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01-04-2015 | Brief Report

Two endornaviruses show differential infection patterns between gene pools of Phaseolus vulgaris

Authors: Surasak Khankhum, Rodrigo A. Valverde, Marcial A. Pastor-Corrales, Juan M. Osorno, Sead Sabanadzovic

Published in: Archives of Virology | Issue 4/2015

Abstract

We investigated the occurrence of two plant endornaviruses, Phaseolus vulgaris endornavirus 1 and Phaseolus vulgaris endornavirus 2, in breeding lines, cultivars, landraces, and wild genotypes of common bean (Phaseolus vulgaris) collected from the two centers of common bean domestication: Mesoamerica and the Andes. The two endornaviruses were detected in many genotypes of Mesoamerican origin but rarely in genotypes of Andean origin. The results suggest that these two endornaviruses were introduced into the Mesoamerican modern genotypes during common bean domestication and provide more evidence for the existence of two divergent gene pools of common bean.

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Adams MJ, Lefkowitz EJ, King AMQ, Carstens EB (2014) Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses. Arch Virol 159:2831–2834CrossRefPubMed

Becerra-Velásquez VL, Gepts P (1994) RFLP diversity in common bean (Phaseolus vulgaris L.). Genome 37:256–263CrossRef

Bitocchi E, Bellucci E, Giardini A, Rau D, Rodriguez M, Biagetti E, Santilocchi R, Zeuli PS, Gioia T, Logozzo G, Attene G, Nanni L, Papa R (2013) Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the Andes. New Phytol 197:300–313CrossRefPubMed

Bitocchi E, Nanni L, Bellucci E, Rossi M, Giardini A, Zeuli PS, Logozzo G, Stougaard J, McClean P, Attene G, Papa R (2012) Mesoamerican origin of the common bean (Phaseolus vulgaris L.) is revealed by sequence data. Proc Natl Acad Sci USA 109:E788–E796CrossRefPubMedCentralPubMed

Broughton W, Hernandez JG, Blair M, Beebe S, Gepts P, Vanderleyden J (2003) Beans (Phaseolus spp.)—model food legumes. Plant Soil 252:55–128CrossRef

Fukuhara T, Moriyama H (2008) Endornaviruses. Encyclopedia of virology, 3rd edn. Elsevier, Oxford, pp 109–116CrossRef

Fukuhara T, Gibbs MJ (2012) Family Endornaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 855–880

Gepts P, Osborn TC, Rashka K, Bliss FA (1986) Phaseolin-protein variability in wild forms and landraces of the common bean (Phaseolus vulgaris): Evidence for multiple centers of domestication. Econ Bot 40:451–468CrossRef

Hacker CV, Brasier CM, Buck KW (2005) A double-stranded RNA from a Phytophthora species is related to the plant endornaviruses and contains a putative UDP glycosyltransferase gene. J GenVirol 86:1561–1570

10.

Kwak M, Gepts P (2009) Structure of genetic diversity in the two major gene pools of common bean (Phaseolus vulgaris L., Fabaceae). Theor Appl Genet 118:979–992CrossRefPubMed

11.

Liu H, Fu Y, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D (2012) Discovery of novel dsRNA viral sequences by in silico cloning and implications for viral diversity host range and evolution. PLoS ONE 7:e42147. doi:10.1371/journal.pone.0042147 CrossRefPubMedCentralPubMed

12.

Okada R, Kiyota E, Sabanadzovic S, Moriyama H, Fukuhara T, Saha P, Roossinck MJ, Severin A, Valverde RA (2011) Bell pepper endornavirus: molecular and biological properties and occurrence in the genus Capsicum. J Gen Virol 92:2664–2673CrossRefPubMed

13.

Okada R, Young CK, Valverde RA, Sabanadzovic S, Aoki N, Hotate S, Kiyota E, Moriyama H, Fukuhara T (2013) Molecular characterization of two evolutionally distinct endornaviruses co-infecting common bean (Phaseolus vulgaris). J Gen Virol 94:220–229CrossRefPubMed

14.

Osaki H, Nakamura H, Sasaki A, Matsumoto N, Yoshida K (2006) An endornavirus from a hypovirulent strain of the violet root rot fungus, Helicobasidium mompa. Virus Res 118:143–149CrossRefPubMed

15.

Roossinck MJ (2010) Lifestyles of plant viruses. Philos Trans R Soc Lond B Biol Sci 365:1899–1905CrossRefPubMedCentralPubMed

16.

Roossinck MJ (2013) Plant virus ecology. PLoS Pathog 9:e1003304. doi:10.1371/journal.ppat.1003304 CrossRefPubMedCentralPubMed

17.

Singh SP, Gepts PL, Debouck DG (1991) Races of common bean (Phaseolus vulgaris, Fabaceae). Econ Bot 45:379–396CrossRef

18.

Song D, Cho WK, Park S-H, Jo Y, Kim K-H (2013) Evolution and horizontal gene transfer in the Endornavirus genus. PLoS ONE 8:e64270. doi:10.1371/journal.pone.0064270 CrossRefPubMedCentralPubMed

19.

Valverde RA, Sabanadzovic S, Rush MC (2011) Identification of Oryza sativa endornavirus in rice genotypes from breeding programmes in the United States. Plant Breed 130:271–274CrossRef

20.

Valverde RA, Nameth ST, Jordan RL (1990) Analysis of double-stranded RNA for plant virus diagnosis. Plant Dis 74:255–258CrossRef

21.

Wakarchuk DA, Hamilton RI (1990) Partial nucleotide sequence from enigmatic dsRNAs in Phaseolus vulgaris. Plant Mol Biol 14:637–639CrossRefPubMed

22.

Zabalgogeazcoa I, Cox-Foster DC, Gildow FE (1993) Pedigree analysis of the transmission of a double-stranded RNA in Barley cultivars. Plant Sci 91:45–53CrossRef

Title: Two endornaviruses show differential infection patterns between gene pools of Phaseolus vulgaris
Authors: Surasak Khankhum
Rodrigo A. Valverde
Marcial A. Pastor-Corrales
Juan M. Osorno
Sead Sabanadzovic
Publication date: 01-04-2015
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 4/2015
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-015-2335-0

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