Skip to main content
Top
Published in: Journal of Assisted Reproduction and Genetics 2/2020

01-02-2020 | Infertility | Genetics

AZF deletions in Indian populations: original study and meta-analyses

Authors: Andrabi Syed Waseem, Vertika Singh, Girish Chandra Makker, Sameer Trivedi, Geetanjali Mishra, Kiran Singh, Singh Rajender

Published in: Journal of Assisted Reproduction and Genetics | Issue 2/2020

Login to get access

Abstract

Purpose

To identify the frequency of Y chromosome microdeletions in Indian populations and to quantitatively estimate the significance of association between these deletions and male infertility.

Methods

A total of 379 infertile males (302 azoospermic and 77 oligozoospermic infertile males) and 265 normozoospermic fertile males were evaluated for Y chromosome microdeletions (YCD) using PCR amplification and gel electrophoresis. Meta-analyses were performed on AZFa (2079 cases and 1217 controls), AZFb (2212 cases and 1267 controls), AZFc (4131 cases and 2008 controls), and AZFb+c (1573 cases and 942 controls) deletions data to quantitatively estimate the significance of association between these deletions and male infertility in Indian populations.

Results

The results revealed that out of 379 infertile azoospermic and oligozoospermic males, 38 (10.02%) had AZF deletions. No deletion was found in control samples. The highest percentage of deletions was observed in the AZFc region, followed by AZFa and AZFb. Qualitative analysis showed that AZF deletions were present in 0.59 to 32.62% (average 13.48%) of infertile cases in Indian populations. Meta-analysis revealed a significant association of AZFa (OR = 6.74, p value = 0.001), AZFb (OR = 4.694, p value = 0.004), AZFc (OR = 13.575, p value = 0.000), and AZFb+c (OR = 5.946, p value = 0.018) deletions with male infertility.

Conclusion

AZF deletions were seen in 10.02% of azoospermic and oligozoospermic cases with the highest frequency of AZFc deletions. Pooled analysis for all studies showed deletion frequency from 0.59 to 32.62% (average = 13.48%). Meta-analysis showed significant association of AZFa, AZFb, and AZFb+c deletions with male infertility. Analysis of Y chromosome microdeletions should be reckoned as an essential testing for diagnostic and therapeutic purposes.
Appendix
Available only for authorised users
Literature
1.
go back to reference Tiepolo L, Zuffardi O. Localization of factors controlling spermatogenesis in the nonfluorescent portion of the human Y chromosome long arm. Hum Genet. 1976;34:119–24.CrossRef Tiepolo L, Zuffardi O. Localization of factors controlling spermatogenesis in the nonfluorescent portion of the human Y chromosome long arm. Hum Genet. 1976;34:119–24.CrossRef
2.
go back to reference Bansal SK, Jaiswal D, Gupta N, Singh K, Dada R, Sankhwar SN, et al. Gr/gr deletions on Y-chromosome correlate with male infertility: an original study, meta-analyses, and trial sequential analyses. Sci Rep. 2016;6:19798.CrossRef Bansal SK, Jaiswal D, Gupta N, Singh K, Dada R, Sankhwar SN, et al. Gr/gr deletions on Y-chromosome correlate with male infertility: an original study, meta-analyses, and trial sequential analyses. Sci Rep. 2016;6:19798.CrossRef
3.
go back to reference Krausz C, Hoefsloot L, Simoni M, Tüttelmann F. EAA/EMQN best practice guidelines for molecular diagnosis of Y-chromosomal microdeletions: state-of-the-art 2013. Andrology. 2014;2:5–19.CrossRef Krausz C, Hoefsloot L, Simoni M, Tüttelmann F. EAA/EMQN best practice guidelines for molecular diagnosis of Y-chromosomal microdeletions: state-of-the-art 2013. Andrology. 2014;2:5–19.CrossRef
4.
go back to reference Cooper TG, Noonan E, von Eckardstein S, et al. World Health Organization reference values for human semen characteristics. Hum Reprod Update. 2010;16:231–45.CrossRef Cooper TG, Noonan E, von Eckardstein S, et al. World Health Organization reference values for human semen characteristics. Hum Reprod Update. 2010;16:231–45.CrossRef
5.
go back to reference Dada R, Gupta NP, Kucheria K. Molecular screening for Yq microdeletion in men with idiopathic oligozoospermia and azoospermia. J Biosci. 2003;28:163–8.CrossRef Dada R, Gupta NP, Kucheria K. Molecular screening for Yq microdeletion in men with idiopathic oligozoospermia and azoospermia. J Biosci. 2003;28:163–8.CrossRef
6.
go back to reference Rani DS, Rajender S, Pavani K, Chaubey G, Rasalkar AA, Gupta NJ, et al. High frequencies of non allelic homologous recombination (NAHR) events at the AZF loci and male infertility risk in Indian men. Sci Rep. 2019;9:6276.CrossRef Rani DS, Rajender S, Pavani K, Chaubey G, Rasalkar AA, Gupta NJ, et al. High frequencies of non allelic homologous recombination (NAHR) events at the AZF loci and male infertility risk in Indian men. Sci Rep. 2019;9:6276.CrossRef
7.
go back to reference Sen S, Ambulkar P, Hinduja I, Zaveri K, Gokral J, Pal A, et al. Susceptibility of gr/gr rearrangements to azoospermia or oligozoospermia is dependent on DAZ and CDY1 gene copy deletions. J Assist Reprod Genet. 2015;32:1333–41.CrossRef Sen S, Ambulkar P, Hinduja I, Zaveri K, Gokral J, Pal A, et al. Susceptibility of gr/gr rearrangements to azoospermia or oligozoospermia is dependent on DAZ and CDY1 gene copy deletions. J Assist Reprod Genet. 2015;32:1333–41.CrossRef
8.
go back to reference Ambulkar PS, Pande SS. Male infertility: screening of azoospermia factor (AZF) microdeletion in idiopathic infertile men. J Exp Biol Agric Sci. 2017;5:7–13. Ambulkar PS, Pande SS. Male infertility: screening of azoospermia factor (AZF) microdeletion in idiopathic infertile men. J Exp Biol Agric Sci. 2017;5:7–13.
9.
go back to reference Nailwal M, Chauhan JB. Gene scanning for microdeletions in the azoospermia factor region of Y-chromosome in infertile men of Gujarat, India. J Clin diagn Res. 2017;11:GC01.PubMedPubMedCentral Nailwal M, Chauhan JB. Gene scanning for microdeletions in the azoospermia factor region of Y-chromosome in infertile men of Gujarat, India. J Clin diagn Res. 2017;11:GC01.PubMedPubMedCentral
10.
go back to reference Singh K, Raman R. Male infertility: Y-chromosome deletion and testicular aetiology in cases of azoo-/oligospermia. Indian J Exp Biol. 2005;43:1088–92.PubMed Singh K, Raman R. Male infertility: Y-chromosome deletion and testicular aetiology in cases of azoo-/oligospermia. Indian J Exp Biol. 2005;43:1088–92.PubMed
11.
go back to reference Ambulkar PS, Sigh R, Reddy MVR, Varma PS, Gupta DO, Shende MR, et al. Genetic risk of Azoospermia Factor (AZF) microdeletions in idiopathic cases of azoospermia and oligozoospermia in Central Indian population. J Clin diagn Res. 2014;8:88.PubMedPubMedCentral Ambulkar PS, Sigh R, Reddy MVR, Varma PS, Gupta DO, Shende MR, et al. Genetic risk of Azoospermia Factor (AZF) microdeletions in idiopathic cases of azoospermia and oligozoospermia in Central Indian population. J Clin diagn Res. 2014;8:88.PubMedPubMedCentral
12.
go back to reference Mitra A, Dada R, Kumar R, Gupta NP, Kucheria K, Gupta SK. Screening for Y-chromosome microdeletions in infertile Indian males: utility of simplified multiplex PCR. Indian J Med Res. 2008;127:124–32.PubMed Mitra A, Dada R, Kumar R, Gupta NP, Kucheria K, Gupta SK. Screening for Y-chromosome microdeletions in infertile Indian males: utility of simplified multiplex PCR. Indian J Med Res. 2008;127:124–32.PubMed
13.
go back to reference Dada R, Gupta NP, Kucheria K. Yq microdeletions—azoospermia factor candidate genes and spermatogenic arrest. J Biomol Tech. 2004;15:176.PubMedPubMedCentral Dada R, Gupta NP, Kucheria K. Yq microdeletions—azoospermia factor candidate genes and spermatogenic arrest. J Biomol Tech. 2004;15:176.PubMedPubMedCentral
14.
go back to reference Athalye AS, Madon PF, Naik NJ, Naik DJ, Gavas SS, Dhumal SB, et al. A study of Y chromosome microdeletions in infertile Indian males. Int J Hum Genet. 2004;4:179–85.CrossRef Athalye AS, Madon PF, Naik NJ, Naik DJ, Gavas SS, Dhumal SB, et al. A study of Y chromosome microdeletions in infertile Indian males. Int J Hum Genet. 2004;4:179–85.CrossRef
15.
go back to reference Higgins JPT, Altman DG, Gøtzsche PC, Jüni P, Moher D, Oxman AD, et al. The Cochrane Collaboration’s tool for assessing risk of bias in randomised trials. Bmj. 2011;343:d5928.CrossRef Higgins JPT, Altman DG, Gøtzsche PC, Jüni P, Moher D, Oxman AD, et al. The Cochrane Collaboration’s tool for assessing risk of bias in randomised trials. Bmj. 2011;343:d5928.CrossRef
16.
go back to reference Thorlund K, Devereaux PJ, Wetterslev J, Guyatt G, Ioannidis JPA, Thabane L, et al. Can trial sequential monitoring boundaries reduce spurious inferences from meta-analyses? Int J Epidemiol. 2008;38:276–86.CrossRef Thorlund K, Devereaux PJ, Wetterslev J, Guyatt G, Ioannidis JPA, Thabane L, et al. Can trial sequential monitoring boundaries reduce spurious inferences from meta-analyses? Int J Epidemiol. 2008;38:276–86.CrossRef
17.
go back to reference Zhang S, Tang Q, Wu W, Yuan B, Lu C, Xia Y, et al. Association between DAZL polymorphisms and susceptibility to male infertility: systematic review with meta-analysis and trial sequential analysis. Sci Rep. 2014;4:4642.CrossRef Zhang S, Tang Q, Wu W, Yuan B, Lu C, Xia Y, et al. Association between DAZL polymorphisms and susceptibility to male infertility: systematic review with meta-analysis and trial sequential analysis. Sci Rep. 2014;4:4642.CrossRef
18.
go back to reference Reijo R, Lee T-Y, Salo P, Alagappan R, Brown LG, Rosenberg M, et al. Diverse spermatogenic defects in humans caused by Y chromosome deletions encompassing a novel RNA-binding protein gene. Hum Reprod. 1996;11:27–54.CrossRef Reijo R, Lee T-Y, Salo P, Alagappan R, Brown LG, Rosenberg M, et al. Diverse spermatogenic defects in humans caused by Y chromosome deletions encompassing a novel RNA-binding protein gene. Hum Reprod. 1996;11:27–54.CrossRef
19.
go back to reference Repping S, van Daalen SKM, Brown LG, Korver CM, Lange J, Marszalek JD, et al. High mutation rates have driven extensive structural polymorphism among human Y chromosomes. Nat Genet. 2006;38:463.CrossRef Repping S, van Daalen SKM, Brown LG, Korver CM, Lange J, Marszalek JD, et al. High mutation rates have driven extensive structural polymorphism among human Y chromosomes. Nat Genet. 2006;38:463.CrossRef
20.
go back to reference Foresta C, Moro E, Ferlin A. Y chromosome microdeletions and alterations of spermatogenesis. Endocr Rev. 2001;22:226–39.PubMed Foresta C, Moro E, Ferlin A. Y chromosome microdeletions and alterations of spermatogenesis. Endocr Rev. 2001;22:226–39.PubMed
21.
go back to reference Vogt PH, Bender U, Zimmer J, Strowitzki T. Human Y chromosome and male infertility: forward and back from azoospermia factor chromatin structure to azoospermia factor gene function. Basel: Genet. Hum. Infertil. Karger Publishers; 2017. p. 57–73. Vogt PH, Bender U, Zimmer J, Strowitzki T. Human Y chromosome and male infertility: forward and back from azoospermia factor chromatin structure to azoospermia factor gene function. Basel: Genet. Hum. Infertil. Karger Publishers; 2017. p. 57–73.
22.
go back to reference Vijesh VV, Nambiar V, Mohammed SIK, Sukumaran S, Suganthi R. Screening for AZFc partial deletions in Dravidian men with nonobstructive azoospermia and oligozoospermia. Genet Test Mol Biomarkers. 2015;19:150–5.CrossRef Vijesh VV, Nambiar V, Mohammed SIK, Sukumaran S, Suganthi R. Screening for AZFc partial deletions in Dravidian men with nonobstructive azoospermia and oligozoospermia. Genet Test Mol Biomarkers. 2015;19:150–5.CrossRef
23.
go back to reference Yang Y, Ma M, Li L, Zhang W, Chen P, Ma Y, et al. Y chromosome haplogroups may confer susceptibility to partial AZFc deletions and deletion effect on spermatogenesis impairment. Hum Reprod. 2008;23:2167–72.CrossRef Yang Y, Ma M, Li L, Zhang W, Chen P, Ma Y, et al. Y chromosome haplogroups may confer susceptibility to partial AZFc deletions and deletion effect on spermatogenesis impairment. Hum Reprod. 2008;23:2167–72.CrossRef
24.
go back to reference Bansal SK, Gupta G, Rajender S. Y chromosome b2/b3 deletions and male infertility: a comprehensive meta-analysis, trial sequential analysis and systematic review. Mutat Res Rev Mutat Res. 2016;768:78–90.CrossRef Bansal SK, Gupta G, Rajender S. Y chromosome b2/b3 deletions and male infertility: a comprehensive meta-analysis, trial sequential analysis and systematic review. Mutat Res Rev Mutat Res. 2016;768:78–90.CrossRef
25.
go back to reference Brandell RA, Mielnik A, Liotta D, Ye Z, Veeck LL, Palermo GD, et al. AZFb deletions predict the absence of spermatozoa with testicular sperm extraction: preliminary report of a prognostic genetic test. Hum Reprod. 1998;13:2812–5.CrossRef Brandell RA, Mielnik A, Liotta D, Ye Z, Veeck LL, Palermo GD, et al. AZFb deletions predict the absence of spermatozoa with testicular sperm extraction: preliminary report of a prognostic genetic test. Hum Reprod. 1998;13:2812–5.CrossRef
26.
go back to reference Hopps CV, Mielnik A, Goldstein M, Palermo GD, Rosenwaks Z, Schlegel PN. Detection of sperm in men with Y chromosome microdeletions of the AZFa, AZFb and AZFc regions. Hum Reprod. 2003;18:1660–16654.CrossRef Hopps CV, Mielnik A, Goldstein M, Palermo GD, Rosenwaks Z, Schlegel PN. Detection of sperm in men with Y chromosome microdeletions of the AZFa, AZFb and AZFc regions. Hum Reprod. 2003;18:1660–16654.CrossRef
27.
go back to reference Mantel N, Haenszel W. Statistical aspects of the analysis of data from retrospective studies of disease. J Natl Cancer Inst. 1959;22:719–48.PubMed Mantel N, Haenszel W. Statistical aspects of the analysis of data from retrospective studies of disease. J Natl Cancer Inst. 1959;22:719–48.PubMed
28.
go back to reference DerSimonian R, Laird N. Meta-analysis in clinical trials. Control Clin Trials. 1986;7:177–88.CrossRef DerSimonian R, Laird N. Meta-analysis in clinical trials. Control Clin Trials. 1986;7:177–88.CrossRef
Metadata
Title
AZF deletions in Indian populations: original study and meta-analyses
Authors
Andrabi Syed Waseem
Vertika Singh
Girish Chandra Makker
Sameer Trivedi
Geetanjali Mishra
Kiran Singh
Singh Rajender
Publication date
01-02-2020
Publisher
Springer US
Published in
Journal of Assisted Reproduction and Genetics / Issue 2/2020
Print ISSN: 1058-0468
Electronic ISSN: 1573-7330
DOI
https://doi.org/10.1007/s10815-019-01661-0

Other articles of this Issue 2/2020

Journal of Assisted Reproduction and Genetics 2/2020 Go to the issue