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Published in: Archives of Virology 3/2016

01-03-2016 | Rapid Communication

Giant viruses of the Kutch Desert

Authors: Csaba Kerepesi, Vince Grolmusz

Published in: Archives of Virology | Issue 3/2016

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Abstract

The Kutch Desert (Great Rann of Kutch, Gujarat, India) is a unique ecosystem: in the larger part of the year it is a hot, salty desert that is flooded regularly in the Indian monsoon season. In the dry season, the crystallized salt deposits form the “white desert” in large regions. The first metagenomic analysis of the soil samples of Kutch was published in 2013, and the data were deposited in the NCBI Sequence Read Archive. At the same time, the sequences were analyzed phylogenetically for prokaryotes, especially for bacteria. In the present work, we identified DNA sequences of recently discovered giant viruses in the soil samples from the Kutch Desert. Since most giant viruses have been discovered in biofilms in industrial cooling towers, ocean water, and freshwater ponds, we were surprised to find their DNA sequences in soil samples from a seasonally very hot and arid, salty environment.
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Literature
1.
go back to reference Abergel C, Legendre M, Claverie J-M (2015) The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol Rev 39(6):779–796CrossRefPubMed Abergel C, Legendre M, Claverie J-M (2015) The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol Rev 39(6):779–796CrossRefPubMed
2.
go back to reference Arslan D, Legendre M, Seltzer V, Abergel C, Claverie J-M (2011) Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci USA 108(42):17486–17491PubMedCentralCrossRefPubMed Arslan D, Legendre M, Seltzer V, Abergel C, Claverie J-M (2011) Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci USA 108(42):17486–17491PubMedCentralCrossRefPubMed
3.
go back to reference Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, Scola BL, Koonin EV, Raoult D (2009) Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci USA 106(51):21848–21853PubMedCentralCrossRefPubMed Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, Scola BL, Koonin EV, Raoult D (2009) Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci USA 106(51):21848–21853PubMedCentralCrossRefPubMed
4.
go back to reference Campos RK, Boratto PV, Assis FL, Aguiar ERGR, Silva LCF, Albarnaz JD, Dornas FP, Trindade GS, Ferreira PP, Marques JT, Robert C, Raoult D, Kroon EG, La Scola B, Abrahão JS (2014) Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon. Virol J 11:95PubMedCentralCrossRefPubMed Campos RK, Boratto PV, Assis FL, Aguiar ERGR, Silva LCF, Albarnaz JD, Dornas FP, Trindade GS, Ferreira PP, Marques JT, Robert C, Raoult D, Kroon EG, La Scola B, Abrahão JS (2014) Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon. Virol J 11:95PubMedCentralCrossRefPubMed
5.
go back to reference Colson P, Yutin N, Shabalina SA, Robert C, Fournous G, Scola BL, Raoult D, Koonin EV (2011) Viruses with more than 1,000 genes: Mamavirus, a new Acanthamoeba polyphaga mimivirus strain, and reannotation of Mimivirus genes. Genome Biol Evol 3:737–742PubMedCentralCrossRefPubMed Colson P, Yutin N, Shabalina SA, Robert C, Fournous G, Scola BL, Raoult D, Koonin EV (2011) Viruses with more than 1,000 genes: Mamavirus, a new Acanthamoeba polyphaga mimivirus strain, and reannotation of Mimivirus genes. Genome Biol Evol 3:737–742PubMedCentralCrossRefPubMed
6.
go back to reference Fischer MG, Allen MJ, Wilson WH, Suttle CA (2010) Giant virus with a remarkable complement of genes infects marine zooplankton. Proc Natl Acad Sci USA 107(45):19508–19513PubMedCentralCrossRefPubMed Fischer MG, Allen MJ, Wilson WH, Suttle CA (2010) Giant virus with a remarkable complement of genes infects marine zooplankton. Proc Natl Acad Sci USA 107(45):19508–19513PubMedCentralCrossRefPubMed
7.
go back to reference Garza DR, Suttle CA (1995) Large double-stranded DNA viruses which cause the lysis of a marine heterotrophic nanoflagellate (Bodo sp.) occur in natural marine viral communities. Aquat Microb Ecol 9(3):203–210CrossRef Garza DR, Suttle CA (1995) Large double-stranded DNA viruses which cause the lysis of a marine heterotrophic nanoflagellate (Bodo sp.) occur in natural marine viral communities. Aquat Microb Ecol 9(3):203–210CrossRef
9.
go back to reference Kerepesi C, Grolmusz V (2015) The "Giant Virus Finder" Discovers an abundance of giant viruses in the Antarctic dry valleys. arXiv:1503.05575 Kerepesi C, Grolmusz V (2015) The "Giant Virus Finder" Discovers an abundance of giant viruses in the Antarctic dry valleys. arXiv:​1503.​05575
10.
go back to reference La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie J-M, Raoult D (2003) A giant virus in amoebae. Science 299(5615):2033CrossRefPubMed La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie J-M, Raoult D (2003) A giant virus in amoebae. Science 299(5615):2033CrossRefPubMed
11.
go back to reference Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie J-M (2014) Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci USA 111(11):4274–4279PubMedCentralCrossRefPubMed Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie J-M (2014) Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci USA 111(11):4274–4279PubMedCentralCrossRefPubMed
12.
go back to reference Pandit AS, Joshi MN, Bhargava P, Ayachit GN, Shaikh IM, Saiyed ZM, Saxena AK, Bagatharia SB (2014) Metagenomes from the saline desert of Kutch. Genome Announc 2(3) Pandit AS, Joshi MN, Bhargava P, Ayachit GN, Shaikh IM, Saiyed ZM, Saxena AK, Bagatharia SB (2014) Metagenomes from the saline desert of Kutch. Genome Announc 2(3)
13.
go back to reference Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie J-M, Abergel C (2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341(6143):281–286CrossRefPubMed Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie J-M, Abergel C (2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341(6143):281–286CrossRefPubMed
14.
go back to reference Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, Scola BL, Suzan M, Claverie J-M (2004) The 1.2-megabase genome sequence of Mimivirus. Science 306(5700):1344–1350CrossRefPubMed Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, Scola BL, Suzan M, Claverie J-M (2004) The 1.2-megabase genome sequence of Mimivirus. Science 306(5700):1344–1350CrossRefPubMed
15.
go back to reference Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers Y-H, Smith HO (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304(5667):66–74CrossRefPubMed Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers Y-H, Smith HO (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304(5667):66–74CrossRefPubMed
16.
go back to reference Yau S, Lauro FM, DeMaere MZ, Brown MV, Thomas T, Raftery MJ, Andrews-Pfannkoch C, Lewis M, Hoffman JM, Gibson JA, Cavicchioli R (2011) Virophage control of Antarctic algal host-virus dynamics. Proc Natl Acad Sci USA 108(15):6163–6168PubMedCentralCrossRefPubMed Yau S, Lauro FM, DeMaere MZ, Brown MV, Thomas T, Raftery MJ, Andrews-Pfannkoch C, Lewis M, Hoffman JM, Gibson JA, Cavicchioli R (2011) Virophage control of Antarctic algal host-virus dynamics. Proc Natl Acad Sci USA 108(15):6163–6168PubMedCentralCrossRefPubMed
Metadata
Title
Giant viruses of the Kutch Desert
Authors
Csaba Kerepesi
Vince Grolmusz
Publication date
01-03-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 3/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-015-2720-8

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