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01-04-2017 | Annotated Sequence Record

Genomic characterization of a bovine viral diarrhea virus subtype 1i in Brazil

Authors: Ana Cristina S. Mósena, Matheus N. Weber, Samuel P. Cibulski, Simone Silveira, Mariana S. Silva, Fabiana Q. Mayer, Cláudio W. Canal

Published in: Archives of Virology | Issue 4/2017

Abstract

Bovine viral diarrhea virus 1 (BVDV-1) belongs to the genus Pestivirus within the family Flaviviridae. Based on the 5’ untranslated region (UTR) sequence, BVDV-1 can be divided into at least 17 subtypes (1a though 1q). BVDV-1i is an uncommon subtype that has been reported in the United Kingdom and Uruguay. Here, we report the complete genome sequence of the first subtype 1i BVDV-1 (strain ACM/BR/2016) isolated from cattle in southern Brazil. The genome is 12,231 nt in length and contains a single ORF that encodes a polyprotein of 3,896 amino acids, flanked by 5’ and 3’UTRs of 325 and 220 nt, respectively. Phylogenetic inferences based on the whole genome, the 5’UTR, and the N^pro region showed that strain ACM/BR/2016 is closely related to previously characterized BVDV-1i members. Its 5’UTR shares the highest nucleotide identity (90.5%) with BVDV-1i strains from United Kingdom, and its N^pro is most closely related to that of a Uruguayan strain (90.6%). To the best of our knowledge, this is the first BVDV-1i strain from which the whole genome has been completely sequenced and characterized. The complete genome of a BVDV-1i will help future studies on pestivirus evolution and heterogeneity.

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Title: Genomic characterization of a bovine viral diarrhea virus subtype 1i in Brazil
Authors: Ana Cristina S. Mósena
Matheus N. Weber
Samuel P. Cibulski
Simone Silveira
Mariana S. Silva
Fabiana Q. Mayer
Cláudio W. Canal
Publication date: 01-04-2017
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 4/2017
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-016-3199-7

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