go back to reference Tivol EA et al. Loss of CTLA-4 leads to massive lymphoproliferation and fatal multiorgan tissue destruction, revealing a critical negative regulatory role of CTLA-4. Immunity. 1995;3:541–7.PubMedCrossRef Tivol EA et al. Loss of CTLA-4 leads to massive lymphoproliferation and fatal multiorgan tissue destruction, revealing a critical negative regulatory role of CTLA-4. Immunity. 1995;3:541–7.PubMedCrossRef
95.
go back to reference Di Cristofano A et al. Impaired Fas response and autoimmunity in Pten+/- mice. Science. 1999;285:2122–5. doi:7853 [pii].PubMedCrossRef Di Cristofano A et al. Impaired Fas response and autoimmunity in Pten+/- mice. Science. 1999;285:2122–5. doi:7853 [pii].PubMedCrossRef
96.
go back to reference Bouillet P et al. Proapoptotic Bcl-2 relative Bim required for certain apoptotic responses, leukocyte homeostasis, and to preclude autoimmunity. Science. 1999;286:1735–8. doi:8026 [pii].PubMedCrossRef Bouillet P et al. Proapoptotic Bcl-2 relative Bim required for certain apoptotic responses, leukocyte homeostasis, and to preclude autoimmunity. Science. 1999;286:1735–8. doi:8026 [pii].PubMedCrossRef
97.
go back to reference Rothenberg EV, Taghon T. Molecular genetics of T cell development. Annu Rev Immunol. 2005;23:601–49.PubMedCrossRef Rothenberg EV, Taghon T. Molecular genetics of T cell development. Annu Rev Immunol. 2005;23:601–49.PubMedCrossRef
105.
go back to reference Lal G et al. Epigenetic regulation of Foxp3 expression in regulatory T cells by DNA methylation. J Immunol. 2009;182:259–73. doi:182/1/259 [pii].PubMed Lal G et al. Epigenetic regulation of Foxp3 expression in regulatory T cells by DNA methylation. J Immunol. 2009;182:259–73. doi:182/​1/​259 [pii].PubMed
113.
go back to reference Setoguchi R, Hori S, Takahashi T, Sakaguchi S. Homeostatic maintenance of natural Foxp3(+) CD25(+) CD4(+) regulatory T cells by interleukin (IL)-2 and induction of autoimmune disease by IL-2 neutralization. J Exp Med. 2005;201:723–35.PubMedCrossRef Setoguchi R, Hori S, Takahashi T, Sakaguchi S. Homeostatic maintenance of natural Foxp3(+) CD25(+) CD4(+) regulatory T cells by interleukin (IL)-2 and induction of autoimmune disease by IL-2 neutralization. J Exp Med. 2005;201:723–35.PubMedCrossRef
114.
go back to reference Tang Q et al. Central role of defective interleukin-2 production in the triggering of islet autoimmune destruction. Immunity. 2008;28:687–97.PubMedCrossRef Tang Q et al. Central role of defective interleukin-2 production in the triggering of islet autoimmune destruction. Immunity. 2008;28:687–97.PubMedCrossRef
115.
117.
go back to reference Li QJ et al. miR-181a is an intrinsic modulator of T cell sensitivity and selection. Cell. 2007;129:147–61.PubMedCrossRef Li QJ et al. miR-181a is an intrinsic modulator of T cell sensitivity and selection. Cell. 2007;129:147–61.PubMedCrossRef
121.
go back to reference Ebert PJ, Jiang S, Xie J, Li QJ, Davis MM. An endogenous positively selecting peptide enhances mature T cell responses and becomes an autoantigen in the absence of microRNA miR-181a. Nat Immunol. 2009;10:1162–9. doi:ni.1797 [pii] 10.1038/ni.1797.PubMedCrossRef Ebert PJ, Jiang S, Xie J, Li QJ, Davis MM. An endogenous positively selecting peptide enhances mature T cell responses and becomes an autoantigen in the absence of microRNA miR-181a. Nat Immunol. 2009;10:1162–9. doi:ni.​1797 [pii] 10.​1038/​ni.​1797.PubMedCrossRef
125.
go back to reference Lindberg RL, Hoffmann F, Mehling M, Kuhle J, Kappos L. Altered expression of miR-17-5p in CD4(+) lymphocytes of relapsing–remitting multiple sclerosis patients. Eur J Immunol. 2010;40:888–98. doi:10.1002/eji.200940032.PubMedCrossRef Lindberg RL, Hoffmann F, Mehling M, Kuhle J, Kappos L. Altered expression of miR-17-5p in CD4(+) lymphocytes of relapsing–remitting multiple sclerosis patients. Eur J Immunol. 2010;40:888–98. doi:10.​1002/​eji.​200940032.PubMedCrossRef
133.
go back to reference Peer D, Shimaoka M. Systemic siRNA delivery to leukocyte-implicated diseases. Cell Cycle. 2009;8:853–9. doi:7936 [pii].PubMed Peer D, Shimaoka M. Systemic siRNA delivery to leukocyte-implicated diseases. Cell Cycle. 2009;8:853–9. doi:7936 [pii].PubMed
135.
go back to reference Krutzfeldt J et al. Silencing of microRNAs in vivo with ‘antagomirs’. Nature. 2005;438:685–9.PubMedCrossRef Krutzfeldt J et al. Silencing of microRNAs in vivo with ‘antagomirs’. Nature. 2005;438:685–9.PubMedCrossRef
139.
Metadata
Title
Small RNA Regulators of T Cell-Mediated Autoimmunity
Publication date
01-05-2010
Published in
Journal of Clinical Immunology / Issue 3/2010
Print ISSN: 0271-9142
Electronic ISSN: 1573-2592
DOI
https://doi.org/10.1007/s10875-010-9392-7

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