Top

Published in:

01-10-2018 | Annotated Sequence Record

Complete genome sequence and phylogenetic analysis of spring viremia of carp virus isolated from leather carp (Cyprinus carpio nudus) in Korea in 2016

Authors: Myoung-Jin Kim, Seongdo Lee, G. I. Godahewa, Jee Youn Hwang, Jung Soo Seo, Seong Don Hwang, Jehee Lee

Published in: Archives of Virology | Issue 10/2018

Abstract

Spring viremia of carp (SVC) is listed as a notifiable viral disease by the World Organization for Animal Health (OIE). In 2016, the first official SVC outbreak was detected in the city of Gyeongsan, Korea. The present study reports the first complete genome analysis of SVC virus (SVCV, ADC-SVC2016-5) isolated from leather carp (Cyprinus carpio nudus). The results revealed that ADC-SVC2016-5 has a 11,029-bp genome containing five genes: N, P, M, G, and L. Phylogenetic analysis indicated that ADC-SVC2016-5 (accession number MG663512), isolated from leather carp, was closely related to genogroup Ia isolates of the Asian clade. This report provides additional information for studying the molecular epidemiology and evolution of spring viremia of carp virus.

Taylor NGH, Peeler EJ, Denham KL et al (2013) Spring viraemia of carp (SVC) in the UK: the road to freedom. Prev Vet Med 111:156–164. https://doi.org/10.1016/j.prevetmed.2013.03.004 CrossRefPubMed

Emmenegger EJ, Sanders GE, Conway CM et al (2016) Experimental infection of six North American fish species with the North Carolina strain of spring Viremia of Carp Virus. Aquaculture 450:273–282. https://doi.org/10.1016/j.aquaculture.2015.07.007 CrossRef

OIE (2016) Chapter 2.3.9. Spring viraemia of carp. OIE Manual of Diagnostic Tests for Aquatic Animals. http://www.oie.int/en/standard-setting/aquatic-manual/access-online/

Ashraf U, Lu Y, Lin L et al (2016) Spring viraemia of carp virus: Recent advances. J Gen Virol 97:1037–1051. https://doi.org/10.1099/jgv.0.000436 CrossRefPubMed

Teng Y, Liu H, Lv JQ et al (2007) Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China. Arch Virol 152:1457–1465. https://doi.org/10.1007/s00705-007-0971-8 CrossRefPubMed

Misk E, Garver K, Nagy E et al (2016) Pathogenesis of spring viremia of carp virus in emerald shiner Notropis atherinoides Rafinesque, fathead minnow Pimephales promelas Rafinesque and white sucker Catostomus commersonii (Lacepede). J Fish Dis 39:729–739. https://doi.org/10.1111/jfd.12405 CrossRefPubMed

Zhang NZ, Zhang LF, Jiang YN et al (2009) Molecular analysis of spring viraemia of carp virus in china: A fatal aquatic viral disease that might spread in East Asian. PLoS One. https://doi.org/10.1371/journal.pone.0006337 CrossRefPubMedPubMedCentral

Stone DM, Ahne W, Denham KL et al (2003) Nucleotide sequence analysis of the glycoprotein gene of putative spring viraemia of carp virus and pike fry rhabdovirus isolates reveals four genogroups. Dis Aquat Organ 53:203–210. https://doi.org/10.3354/dao053203 CrossRefPubMed

Title: Complete genome sequence and phylogenetic analysis of spring viremia of carp virus isolated from leather carp (Cyprinus carpio nudus) in Korea in 2016
Authors: Myoung-Jin Kim
Seongdo Lee
G. I. Godahewa
Jee Youn Hwang
Jung Soo Seo
Seong Don Hwang
Jehee Lee
Publication date: 01-10-2018
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 10/2018
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-018-3919-2

ACC 2024 Congress Coverage

Heart Failure Video

At a glance: The ONWARDS insulin icodec trials

Springer Medicine

Complete genome sequence and phylogenetic analysis of spring viremia of carp virus isolated from leather carp (Cyprinus carpio nudus) in Korea in 2016

Abstract

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

Incentivised to exercise

New intervention for STEMI-related cardiogenic shock

» View more highlights on the ACC 2024 congress hub page

At a glance: The ONWARDS insulin icodec trials

Springer Medicine

Abstract

Please log in to get access to this content

Other articles of this Issue 10/2018

Biological characterization of wild-bird-origin avian avulavirus 1 and efficacy of currently applied vaccines against potential infection in commercial poultry

Molecular characterization and detection of a novel vitivirus infecting blackberry

Clinical evaluation of a panel of multiplex quantitative real-time reverse transcription polymerase chain reaction assays for the detection of 16 respiratory viruses associated with community-acquired pneumonia

Humoral immunity to influenza in an at-risk population and severe influenza cases in Russia in 2016–2017

High frequency of Polio-like Enterovirus C strains with differential clustering of CVA-13 and EV-C99 subgenotypes in a cohort of Malawian children

Association of CXCR2 genotype variations with HCV clearance in a Chinese population

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

Incentivised to exercise

New intervention for STEMI-related cardiogenic shock

» View more highlights on the ACC 2024 congress hub page