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Published in: European Journal of Clinical Microbiology & Infectious Diseases 5/2014

01-05-2014 | Article

Evaluation of two matrix-assisted laser desorption ionization–time of flight mass spectrometry systems for identification of viridans group streptococci

Authors: P. Kärpänoja, I. Harju, K. Rantakokko-Jalava, M. Haanperä, H. Sarkkinen

Published in: European Journal of Clinical Microbiology & Infectious Diseases | Issue 5/2014

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Abstract

In this study, the performances of two matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS) systems, MALDI Biotyper (Bruker Daltonics) and VITEK MS (bioMérieux), were evaluated in the identification of viridans group streptococci. Two collections of isolates were tested with both methods. From a panel of type collection strains (n = 54), MALDI Biotyper gave correct species-level identification for 51/54 (94 %) strains and 37/54 (69 %) strains for the VITEK MS in vitro diagnostic (IVD) method. Additionally, a collection of blood cultures isolates which had been characterized earlier with partial sequencing of 16S rRNA (n = 97) was analyzed. MALDI Biotyper classified 89 % and VITEK MS 93 % of these correctly to the group level. Comparison of species-level identification from the blood culture collection was possible for 36 strains. MALDI Biotyper identified 75 % and VITEK MS 97 % of these strains consistently. Among the clinical isolates, MALDI Biotyper misidentified 36 strains as Streptococcus pneumoniae. Nevertheless, our results suggest that the current MALDI-TOF methods are a good alternative for the identification of viridans streptococci and do perform as well as or better than commercial phenotypical methods.
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Literature
1.
go back to reference Spellberg B, Brandt C (2011) Streptococcus. In: Versalovic J, Carroll KC, Funke G, Jorgensen JH, Landry ML, Warnock DW (eds) Manual of clinical microbiology, 10th edn. ASM Press, Washington DC, pp 331–349 Spellberg B, Brandt C (2011) Streptococcus. In: Versalovic J, Carroll KC, Funke G, Jorgensen JH, Landry ML, Warnock DW (eds) Manual of clinical microbiology, 10th edn. ASM Press, Washington DC, pp 331–349
2.
go back to reference Doern CD, Burnham CAD (2010) It’s not easy being green: the viridans group streptococci, with a focus on pediatric clinical manifestations. J Clin Microbiol 48:3829–3835PubMedCentralPubMedCrossRef Doern CD, Burnham CAD (2010) It’s not easy being green: the viridans group streptococci, with a focus on pediatric clinical manifestations. J Clin Microbiol 48:3829–3835PubMedCentralPubMedCrossRef
3.
go back to reference Sinner SW, Tunkel AR (2009) Viridans streptococci, groups C and G streptococci, and Gemella species. In: Mandell GL, Bennett JE, Dolin R (eds) Mandell, Douglas, and Bennett’s principles and practice of infectious diseases, 7th edn. Churchill Livingstone Elsevier, Philadelphia, pp 2667–2680 Sinner SW, Tunkel AR (2009) Viridans streptococci, groups C and G streptococci, and Gemella species. In: Mandell GL, Bennett JE, Dolin R (eds) Mandell, Douglas, and Bennett’s principles and practice of infectious diseases, 7th edn. Churchill Livingstone Elsevier, Philadelphia, pp 2667–2680
4.
go back to reference Klein RS, Recco RA, Catalano MT, Edberg SC, Casey JI, Steigbigel NH (1977) Association of Streptococcus bovis with carcinoma of the colon. N Engl J Med 297:800–802PubMedCrossRef Klein RS, Recco RA, Catalano MT, Edberg SC, Casey JI, Steigbigel NH (1977) Association of Streptococcus bovis with carcinoma of the colon. N Engl J Med 297:800–802PubMedCrossRef
5.
go back to reference Arbique JC, Poyart C, Trieu-Cuot P, Quesne G, Carvalho Mda G, Steigerwalt AG, Morey RE, Jackson D, Davidson RJ, Facklam RR (2004) Accuracy of phenotypic and genotypic testing for identification of Streptococcus pneumoniae and description of Streptococcus pseudopneumoniae sp. nov. J Clin Microbiol 42:4686–4696PubMedCentralPubMedCrossRef Arbique JC, Poyart C, Trieu-Cuot P, Quesne G, Carvalho Mda G, Steigerwalt AG, Morey RE, Jackson D, Davidson RJ, Facklam RR (2004) Accuracy of phenotypic and genotypic testing for identification of Streptococcus pneumoniae and description of Streptococcus pseudopneumoniae sp. nov. J Clin Microbiol 42:4686–4696PubMedCentralPubMedCrossRef
6.
go back to reference Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, Ouellette M, Roy PH, Bergeron MG (2004) Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species. J Clin Microbiol 42:3686–3695PubMedCentralPubMedCrossRef Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, Ouellette M, Roy PH, Bergeron MG (2004) Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species. J Clin Microbiol 42:3686–3695PubMedCentralPubMedCrossRef
7.
go back to reference Poyart C, Quesne G, Trieu-Cuot P (2002) Taxonomic dissection of the Streptococcus bovis group by analysis of manganese-dependent superoxide dismutase gene (sodA) sequences: reclassification of ‘Streptococcus infantarius subsp. coli’ as Streptococcus lutetiensis sp. nov. and of Streptococcus bovis biotype II.2 as Streptococcus pasterianus sp. nov. Int J Syst Evol Microbiol 52:1247–1255PubMedCrossRef Poyart C, Quesne G, Trieu-Cuot P (2002) Taxonomic dissection of the Streptococcus bovis group by analysis of manganese-dependent superoxide dismutase gene (sodA) sequences: reclassification of ‘Streptococcus infantarius subsp. coli’ as Streptococcus lutetiensis sp. nov. and of Streptococcus bovis biotype II.2 as Streptococcus pasterianus sp. nov. Int J Syst Evol Microbiol 52:1247–1255PubMedCrossRef
9.
go back to reference Wessels E, Schelfaut JJG, Bernards AT, Claas ECJ (2012) Evaluation of several biochemical and molecular techniques for identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae and their detection in respiratory samples. J Clin Microbiol 50:1171–1177PubMedCentralPubMedCrossRef Wessels E, Schelfaut JJG, Bernards AT, Claas ECJ (2012) Evaluation of several biochemical and molecular techniques for identification of Streptococcus pneumoniae and Streptococcus pseudopneumoniae and their detection in respiratory samples. J Clin Microbiol 50:1171–1177PubMedCentralPubMedCrossRef
10.
go back to reference Ikryannikova LN, Lapin KN, Malakhova MV, Filimonova AV, Ilina EN, Dubovickaya VA, Sidorenko SV, Govorun VM (2011) Misidentification of alpha-hemolytic streptococci by routine tests in clinical practice. Infect Genet Evol 11:1709–1715PubMedCrossRef Ikryannikova LN, Lapin KN, Malakhova MV, Filimonova AV, Ilina EN, Dubovickaya VA, Sidorenko SV, Govorun VM (2011) Misidentification of alpha-hemolytic streptococci by routine tests in clinical practice. Infect Genet Evol 11:1709–1715PubMedCrossRef
11.
go back to reference Bascomb S, Manafi M (1998) Use of enzyme tests in characterization and identification of aerobic and facultatively anaerobic gram-positive cocci. Clin Microbiol Rev 11:318–340PubMedCentralPubMed Bascomb S, Manafi M (1998) Use of enzyme tests in characterization and identification of aerobic and facultatively anaerobic gram-positive cocci. Clin Microbiol Rev 11:318–340PubMedCentralPubMed
12.
go back to reference Chatzigeorgiou K-S, Sergentanis TN, Tsiodras S, Hamodrakas SJ, Bagos PG (2011) Phoenix 100 versus Vitek 2 in the identification of gram-positive and gram-negative bacteria: a comprehensive meta-analysis. J Clin Microbiol 49:3284–3291PubMedCentralPubMedCrossRef Chatzigeorgiou K-S, Sergentanis TN, Tsiodras S, Hamodrakas SJ, Bagos PG (2011) Phoenix 100 versus Vitek 2 in the identification of gram-positive and gram-negative bacteria: a comprehensive meta-analysis. J Clin Microbiol 49:3284–3291PubMedCentralPubMedCrossRef
13.
go back to reference Summanen PH, Rowlinson M-C, Wooton J, Finegold SM (2009) Evaluation of genotypic and phenotypic methods for differentiation of the members of the Anginosus group streptococci. Eur J Clin Microbiol Infect Dis 28:1123–1128PubMedCentralPubMedCrossRef Summanen PH, Rowlinson M-C, Wooton J, Finegold SM (2009) Evaluation of genotypic and phenotypic methods for differentiation of the members of the Anginosus group streptococci. Eur J Clin Microbiol Infect Dis 28:1123–1128PubMedCentralPubMedCrossRef
14.
go back to reference Teles C, Smith A, Ramage G, Lang S (2011) Identification of clinically relevant viridans group streptococci by phenotypic and genotypic analysis. Eur J Clin Microbiol Infect Dis 30:243–250PubMedCrossRef Teles C, Smith A, Ramage G, Lang S (2011) Identification of clinically relevant viridans group streptococci by phenotypic and genotypic analysis. Eur J Clin Microbiol Infect Dis 30:243–250PubMedCrossRef
15.
go back to reference Bizzini A, Durussel C, Bille J, Greub G, Prod’hom G (2010) Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. J Clin Microbiol 48:1549–1554PubMedCentralPubMedCrossRef Bizzini A, Durussel C, Bille J, Greub G, Prod’hom G (2010) Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory. J Clin Microbiol 48:1549–1554PubMedCentralPubMedCrossRef
16.
go back to reference Neville SA, LeCordier A, Ziochos H, Chater MJ, Gosbell IB, Maley MW, van Hal SJ (2011) Utility of matrix-assisted laser desorption ionization-time of flight mass spectrometry following introduction for routine laboratory bacterial identification. J Clin Microbiol 49:2980–2984PubMedCentralPubMedCrossRef Neville SA, LeCordier A, Ziochos H, Chater MJ, Gosbell IB, Maley MW, van Hal SJ (2011) Utility of matrix-assisted laser desorption ionization-time of flight mass spectrometry following introduction for routine laboratory bacterial identification. J Clin Microbiol 49:2980–2984PubMedCentralPubMedCrossRef
17.
go back to reference Seng P, Drancourt M, Gouriet F, La Scola B, Fournier P-E, Rolain JM, Raoult D (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49:543–551PubMedCrossRef Seng P, Drancourt M, Gouriet F, La Scola B, Fournier P-E, Rolain JM, Raoult D (2009) Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis 49:543–551PubMedCrossRef
18.
go back to reference Haanperä M, Jalava J, Huovinen P, Meurman O, Rantakokko-Jalava K (2007) Identification of alpha-hemolytic streptococci by pyrosequencing the 16S rRNA gene and by use of Vitek 2. J Clin Microbiol 45:762–770PubMedCentralPubMedCrossRef Haanperä M, Jalava J, Huovinen P, Meurman O, Rantakokko-Jalava K (2007) Identification of alpha-hemolytic streptococci by pyrosequencing the 16S rRNA gene and by use of Vitek 2. J Clin Microbiol 45:762–770PubMedCentralPubMedCrossRef
19.
go back to reference Scholz CFP, Poulsen K, Kilian M (2012) Novel molecular method for identification of Streptococcus pneumoniae applicable to clinical microbiology and 16S rRNA sequence-based microbiome studies. J Clin Microbiol 50:1968–1973PubMedCentralPubMedCrossRef Scholz CFP, Poulsen K, Kilian M (2012) Novel molecular method for identification of Streptococcus pneumoniae applicable to clinical microbiology and 16S rRNA sequence-based microbiome studies. J Clin Microbiol 50:1968–1973PubMedCentralPubMedCrossRef
20.
go back to reference Gavin PJ, Warren JR, Obias AA, Collins SM, Peterson LR (2002) Evaluation of the Vitek 2 system for rapid identification of clinical isolates of gram-negative bacilli and members of the family Streptococcaceae. Eur J Clin Microbiol Infect Dis 21:869–874PubMed Gavin PJ, Warren JR, Obias AA, Collins SM, Peterson LR (2002) Evaluation of the Vitek 2 system for rapid identification of clinical isolates of gram-negative bacilli and members of the family Streptococcaceae. Eur J Clin Microbiol Infect Dis 21:869–874PubMed
21.
go back to reference Davies AP, Reid M, Hadfield SJ, Johnston S, Mikhail J, Harris LG, Jenkinson HF, Berry N, Lewis AM, El-Bouri K, Mack D (2012) Identification of clinical isolates of α-hemolytic streptococci by 16S rRNA gene sequencing, matrix-assisted laser desorption ionization-time of flight mass spectrometry using MALDI Biotyper, and conventional phenotypic methods: a comparison. J Clin Microbiol 50:4087–4090PubMedCentralPubMedCrossRef Davies AP, Reid M, Hadfield SJ, Johnston S, Mikhail J, Harris LG, Jenkinson HF, Berry N, Lewis AM, El-Bouri K, Mack D (2012) Identification of clinical isolates of α-hemolytic streptococci by 16S rRNA gene sequencing, matrix-assisted laser desorption ionization-time of flight mass spectrometry using MALDI Biotyper, and conventional phenotypic methods: a comparison. J Clin Microbiol 50:4087–4090PubMedCentralPubMedCrossRef
22.
go back to reference Alatoom AA, Cunningham SA, Ihde SM, Mandrekar J, Patel R (2011) Comparison of direct colony method versus extraction method for identification of gram-positive cocci by use of Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 49:2868–2873PubMedCentralPubMedCrossRef Alatoom AA, Cunningham SA, Ihde SM, Mandrekar J, Patel R (2011) Comparison of direct colony method versus extraction method for identification of gram-positive cocci by use of Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 49:2868–2873PubMedCentralPubMedCrossRef
23.
go back to reference Friedrichs C, Rodloff AC, Chhatwal GS, Schellenberger W, Eschrich K (2007) Rapid identification of viridans streptococci by mass spectrometric discrimination. J Clin Microbiol 45:2392–2397PubMedCentralPubMedCrossRef Friedrichs C, Rodloff AC, Chhatwal GS, Schellenberger W, Eschrich K (2007) Rapid identification of viridans streptococci by mass spectrometric discrimination. J Clin Microbiol 45:2392–2397PubMedCentralPubMedCrossRef
24.
go back to reference Rychert J, Burnham C-AD, Bythrow M, Garner OB, Ginocchio CC, Jenneman R, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Sercia L, Westblade LF, Ferraro MJ, Branda JA (2013) Multicenter evaluation of the VITEK MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Gram-positive aerobic bacteria. J Clin Microbiol 51:2225–2231PubMedCentralPubMedCrossRef Rychert J, Burnham C-AD, Bythrow M, Garner OB, Ginocchio CC, Jenneman R, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Sercia L, Westblade LF, Ferraro MJ, Branda JA (2013) Multicenter evaluation of the VITEK MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Gram-positive aerobic bacteria. J Clin Microbiol 51:2225–2231PubMedCentralPubMedCrossRef
25.
go back to reference López Roa P, Sánchez Carrillo C, Marín M, Romero F, Cercenado E, Bouza E (2013) Value of matrix-assisted laser desorption ionization-time of flight for routine identification of viridans group streptococci causing bloodstream infections. Clin Microbiol Infect 19:438–444PubMedCrossRef López Roa P, Sánchez Carrillo C, Marín M, Romero F, Cercenado E, Bouza E (2013) Value of matrix-assisted laser desorption ionization-time of flight for routine identification of viridans group streptococci causing bloodstream infections. Clin Microbiol Infect 19:438–444PubMedCrossRef
26.
go back to reference De Bel A, Wybo I, Piérard D, Lauwers S (2010) Correct implementation of matrix-assisted laser desorption ionization-time of flight mass spectrometry in routine clinical microbiology. J Clin Microbiol 48:1991–1992PubMedCentralPubMedCrossRef De Bel A, Wybo I, Piérard D, Lauwers S (2010) Correct implementation of matrix-assisted laser desorption ionization-time of flight mass spectrometry in routine clinical microbiology. J Clin Microbiol 48:1991–1992PubMedCentralPubMedCrossRef
27.
go back to reference van Veen SQ, Claas ECJ, Kuijper EJ (2010) High-throughput identification of bacteria and yeast by matrix-assisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories. J Clin Microbiol 48:900–907PubMedCentralPubMedCrossRef van Veen SQ, Claas ECJ, Kuijper EJ (2010) High-throughput identification of bacteria and yeast by matrix-assisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratories. J Clin Microbiol 48:900–907PubMedCentralPubMedCrossRef
28.
go back to reference Martiny D, Busson L, Wybo I, El Haj RA, Dediste A, Vandenberg O (2012) Comparison of the Microflex LT and Vitek MS systems for routine identification of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 50:1313–1325PubMedCentralPubMedCrossRef Martiny D, Busson L, Wybo I, El Haj RA, Dediste A, Vandenberg O (2012) Comparison of the Microflex LT and Vitek MS systems for routine identification of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 50:1313–1325PubMedCentralPubMedCrossRef
29.
go back to reference Dubois D, Segonds C, Prere M-F, Marty N, Oswald E (2013) Identification of clinical Streptococcus pneumoniae isolates among other alpha and nonhemolytic streptococci by use of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system. J Clin Microbiol 51:1861–1867PubMedCentralPubMedCrossRef Dubois D, Segonds C, Prere M-F, Marty N, Oswald E (2013) Identification of clinical Streptococcus pneumoniae isolates among other alpha and nonhemolytic streptococci by use of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system. J Clin Microbiol 51:1861–1867PubMedCentralPubMedCrossRef
30.
go back to reference Branda JA, Markham RP, Garner CD, Rychert JA, Ferraro MJ (2013) Performance of the Vitek MS v2.0 system in distinguishing Streptococcus pneumoniae from nonpneumococcal species of the Streptococcus mitis group. J Clin Microbiol 51:3079–3082PubMedCentralPubMedCrossRef Branda JA, Markham RP, Garner CD, Rychert JA, Ferraro MJ (2013) Performance of the Vitek MS v2.0 system in distinguishing Streptococcus pneumoniae from nonpneumococcal species of the Streptococcus mitis group. J Clin Microbiol 51:3079–3082PubMedCentralPubMedCrossRef
31.
go back to reference Wester CW, Ariga D, Nathan C, Rice TW, Pulvirenti J, Patel R, Kocka F, Ortiz J, Weinstein RA (2002) Possible overestimation of penicillin resistant Streptococcus pneumoniae colonization rates due to misidentification of oropharyngeal streptococci. Diagn Microbiol Infect Dis 42:263–268PubMedCrossRef Wester CW, Ariga D, Nathan C, Rice TW, Pulvirenti J, Patel R, Kocka F, Ortiz J, Weinstein RA (2002) Possible overestimation of penicillin resistant Streptococcus pneumoniae colonization rates due to misidentification of oropharyngeal streptococci. Diagn Microbiol Infect Dis 42:263–268PubMedCrossRef
32.
33.
go back to reference Werno AM, Christner M, Anderson TP, Murdoch DR (2012) Differentiation of Streptococcus pneumoniae from nonpneumococcal streptococci of the Streptococcus mitis group by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 50:2863–2867PubMedCentralPubMedCrossRef Werno AM, Christner M, Anderson TP, Murdoch DR (2012) Differentiation of Streptococcus pneumoniae from nonpneumococcal streptococci of the Streptococcus mitis group by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol 50:2863–2867PubMedCentralPubMedCrossRef
34.
go back to reference Ikryannikova LN, Filimonova AV, Malakhova MV, Savinova T, Filimonova O, Ilina EN, Dubovickaya VA, Sidorenko SV, Govorun VM (2013) Discrimination between Streptococcus pneumoniae and Streptococcus mitis based on sorting of their MALDI mass spectra. Clin Microbiol Infect 19:1066–1071. doi:10.1111/1469-0691.12113, Epub ahead of print Ikryannikova LN, Filimonova AV, Malakhova MV, Savinova T, Filimonova O, Ilina EN, Dubovickaya VA, Sidorenko SV, Govorun VM (2013) Discrimination between Streptococcus pneumoniae and Streptococcus mitis based on sorting of their MALDI mass spectra. Clin Microbiol Infect 19:1066–1071. doi:10.​1111/​1469-0691.​12113, Epub ahead of print
Metadata
Title
Evaluation of two matrix-assisted laser desorption ionization–time of flight mass spectrometry systems for identification of viridans group streptococci
Authors
P. Kärpänoja
I. Harju
K. Rantakokko-Jalava
M. Haanperä
H. Sarkkinen
Publication date
01-05-2014
Publisher
Springer Berlin Heidelberg
Published in
European Journal of Clinical Microbiology & Infectious Diseases / Issue 5/2014
Print ISSN: 0934-9723
Electronic ISSN: 1435-4373
DOI
https://doi.org/10.1007/s10096-013-2012-8

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