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Published in: Archives of Virology 8/2019

01-08-2019 | Annotated Sequence Record

Genomic characterization of four novel Staphylococcus myoviruses

Authors: Joseph Michael Ochieng’ Oduor, Saija Kiljunen, Ermir Kadija, Marianne W. Mureithi, Atunga Nyachieo, Mikael Skurnik

Published in: Archives of Virology | Issue 8/2019

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Abstract

We report here the annotation of the complete genomes of four novel lytic Staphylococcus phages; Stab20, Stab21, Stab22 and Stab23. These phages have double-stranded DNA genomes ranging between 153,338 and 155,962 bp in size with terminal repeats of 10,814–12,304 bp. The genome analysis suggests that they represent new phage species within the genus Kayvirus in the subfamily Twortvirinae of the family Herelleviridae.
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Literature
1.
go back to reference Schooley RT et al (2017) Development and use of personalized bacteriophage-based therapeutic cocktails to treat a patient with a disseminated resistant Acinetobacter baumannii infection. Antimicrob Agents Chemother 61(10):e00954–17CrossRefPubMedPubMedCentral Schooley RT et al (2017) Development and use of personalized bacteriophage-based therapeutic cocktails to treat a patient with a disseminated resistant Acinetobacter baumannii infection. Antimicrob Agents Chemother 61(10):e00954–17CrossRefPubMedPubMedCentral
2.
go back to reference Labrie SJ, Samson JE, Moineau S (2010) Bacteriophage resistance mechanisms. Nat Rev Microbiol 8(5):317–327CrossRefPubMed Labrie SJ, Samson JE, Moineau S (2010) Bacteriophage resistance mechanisms. Nat Rev Microbiol 8(5):317–327CrossRefPubMed
3.
go back to reference Wittebole X, De Roock S, Opal SM (2014) A historical overview of bacteriophage therapy as an alternative to antibiotics for the treatment of bacterial pathogens. Virulence 5(1):226–235CrossRefPubMed Wittebole X, De Roock S, Opal SM (2014) A historical overview of bacteriophage therapy as an alternative to antibiotics for the treatment of bacterial pathogens. Virulence 5(1):226–235CrossRefPubMed
7.
go back to reference Garneau JR, Depardieu F, Fortier L-C, Bikard D, Monot M (2017) PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data. Sci Rep 7(1):8292CrossRefPubMedPubMedCentral Garneau JR, Depardieu F, Fortier L-C, Bikard D, Monot M (2017) PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data. Sci Rep 7(1):8292CrossRefPubMedPubMedCentral
9.
go back to reference Carver T et al (2008) Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinform Oxf Engl 24(23):2672–2676CrossRef Carver T et al (2008) Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinform Oxf Engl 24(23):2672–2676CrossRef
11.
go back to reference Zimmermann L et al (2018) A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core. J Mol Biol 430(15):2237–2243CrossRefPubMed Zimmermann L et al (2018) A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core. J Mol Biol 430(15):2237–2243CrossRefPubMed
13.
15.
16.
go back to reference Lowe TM, Chan PP (2016) tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res 44(Web Server issue):W54–W57CrossRefPubMedPubMedCentral Lowe TM, Chan PP (2016) tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes. Nucleic Acids Res 44(Web Server issue):W54–W57CrossRefPubMedPubMedCentral
17.
go back to reference Meier-Kolthoff JP, Goeker M (2017) VICTOR: genome-based phylogeny and classification of prokaryotic viruses. bioRxiv, p 107862 Meier-Kolthoff JP, Goeker M (2017) VICTOR: genome-based phylogeny and classification of prokaryotic viruses. bioRxiv, p 107862
18.
Metadata
Title
Genomic characterization of four novel Staphylococcus myoviruses
Authors
Joseph Michael Ochieng’ Oduor
Saija Kiljunen
Ermir Kadija
Marianne W. Mureithi
Atunga Nyachieo
Mikael Skurnik
Publication date
01-08-2019
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 8/2019
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-019-04267-0

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