Top

Published in:

01-09-2018 | Annotated Sequence Record

Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant

Authors: Igor Koloniuk, Jana Fránová, Tatiana Sarkisova, Jaroslava Přibylová

Published in: Archives of Virology | Issue 9/2018

Abstract

Strawberry crinkle disease is one of the major diseases that threatens strawberry production. Although the biological properties of the agent, strawberry crinkle virus (SCV), have been thoroughly investigated, its complete genome sequence has never been published. Existing RT-PCR-based detection relies on a partial sequence of the L protein gene, presumably the least expressed viral gene. Here, we present complete sequences of two divergent SCV isolates co-infecting a single plant, Fragaria x ananassa cv. Čačanská raná.

Available only for authorised users

Zeller SM, Vaughan EK (1932) Crinkle disease of strawberry. Phytopathology 22:709–713

Posthuma KI, Adams AN, Hong Y (2000) Strawberry crinkle virus, a cytorhabdovirus needing more attention from virologists. Mol Plant Pathol 1:331–336. https://doi.org/10.1046/j.1364-3703.2000.00041.x CrossRefPubMed

Vaughan EK (1933) Transmission of the crinkle disease of strawberry. Phytopathology 23:738–740

Sylvester ES, Richardson J, Frazier NW (1974) Serial passage of strawberry crinkle virus in the aphid Chaetosiphon jacobi. Virology 59:301–306CrossRefPubMed

Walker PJ, Blasdell KR, Calisher CH et al (2018) ICTV virus taxonomy profile: Rhabdoviridae. J Gen Virol 99:447–448. https://doi.org/10.1099/jgv.0.001020 CrossRefPubMed

Schoen CD, Limpens W, Moller I et al (2004) The complete genomic sequence of strawberry crinkle virus, a member of the rhabdoviridae. Acta Hortic 656:45–50CrossRef

Martin RR, Tzanetakis IE (2013) High risk strawberry viruses by region in the united states and canada: implications for certification, nurseries, and fruit production. Plant Dis 97:1358–1362. https://doi.org/10.1094/PDIS-09-12-0842-RE CrossRef

Koloniuk I, Fránová J, Sarkisova T et al (2018) Identification and molecular characterization of a novel varicosa-like virus from red clover. Arch Virol. https://doi.org/10.1007/s00705-018-3838-2 CrossRefPubMed

Bejerman N, Giolitti F, de Breuil S et al (2015) Complete genome sequence and integrated protein localization and interaction map for alfalfa dwarf virus, which combines properties of both cytoplasmic and nuclear plant rhabdoviruses. Virology 483:275–283. https://doi.org/10.1016/j.virol.2015.05.001 CrossRefPubMed

10.

Perotto MC, Luciani C, Celli MG et al (2014) First report of Strawberry crinkle virus in Argentina. New Dis Rep 30:5. https://doi.org/10.5197/j.2044-0588.2014.030.005 CrossRef

11.

Klerks MM, Lindner JL, Vašková D et al (2004) Detection and tentative grouping of Strawberry crinkle virus isolates. Eur J Plant Pathol 110:45–52. https://doi.org/10.1023/B:EJPP.0000010134.06283.38 CrossRef

12.

Enzmann PJ, Castric J, Bovo G et al (2010) Evolution of infectious hematopoietic necrosis virus (IHNV), a fish rhabdovirus, in Europe over 20 years: implications for control. Dis Aquat Org 89:9–15. https://doi.org/10.3354/dao02182 CrossRefPubMed

13.

Thompson TM, Batts WN, Faisal M et al (2011) Emergence of viral hemorrhagic septicemia virus in the North American Great Lakes region is -associated with low viral genetic diversity. Dis Aquat Org 96:29–43. https://doi.org/10.3354/dao02362 CrossRefPubMed

14.

Dereeper A, Guignon V, Blanc G et al (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36:W465–W469. https://doi.org/10.1093/nar/gkn180 CrossRefPubMedPubMedCentral

15.

Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454 PubMedCrossRef

Title: Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant
Authors: Igor Koloniuk
Jana Fránová
Tatiana Sarkisova
Jaroslava Přibylová
Publication date: 01-09-2018
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 9/2018
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-018-3860-4

ACC 2024 Congress Coverage

Heart Failure Video

At a glance: The ONWARDS insulin icodec trials

Springer Medicine

Complete genome sequences of two divergent isolates of strawberry crinkle virus coinfecting a single strawberry plant

Abstract

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

Incentivised to exercise

New intervention for STEMI-related cardiogenic shock

» View more highlights on the ACC 2024 congress hub page

At a glance: The ONWARDS insulin icodec trials

Springer Medicine

Abstract

Please log in to get access to this content

Other articles of this Issue 9/2018

Genome sequence of a novel partitivirus identified from the oomycete Pythium nunn

New variants of porcine epidemic diarrhea virus with large deletions in the spike protein, identified in the United States, 2016-2017

Equine infectious anemia virus in naturally infected horses from the Brazilian Pantanal

Development of a TaqMan MGB RT-PCR assay for the detection of type A and subtype H10 avian influenza viruses

Evolutionary analyses of Sindbis virus strains isolated from mosquitoes in Kenya

Full-length and defective enterovirus G genomes with distinct torovirus protease insertions are highly prevalent on a Chinese pig farm

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

Incentivised to exercise

New intervention for STEMI-related cardiogenic shock

» View more highlights on the ACC 2024 congress hub page