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Published in: Journal of Clinical Immunology 5/2008

01-09-2008

Single Nucleotide Polymorphism in DNMT3B Promoter and the Risk for Idiopathic Thrombocytopenic Purpura in Chinese Population

Authors: Zhenping Chen, Zeping Zhou, Xiaoli Chen, Jianhui Xu, Aijuan Liu, Weiting Du, Dongsheng Gu, Jing Ge, Zhenxing Guo, Xiaoyan Wang, Xunwei Dong, Qian Ren, Renchi Yang

Published in: Journal of Clinical Immunology | Issue 5/2008

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Abstract

Objective

Epigenetic changes in gene expression, including DNA methylation and histone modifications, might contribute to autoimmunity. DNA methylation is mediated by a family of DNA methyltransferases. Polymorphisms of the DNA methyltransferase 3B (DNMT3B) gene may influence DNMT3B activity on DNA methylation, thereby modulating the susceptibility to some diseases. The purpose of this study was to investigate the association between the single nucleotide polymorphism (SNP) in promoter of the DNMT3B gene and the risk for development of idiopathic thrombocytopenic purpura (ITP).

Methods

In this hospital-based case-control study, the DNMT3B SNP was genotyped in 201 patients with ITP and 136 healthy controls by polymerase chain reaction-restriction fragment length polymorphism.

Results

The C/C genotype was not detected in both the patients with ITP and the controls. In the controls, the frequencies of T/T and C/T genotypes and T and C alleles were 97.8%, 2.2%, 98.9%, and 1.1%, respectively. There was no significant difference in genotype and allele distribution between the patients with ITP and the controls (P = 0.745 and 0.747, respectively). No significant difference was observed in genotype and allele distribution between the two groups when stratified by the age. The similar results were shown among the four groups of patients with ITP: acute childhood, chronic childhood, acute adult, and chronic adult.

Conclusion

This polymorphism was distributed similarly between the patients with ITP and the controls. It demonstrated that it may not be used as a stratification marker to predict the susceptibility to ITP, at least in the population of North China.
Literature
1.
go back to reference Yang R, Han ZC. Pathogenesis and management of chronic idiopathic thrombocytopenic purpura: an update. Int J Hematol. 2003;71:18–24. Yang R, Han ZC. Pathogenesis and management of chronic idiopathic thrombocytopenic purpura: an update. Int J Hematol. 2003;71:18–24.
2.
go back to reference Zhou B, Zhao H, Yang RC, Han ZC. Multi-dysfunctional pathophysiology in ITP. Crit Rev Oncol Hematol. 2005;54:107–16.PubMedCrossRef Zhou B, Zhao H, Yang RC, Han ZC. Multi-dysfunctional pathophysiology in ITP. Crit Rev Oncol Hematol. 2005;54:107–16.PubMedCrossRef
3.
4.
7.
go back to reference Sanders VM. Epigenetic regulation of Th1 and Th2 cell development. Brain Behav Immun. 2006;20:317–24.PubMedCrossRef Sanders VM. Epigenetic regulation of Th1 and Th2 cell development. Brain Behav Immun. 2006;20:317–24.PubMedCrossRef
8.
go back to reference Sekigawa I, Okada M, Ogasawara H, Kaneko H, Hishikawa T, Hashimoto H. DNA methylation in systemic lupus erythematosus. Lupus. 2003;12:79–85.PubMedCrossRef Sekigawa I, Okada M, Ogasawara H, Kaneko H, Hishikawa T, Hashimoto H. DNA methylation in systemic lupus erythematosus. Lupus. 2003;12:79–85.PubMedCrossRef
9.
go back to reference Ballestar E, Esteller M, Richardson BC. The epigenetic face of systemic lupus erythematosus. J Immunol. 2006;176:7143–7.PubMed Ballestar E, Esteller M, Richardson BC. The epigenetic face of systemic lupus erythematosus. J Immunol. 2006;176:7143–7.PubMed
11.
go back to reference Robertson KD, Keyomarsi K, Gonzales FA, Velicescu M, Jones PA. Differential mrna expression of the human DNA methyltransferases (dnmts) 1, 3a and 3b during the g(0)/g(1) to s phase transition in normal and tumor cells. Nucleic Acids Res. 2000;28:2108–13.PubMedCrossRef Robertson KD, Keyomarsi K, Gonzales FA, Velicescu M, Jones PA. Differential mrna expression of the human DNA methyltransferases (dnmts) 1, 3a and 3b during the g(0)/g(1) to s phase transition in normal and tumor cells. Nucleic Acids Res. 2000;28:2108–13.PubMedCrossRef
12.
go back to reference Liu K, Wang YF, Cantemir C, Muller MT. Endogenous assays of DNA methyltransferases: Evidence for differential activities of dnmt1, dnmt2, and dnmt3 in mammalian cells in vivo. Mol Cell Biol. 2003;23:2709–19.PubMedCrossRef Liu K, Wang YF, Cantemir C, Muller MT. Endogenous assays of DNA methyltransferases: Evidence for differential activities of dnmt1, dnmt2, and dnmt3 in mammalian cells in vivo. Mol Cell Biol. 2003;23:2709–19.PubMedCrossRef
13.
go back to reference Klose RJ, Bird AP. Genomic DNA methylation: The mark and its mediators. Trends Biochem Sci. 2006;31:89–97.PubMedCrossRef Klose RJ, Bird AP. Genomic DNA methylation: The mark and its mediators. Trends Biochem Sci. 2006;31:89–97.PubMedCrossRef
14.
go back to reference Okano M, Bell DW, Haber DA, Li E. DNA methyltransferases dnmt3a and dnmt3b are essential for de novo methylation and mammalian development. Cell. 1999;99:247–57.PubMedCrossRef Okano M, Bell DW, Haber DA, Li E. DNA methyltransferases dnmt3a and dnmt3b are essential for de novo methylation and mammalian development. Cell. 1999;99:247–57.PubMedCrossRef
15.
go back to reference Chedin F, Lieber MR, Hsieh CL. The DNA methyltransferase-like protein dnmt3l stimulates de novo methylation by dnmt3a. Proc Natl Acad Sci U S A. 2002;99:16916–21.PubMedCrossRef Chedin F, Lieber MR, Hsieh CL. The DNA methyltransferase-like protein dnmt3l stimulates de novo methylation by dnmt3a. Proc Natl Acad Sci U S A. 2002;99:16916–21.PubMedCrossRef
16.
go back to reference Hansen RS, Wijmenga C, Luo P, Stanek AM, Canfield TK, Weemaes CM, et al. The dnmt3b DNA methyltransferase gene is mutated in the icf immunodeficiency syndrome. Proc Natl Acad Sci U S A. 1999;96:14412–7.PubMedCrossRef Hansen RS, Wijmenga C, Luo P, Stanek AM, Canfield TK, Weemaes CM, et al. The dnmt3b DNA methyltransferase gene is mutated in the icf immunodeficiency syndrome. Proc Natl Acad Sci U S A. 1999;96:14412–7.PubMedCrossRef
17.
go back to reference Shen H, Wang L, Spitz MR, Hong WK, Mao L, Wei Q. A novel polymorphism in human cytosine DNA-methyltransferase-3b promoter is associated with an increased risk of lung cancer. Cancer Res. 2002;62:4992–5.PubMed Shen H, Wang L, Spitz MR, Hong WK, Mao L, Wei Q. A novel polymorphism in human cytosine DNA-methyltransferase-3b promoter is associated with an increased risk of lung cancer. Cancer Res. 2002;62:4992–5.PubMed
18.
go back to reference Wang L, Rodriguez M, Kim ES, Xu Y, Bekele N, El-Naggar AK, et al. A novel c/t polymorphism in the core promoter of human de novo cytosine DNA methyltransferase 3b6 is associated with prognosis in head and neck cancer. Int J Oncol. 2004;25:993–9.PubMed Wang L, Rodriguez M, Kim ES, Xu Y, Bekele N, El-Naggar AK, et al. A novel c/t polymorphism in the core promoter of human de novo cytosine DNA methyltransferase 3b6 is associated with prognosis in head and neck cancer. Int J Oncol. 2004;25:993–9.PubMed
19.
go back to reference Lee SJ, Jeon HS, Jang JS, Park SH, Lee GY, Lee BH, et al. Dnmt3b polymorphisms and risk of primary lung cancer. Carcinogenesis. 2005;26:403–9.PubMedCrossRef Lee SJ, Jeon HS, Jang JS, Park SH, Lee GY, Lee BH, et al. Dnmt3b polymorphisms and risk of primary lung cancer. Carcinogenesis. 2005;26:403–9.PubMedCrossRef
20.
go back to reference Wang T, Zhao H, Ren H, Guo J, Xu M, Yang R, et al. Type 1 and type 2 T-cell profiles in idiopathic thrombocytopenic purpura. Haematologica. 2005;90:914–23.PubMed Wang T, Zhao H, Ren H, Guo J, Xu M, Yang R, et al. Type 1 and type 2 T-cell profiles in idiopathic thrombocytopenic purpura. Haematologica. 2005;90:914–23.PubMed
21.
go back to reference George JN, Woolf SH, Raskob GE, Wasser JS, Aledort LM, Ballem PJ, et al. Idiopathic thrombocytopenic purpura: A practice guideline developed by explicit methods for the American Society of Hematology. Blood. 1996;88:3–40.PubMed George JN, Woolf SH, Raskob GE, Wasser JS, Aledort LM, Ballem PJ, et al. Idiopathic thrombocytopenic purpura: A practice guideline developed by explicit methods for the American Society of Hematology. Blood. 1996;88:3–40.PubMed
22.
go back to reference Zeller B, Rajantie J, Hedlund-Treutiger I, Tedgard U, Wesenberg F, Jonsson OG, et al. Childhood idiopathic thrombocytopenic purpura in the nordic countries: Epidemiology and predictors of chronic disease. Acta Paediatr. 2005;94:178–84.PubMedCrossRef Zeller B, Rajantie J, Hedlund-Treutiger I, Tedgard U, Wesenberg F, Jonsson OG, et al. Childhood idiopathic thrombocytopenic purpura in the nordic countries: Epidemiology and predictors of chronic disease. Acta Paediatr. 2005;94:178–84.PubMedCrossRef
23.
go back to reference Zhao H, Li H, Zhang L, Wang T, Ji L, Yang R. Retrospective analysis of 472 chinese children with chronic idiopathic thrombocytopenic purpura: A single center experience. Haematologica. 2005;90:860–1.PubMed Zhao H, Li H, Zhang L, Wang T, Ji L, Yang R. Retrospective analysis of 472 chinese children with chronic idiopathic thrombocytopenic purpura: A single center experience. Haematologica. 2005;90:860–1.PubMed
24.
go back to reference Chen X, Xu J, Chen Z, Zhou Z, Feng X, Zhou Y, et al. Interferon-gamma +874a/t and interleukin-4 intron3 vntr gene polymorphisms in Chinese patients with idiopathic thrombocytopenic purpura. Eur J Haematol. 2007;79:191–7.PubMedCrossRef Chen X, Xu J, Chen Z, Zhou Z, Feng X, Zhou Y, et al. Interferon-gamma +874a/t and interleukin-4 intron3 vntr gene polymorphisms in Chinese patients with idiopathic thrombocytopenic purpura. Eur J Haematol. 2007;79:191–7.PubMedCrossRef
25.
go back to reference Ansel KM, Lee DU, Rao A. An epigenetic view of helper T cell differentiation. Nat Immunol. 2003;4:616–23.PubMedCrossRef Ansel KM, Lee DU, Rao A. An epigenetic view of helper T cell differentiation. Nat Immunol. 2003;4:616–23.PubMedCrossRef
26.
go back to reference Reik W, Walter J. Evolution of imprinting mechanisms: The battle of the sexes begins in the zygote. Nat Genet. 2001;27:255–6.PubMedCrossRef Reik W, Walter J. Evolution of imprinting mechanisms: The battle of the sexes begins in the zygote. Nat Genet. 2001;27:255–6.PubMedCrossRef
27.
go back to reference Richardson BC, Strahler JR, Pivirotto TS, Quddus J, Bayliss GE, Gross L, et al. Phenotypic and functional similarities between 5-azacytidine-treated T cells and a T cell subset in patients with active systemic lupus erythematosus. Arthritis Rheum. 1992;35:47–62.PubMedCrossRef Richardson BC, Strahler JR, Pivirotto TS, Quddus J, Bayliss GE, Gross L, et al. Phenotypic and functional similarities between 5-azacytidine-treated T cells and a T cell subset in patients with active systemic lupus erythematosus. Arthritis Rheum. 1992;35:47–62.PubMedCrossRef
28.
go back to reference Narayan A, Ji W, Zhang XY, Marrogi A, Graff JR, Baylin SB, et al. Hypomethylation of pericentromeric DNA in breast adenocarcinomas. Int J Cancer. 1998;77:833–8.PubMedCrossRef Narayan A, Ji W, Zhang XY, Marrogi A, Graff JR, Baylin SB, et al. Hypomethylation of pericentromeric DNA in breast adenocarcinomas. Int J Cancer. 1998;77:833–8.PubMedCrossRef
29.
go back to reference Richardson BC, Liebling MR, Hudson JL. Cd4+ cells treated with DNA methylation inhibitors induce autologous b cell differentiation. Clin Immunol Immunopathol. 1990;55:368–81.PubMedCrossRef Richardson BC, Liebling MR, Hudson JL. Cd4+ cells treated with DNA methylation inhibitors induce autologous b cell differentiation. Clin Immunol Immunopathol. 1990;55:368–81.PubMedCrossRef
30.
go back to reference Deng C, Kaplan MJ, Yang J, Ray D, Zhang Z, McCune WJ, et al. Decreased ras-mitogen-activated protein kinase signaling may cause DNA hypomethylation in T lymphocytes from lupus patients. Arthritis Rheum. 2001;44:397–407.PubMedCrossRef Deng C, Kaplan MJ, Yang J, Ray D, Zhang Z, McCune WJ, et al. Decreased ras-mitogen-activated protein kinase signaling may cause DNA hypomethylation in T lymphocytes from lupus patients. Arthritis Rheum. 2001;44:397–407.PubMedCrossRef
31.
go back to reference Montgomery KG, Liu MC, Eccles DM, Campbell IG. The dnmt3b C–>T promoter polymorphism and risk of breast cancer in a British population: A case-control study. Breast Cancer Res. 2004;6:R390–4.PubMedCrossRef Montgomery KG, Liu MC, Eccles DM, Campbell IG. The dnmt3b C–>T promoter polymorphism and risk of breast cancer in a British population: A case-control study. Breast Cancer Res. 2004;6:R390–4.PubMedCrossRef
Metadata
Title
Single Nucleotide Polymorphism in DNMT3B Promoter and the Risk for Idiopathic Thrombocytopenic Purpura in Chinese Population
Authors
Zhenping Chen
Zeping Zhou
Xiaoli Chen
Jianhui Xu
Aijuan Liu
Weiting Du
Dongsheng Gu
Jing Ge
Zhenxing Guo
Xiaoyan Wang
Xunwei Dong
Qian Ren
Renchi Yang
Publication date
01-09-2008
Publisher
Springer US
Published in
Journal of Clinical Immunology / Issue 5/2008
Print ISSN: 0271-9142
Electronic ISSN: 1573-2592
DOI
https://doi.org/10.1007/s10875-008-9198-z

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