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Published in: Archives of Virology 2/2017

01-02-2017 | Brief Report

Biological and molecular characterization of a putative new potexvirus infecting Senna occidentalis

Authors: Jorge A. M. Rezende, Viviana M. Camelo-García, Sónia C. S. Andrade, José E. Buriolla, Elliot W. Kitajima, Ligia M. L. Duarte

Published in: Archives of Virology | Issue 2/2017

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Abstract

In this work, we report the complete genome sequence of, production of polyclonal antibodies against, and development of biological assays for a putative new potexvirus, named senna mosaic virus (SenMV), found infecting Senna occidentalis in the state of São Paulo, Brazil. The complete genome sequence of SenMV comprises 6775 nucleotides excluding the poly(A) tail. The genome organization is similar to those of other potexviruses, with five open reading frames coding for RNA-dependent RNA polymerase (RdRp), the triple gene block (TGB 1, 2, and 3) proteins, and coat protein (CP). The virus was transmitted to S. occidentalis by mechanical inoculation and trimming scissors, but not by seeds.
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Literature
1.
go back to reference Adams MJ, Candresse T, Hammond J, Kreuze JF, Martelli GP, Namba S, Pearson MN, Ryu KH, Vaira AM (2012) Alphaflexiviridae. In: King AMQ, Adams MJ, Carstens EB (eds) Virus taxonomy: 9th Report of the International Committee on the Taxonomy of Viruses. Elsevier, San Diego, pp 904–919 Adams MJ, Candresse T, Hammond J, Kreuze JF, Martelli GP, Namba S, Pearson MN, Ryu KH, Vaira AM (2012) Alphaflexiviridae. In: King AMQ, Adams MJ, Carstens EB (eds) Virus taxonomy: 9th Report of the International Committee on the Taxonomy of Viruses. Elsevier, San Diego, pp 904–919
2.
go back to reference Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Evol 215:403–410 Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Evol 215:403–410
3.
go back to reference Bancroft JB, Rouleau M, Johnston R, Prins L, Mackie GA (1991) The entire nucleotide sequence of foxtail mosaic virus RNA. J Gen Virol 72:2173–2181CrossRefPubMed Bancroft JB, Rouleau M, Johnston R, Prins L, Mackie GA (1991) The entire nucleotide sequence of foxtail mosaic virus RNA. J Gen Virol 72:2173–2181CrossRefPubMed
4.
go back to reference Barros CSL, Ilha MRS, Bezerra PS Jr, Langohr IM, Kommers GD (1999) Intoxicação por Senna occidentalis (Leg. Caesalpinoideae) em bovinos em pastoreio. Pesq Vet Bras 19:68–70CrossRef Barros CSL, Ilha MRS, Bezerra PS Jr, Langohr IM, Kommers GD (1999) Intoxicação por Senna occidentalis (Leg. Caesalpinoideae) em bovinos em pastoreio. Pesq Vet Bras 19:68–70CrossRef
5.
go back to reference Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinform 10:421CrossRef Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL (2009) BLAST+: architecture and applications. BMC Bioinform 10:421CrossRef
6.
go back to reference Diaz-Ruiz JR, Feldman JM (1990) Crystalline structures associated with the infection of the potexvirus Argentine plantago virus (APlaV). J Phytopathol 129:187–192CrossRef Diaz-Ruiz JR, Feldman JM (1990) Crystalline structures associated with the infection of the potexvirus Argentine plantago virus (APlaV). J Phytopathol 129:187–192CrossRef
7.
go back to reference Geering ADW, Thomas JE (1999) Characterization of a virus from Australia that is closely related with papaya mosaic potexvirus. Arch Virol 144:577–592CrossRefPubMed Geering ADW, Thomas JE (1999) Characterization of a virus from Australia that is closely related with papaya mosaic potexvirus. Arch Virol 144:577–592CrossRefPubMed
8.
go back to reference Hammond J, Reinsel MD, Marcoon-Longo CJ (2006) Identification and full sequence of an isolate of Alternanthera mosaic potexvirus infecting Phlox stolonifera. Arch Virol 151:477–493CrossRefPubMed Hammond J, Reinsel MD, Marcoon-Longo CJ (2006) Identification and full sequence of an isolate of Alternanthera mosaic potexvirus infecting Phlox stolonifera. Arch Virol 151:477–493CrossRefPubMed
9.
go back to reference Hueza IM, Latorre AO, Raspantini PCF, Raspantini LER, Mariano-Souza DP, Guerra JL, Górniak SL (2007) Effect of Senna occidentalis seeds on immunity in broiler chickens. J Vet Méd A 54:179–185CrossRef Hueza IM, Latorre AO, Raspantini PCF, Raspantini LER, Mariano-Souza DP, Guerra JL, Górniak SL (2007) Effect of Senna occidentalis seeds on immunity in broiler chickens. J Vet Méd A 54:179–185CrossRef
11.
go back to reference Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780CrossRefPubMedPubMedCentral Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780CrossRefPubMedPubMedCentral
12.
go back to reference Kim OK, Mizutani T, Soe K, Lee KW, Natsuaki KT (2010) Characterization of Lagenaria mild mosaic virus, a new Potexvirus from bottle gourd in Myanmar. Plant Dis 94:1225–1230CrossRef Kim OK, Mizutani T, Soe K, Lee KW, Natsuaki KT (2010) Characterization of Lagenaria mild mosaic virus, a new Potexvirus from bottle gourd in Myanmar. Plant Dis 94:1225–1230CrossRef
13.
go back to reference Kitajima EW, Lin MT, Cupertino FP, Costa CL (1977) Electron microscopy of bamboo mosaic virus-infected leaf tissues. J Phytopathol 90:180–183CrossRef Kitajima EW, Lin MT, Cupertino FP, Costa CL (1977) Electron microscopy of bamboo mosaic virus-infected leaf tissues. J Phytopathol 90:180–183CrossRef
14.
go back to reference Koenig R, Lesemann DE (1978) Potexvirus group. Description of plant viruses no. 200. CMI/AAB, Kew Koenig R, Lesemann DE (1978) Potexvirus group. Description of plant viruses no. 200. CMI/AAB, Kew
15.
go back to reference Lin NS, Chen CC (1991) Association of bamboo mosaic virus (BoMV) and BoMV-specific electron-dense crystalline bodies with chloroplasts. Phytopathology 81:1551–1556CrossRef Lin NS, Chen CC (1991) Association of bamboo mosaic virus (BoMV) and BoMV-specific electron-dense crystalline bodies with chloroplasts. Phytopathology 81:1551–1556CrossRef
16.
go back to reference Lorenzi H (2008) Plantas daninhas do Brasil, 4ª edição. Instituto Plantarum de estudos da flora Ltda, Brasil Lorenzi H (2008) Plantas daninhas do Brasil, 4ª edição. Instituto Plantarum de estudos da flora Ltda, Brasil
17.
go back to reference Mota LDC, Della Vecchia MGS, Gioria R, Kitajima EW, Rezende JAM, Camargo LEA, Amorim L (2004) Pfaffia mosaic virus: a new potyvirus found infecting Pfaffia glomerata in Brazil. Plant Pathol 53:368–373CrossRef Mota LDC, Della Vecchia MGS, Gioria R, Kitajima EW, Rezende JAM, Camargo LEA, Amorim L (2004) Pfaffia mosaic virus: a new potyvirus found infecting Pfaffia glomerata in Brazil. Plant Pathol 53:368–373CrossRef
18.
go back to reference Mowat WP, Dawson S (1987) Detection of plant viruses by ELISA using crude sap extracts and unfractionated antisera. J Virol Methods 15:233–247CrossRefPubMed Mowat WP, Dawson S (1987) Detection of plant viruses by ELISA using crude sap extracts and unfractionated antisera. J Virol Methods 15:233–247CrossRefPubMed
19.
go back to reference Rivas EB, Duarte LM, Alexandre MAV, Galleti SR, Harakava R, Fernandes EC (2005) Caladium virus X, a new potexvirus from Caladium bicolor (Araceae). J Plant Pathol 87:109–114 Rivas EB, Duarte LM, Alexandre MAV, Galleti SR, Harakava R, Fernandes EC (2005) Caladium virus X, a new potexvirus from Caladium bicolor (Araceae). J Plant Pathol 87:109–114
20.
go back to reference Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690CrossRefPubMed Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690CrossRefPubMed
21.
go back to reference Verma VS, Niazi FR (1974) Negro coffee mosaic virus. Z Pflkrankh Pflpath Pflschutz 81:608 Verma VS, Niazi FR (1974) Negro coffee mosaic virus. Z Pflkrankh Pflpath Pflschutz 81:608
22.
go back to reference White KA, Bancroft JB, Mackie GA (1992) Mutagenesis of a hexanucleotide sequence conserved in potexvirus RNAs. Virology 189:817–820CrossRefPubMed White KA, Bancroft JB, Mackie GA (1992) Mutagenesis of a hexanucleotide sequence conserved in potexvirus RNAs. Virology 189:817–820CrossRefPubMed
23.
go back to reference Xu H, Leclere D, Leung B, AbouHaidar MG (1994) The entire nucleotide sequence and genomic organization of potato aucuba mosaic potexvirus. Arch Virol 135:461–469CrossRefPubMed Xu H, Leclere D, Leung B, AbouHaidar MG (1994) The entire nucleotide sequence and genomic organization of potato aucuba mosaic potexvirus. Arch Virol 135:461–469CrossRefPubMed
24.
go back to reference Yang X, Charlebois P, Gnerre S, Coole MG, Lennon NJ, Levin JZ, Qu J, Ryan EM, Zody MC, Henn MR (2012) De novo assembly of highly diverse viral populations. BMC Genomics 13:475CrossRefPubMedPubMedCentral Yang X, Charlebois P, Gnerre S, Coole MG, Lennon NJ, Levin JZ, Qu J, Ryan EM, Zody MC, Henn MR (2012) De novo assembly of highly diverse viral populations. BMC Genomics 13:475CrossRefPubMedPubMedCentral
Metadata
Title
Biological and molecular characterization of a putative new potexvirus infecting Senna occidentalis
Authors
Jorge A. M. Rezende
Viviana M. Camelo-García
Sónia C. S. Andrade
José E. Buriolla
Elliot W. Kitajima
Ligia M. L. Duarte
Publication date
01-02-2017
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 2/2017
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-016-3114-2

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