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Published in: Archives of Virology 2/2016

01-02-2016 | Brief Report

Occurrence and characterization of plum pox virus strain D isolates from European Russia and Crimea

Authors: Sergei Chirkov, Peter Ivanov, Anna Sheveleva, Anna Kudryavtseva, Yuri Prikhodko, Irina Mitrofanova

Published in: Archives of Virology | Issue 2/2016

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Abstract

Numerous plum pox virus (PPV) strain D isolates have been found in geographically distant regions of European Russia and the Crimean peninsula on different stone fruit hosts. Phylogenetic analysis of their partial and complete genomes suggests multiple introductions of PPV-D into Russia. Distinct natural isolates from Prunus tomentosa were found to bear unique amino acid substitutions in the N-terminus of the coat protein (CP) that may contribute to the adaptation of PPV-D to this host. Serological analysis using the PPV-D-specific monoclonal antibody 4DG5 provided further evidence that mutations at positions 58 and 59 of the CP are crucial for antibody binding.
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Literature
1.
go back to reference Cambra M, Asensio M, Gorris MT, Perez E, Camarasa E, Garcia JA, Moya JJ, Lopez-Abella D, Vela C, Sanz A (1994) Detection of plum pox potyvirus using monoclonal antibodies to structural and non-structural proteins. EPPO Bull 24:569–577CrossRef Cambra M, Asensio M, Gorris MT, Perez E, Camarasa E, Garcia JA, Moya JJ, Lopez-Abella D, Vela C, Sanz A (1994) Detection of plum pox potyvirus using monoclonal antibodies to structural and non-structural proteins. EPPO Bull 24:569–577CrossRef
2.
go back to reference Cambra M, Capote N, Myrta A, Llacer G (2006) Plum pox virus and the estimated costs associated with sharka disease. EPPO Bull 36:202–204CrossRef Cambra M, Capote N, Myrta A, Llacer G (2006) Plum pox virus and the estimated costs associated with sharka disease. EPPO Bull 36:202–204CrossRef
3.
go back to reference Candresse T, Cambra M, Dallot S, Lanneau M, Asensio M, Gorris MT, Revers F, Macquaire G, Olmos A, Boscia D, Quiot JB, Dunez J (1998) Comparison of monoclonal antibodies and polymerase chain reaction assays for the typing of isolates belonging to the D and M serotypes of plum pox potyvirus. Phytopathology 88:198–204CrossRefPubMed Candresse T, Cambra M, Dallot S, Lanneau M, Asensio M, Gorris MT, Revers F, Macquaire G, Olmos A, Boscia D, Quiot JB, Dunez J (1998) Comparison of monoclonal antibodies and polymerase chain reaction assays for the typing of isolates belonging to the D and M serotypes of plum pox potyvirus. Phytopathology 88:198–204CrossRefPubMed
4.
go back to reference Candresse T, Saenz P, Garcia JA, Boscia D, Navratil M, Gorris MT, Cambra M (2011) Analysis of the epitope structure of Plum pox virus coat protein. Phytopathology 101:611–619CrossRefPubMed Candresse T, Saenz P, Garcia JA, Boscia D, Navratil M, Gorris MT, Cambra M (2011) Analysis of the epitope structure of Plum pox virus coat protein. Phytopathology 101:611–619CrossRefPubMed
5.
go back to reference Carbonell A, Maliogka VI, de Jesus Perez J, Salvador B, San Leon D, Garcia JA, Simon-Mateo C (2013) Diverse amino acid changes at specific positions in the N-terminal region of the coat protein allow Plum pox virus to adapt to new hosts. Mol Plant Microbe Interact 26:1211–1224CrossRefPubMed Carbonell A, Maliogka VI, de Jesus Perez J, Salvador B, San Leon D, Garcia JA, Simon-Mateo C (2013) Diverse amino acid changes at specific positions in the N-terminal region of the coat protein allow Plum pox virus to adapt to new hosts. Mol Plant Microbe Interact 26:1211–1224CrossRefPubMed
6.
go back to reference Chirkov S, Ivanov P, Sheveleva A (2013) Detection and partial molecular characterization of atypical plum pox virus isolates from naturally infected sour cherry. Arch Virol 158:1383–1387CrossRefPubMed Chirkov S, Ivanov P, Sheveleva A (2013) Detection and partial molecular characterization of atypical plum pox virus isolates from naturally infected sour cherry. Arch Virol 158:1383–1387CrossRefPubMed
7.
go back to reference Chirkov S, Prihodko Y, Ivanov P, Sheveleva A (2015) Population of Plum pox virus in European Russia seems to be the most diverse in the world. In: XVIII international plant protection congress, Berlin, p 349 Chirkov S, Prihodko Y, Ivanov P, Sheveleva A (2015) Population of Plum pox virus in European Russia seems to be the most diverse in the world. In: XVIII international plant protection congress, Berlin, p 349
8.
go back to reference Damsteegt VD, Waterworth HE, Mink GI, Howell WE, Levy L (1997) Prunus tomentosa as a diagnostic host for detection of Plum pox virus and other Prunus viruses. Plant Dis 81:329–332CrossRef Damsteegt VD, Waterworth HE, Mink GI, Howell WE, Levy L (1997) Prunus tomentosa as a diagnostic host for detection of Plum pox virus and other Prunus viruses. Plant Dis 81:329–332CrossRef
9.
go back to reference Dolja VV, Haldeman-Cahill R, Montgomery AE, Vandenbosch KA, Carrington JC (1995) Capsid protein determinants involved in cell-to-cell and long distance movement of tobacco etch potyvirus. Virology 206:1007–1016CrossRefPubMed Dolja VV, Haldeman-Cahill R, Montgomery AE, Vandenbosch KA, Carrington JC (1995) Capsid protein determinants involved in cell-to-cell and long distance movement of tobacco etch potyvirus. Virology 206:1007–1016CrossRefPubMed
10.
go back to reference Garcia JA, Glasa M, Cambra M, Candresse T (2014) Plum pox virus and sharka: a model potyvirus and a major disease. Mol Plant Pathol 15:226–241CrossRefPubMed Garcia JA, Glasa M, Cambra M, Candresse T (2014) Plum pox virus and sharka: a model potyvirus and a major disease. Mol Plant Pathol 15:226–241CrossRefPubMed
11.
go back to reference Glasa M, Prikhodko Y, Predajna L, Nagyova A, Shneyder Y, Zhivaeva T, Šubr Z, Cambra M, Candresse T (2013) Characterization of sour cherry isolates of Plum pox virus from the Volga basin in Russia reveals a new cherry strain of the virus. Phytopathology 103:972–979CrossRefPubMed Glasa M, Prikhodko Y, Predajna L, Nagyova A, Shneyder Y, Zhivaeva T, Šubr Z, Cambra M, Candresse T (2013) Characterization of sour cherry isolates of Plum pox virus from the Volga basin in Russia reveals a new cherry strain of the virus. Phytopathology 103:972–979CrossRefPubMed
12.
go back to reference James D, Varga A (2004) Preliminary molecular characterization of Plum pox virus isolate W3174: evidence of a new strain. Acta Hortic 657:177–182CrossRef James D, Varga A (2004) Preliminary molecular characterization of Plum pox virus isolate W3174: evidence of a new strain. Acta Hortic 657:177–182CrossRef
13.
go back to reference James D, Varga A, Sanderson D (2013) Genetic diversity of Plum pox virus: strains, diseases and related challenges for control. Can J Plant Pathol 35:431–441CrossRef James D, Varga A, Sanderson D (2013) Genetic diversity of Plum pox virus: strains, diseases and related challenges for control. Can J Plant Pathol 35:431–441CrossRef
14.
go back to reference James D, Sanderson D, Varga A, Greig N, Stobbs LW (2015) Analysis of the genetic diversity and relationships of selected Canadian isolates of Plum pox virus. Acta Hortic 1063:33–40CrossRef James D, Sanderson D, Varga A, Greig N, Stobbs LW (2015) Analysis of the genetic diversity and relationships of selected Canadian isolates of Plum pox virus. Acta Hortic 1063:33–40CrossRef
15.
go back to reference Maejima K, Himeno M, Komatsu K, Takinami Y, Hashimoto M, Takahashi S, Yamaji Y, Oshima K, Namba S (2011) Molecular epidemiology of Plum pox virus in Japan. Phytopathology 101:567–574CrossRefPubMed Maejima K, Himeno M, Komatsu K, Takinami Y, Hashimoto M, Takahashi S, Yamaji Y, Oshima K, Namba S (2011) Molecular epidemiology of Plum pox virus in Japan. Phytopathology 101:567–574CrossRefPubMed
16.
go back to reference Matic S, Al Rwahnih M, Myrta A (2006) Diversity of Plum pox virus isolates in Bosnia and Herzegovina. Plant Pathol 55:11–17CrossRef Matic S, Al Rwahnih M, Myrta A (2006) Diversity of Plum pox virus isolates in Bosnia and Herzegovina. Plant Pathol 55:11–17CrossRef
17.
go back to reference Matic S, Elmaghraby I, Law V, Varga A, Reed C, Myrta A, James D (2011) Serological and molecular characterization of isolates of Plum pox virus strain El Amar to better understand its diversity, evolution and unique geographical distribution. J Plant Pathol 93:303–310 Matic S, Elmaghraby I, Law V, Varga A, Reed C, Myrta A, James D (2011) Serological and molecular characterization of isolates of Plum pox virus strain El Amar to better understand its diversity, evolution and unique geographical distribution. J Plant Pathol 93:303–310
18.
go back to reference Nemchinov L, Hadidi A (1998) Specific oligonucleotide primers for the direct detection of plum pox potyvirus-cherry subgroup. J Virol Methods 70:231–234CrossRefPubMed Nemchinov L, Hadidi A (1998) Specific oligonucleotide primers for the direct detection of plum pox potyvirus-cherry subgroup. J Virol Methods 70:231–234CrossRefPubMed
19.
go back to reference Olmos A, Cambra M, Dasi MA, Candresse T, Esteban O, Gorris MT, Asensio M (1997) Simultaneous detection and typing of Plum pox potyvirus (PPV) isolates by hemi-nested PCR and PCR-ELISA. J Virol Methods 68:127–137CrossRefPubMed Olmos A, Cambra M, Dasi MA, Candresse T, Esteban O, Gorris MT, Asensio M (1997) Simultaneous detection and typing of Plum pox potyvirus (PPV) isolates by hemi-nested PCR and PCR-ELISA. J Virol Methods 68:127–137CrossRefPubMed
20.
21.
go back to reference Schneider WL, Damsteegt VD, Gildow FE, Stone AL, Sherman DJ, Levy LE, Mavrodieva V, Richwine N, Welliver R, Luster DG (2011) Molecular, ultrastructural, and biological characterization of Pennsylvania isolates of Plum pox virus. Phytopathology 101:627–636CrossRefPubMed Schneider WL, Damsteegt VD, Gildow FE, Stone AL, Sherman DJ, Levy LE, Mavrodieva V, Richwine N, Welliver R, Luster DG (2011) Molecular, ultrastructural, and biological characterization of Pennsylvania isolates of Plum pox virus. Phytopathology 101:627–636CrossRefPubMed
22.
go back to reference Sheveleva A, Ivanov P, Chirkov S, Prihodko Y, Varga A, James D (2012) Plum pox virus W appears to be the most variable strain of the seven recognized strains of the virus. Petria 22:226–232 Sheveleva A, Ivanov P, Chirkov S, Prihodko Y, Varga A, James D (2012) Plum pox virus W appears to be the most variable strain of the seven recognized strains of the virus. Petria 22:226–232
23.
go back to reference Sheveleva A, Kudryavtseva A, Speranskaya A, Belenikin M, Melnikova N, Chirkov S (2013) Complete genome sequence of a novel Plum pox virus strain W isolate determined by 454 pyrosequencing. Virus Genes 47:385–388CrossRefPubMed Sheveleva A, Kudryavtseva A, Speranskaya A, Belenikin M, Melnikova N, Chirkov S (2013) Complete genome sequence of a novel Plum pox virus strain W isolate determined by 454 pyrosequencing. Virus Genes 47:385–388CrossRefPubMed
24.
go back to reference Šubr Z, Pittnerova S, Glasa M (2004) A simplified RT-PCR-based detection of recombinant Plum pox virus isolates. Acta Virol 48:173–176PubMed Šubr Z, Pittnerova S, Glasa M (2004) A simplified RT-PCR-based detection of recombinant Plum pox virus isolates. Acta Virol 48:173–176PubMed
25.
go back to reference Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599CrossRefPubMed Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599CrossRefPubMed
26.
go back to reference Wallis CM, Stone AL, Sherman DJ, Damsteegt VD, Gildow FE, Schneider WL (2007) Adaptation of plum pox virus to a herbaceous host (Pisum sativum) following serial passages. J Gen Virol 88:2839–2845CrossRefPubMed Wallis CM, Stone AL, Sherman DJ, Damsteegt VD, Gildow FE, Schneider WL (2007) Adaptation of plum pox virus to a herbaceous host (Pisum sativum) following serial passages. J Gen Virol 88:2839–2845CrossRefPubMed
27.
go back to reference Weber PH, Bujarski JJ (2015) Multiple functions of capsid proteins in (+) stranded RNA viruses during plant-virus interactions. Virus Res 196:140–149CrossRefPubMed Weber PH, Bujarski JJ (2015) Multiple functions of capsid proteins in (+) stranded RNA viruses during plant-virus interactions. Virus Res 196:140–149CrossRefPubMed
28.
go back to reference Wetzel T, Candresse T, Macquaire G, Ravelonandro M, Dunez J (1992) A highly sensitive immunocapture polymerase chain reaction method for Plum pox virus detection. J Virol Methods 39:27–37CrossRefPubMed Wetzel T, Candresse T, Macquaire G, Ravelonandro M, Dunez J (1992) A highly sensitive immunocapture polymerase chain reaction method for Plum pox virus detection. J Virol Methods 39:27–37CrossRefPubMed
Metadata
Title
Occurrence and characterization of plum pox virus strain D isolates from European Russia and Crimea
Authors
Sergei Chirkov
Peter Ivanov
Anna Sheveleva
Anna Kudryavtseva
Yuri Prikhodko
Irina Mitrofanova
Publication date
01-02-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 2/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-015-2658-x

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