Skip to main content
Top
Published in: Archives of Virology 1/2015

01-01-2015 | Brief Report

Development of a multiplex real-time RT-PCR assay for simultaneous detection of dengue and chikungunya viruses

Authors: D. Cecilia, M. Kakade, K. Alagarasu, J. Patil, A. Salunke, D. Parashar, P. S. Shah

Published in: Archives of Virology | Issue 1/2015

Login to get access

Abstract

Dengue and chikungunya viruses co-circulate and cause infections that start with similar symptoms but progress to radically different outcomes. Therefore, an early diagnostic test that can differentiate between the two is needed. A single-step multiplex real-time RT-PCR assay was developed that can simultaneously detect and quantitate RNA of all dengue virus (DENV) serotypes and chikungunya virus (CHIKV). The sensitivity was 100 % for DENV and 95.8 % for CHIKV, whilst the specificity was 100 % for both viruses when compared with conventional RT-PCR. The detection limit ranged from 1 to 50 plaque-forming units. The assay was successfully used for differential diagnosis of dengue and chikungunya in Pune, where the viruses co-circulate.
Literature
2.
go back to reference Myers RM, Carey DE (1967) Concurrent isolation from patient of two arboviruses, Chikungunya and dengue type 2. Science 157:1307–1308PubMedCrossRef Myers RM, Carey DE (1967) Concurrent isolation from patient of two arboviruses, Chikungunya and dengue type 2. Science 157:1307–1308PubMedCrossRef
3.
go back to reference Leroy EM, Nkoghe D, Ollomo B, Nze-Nkogue C, Becquart P, Gerard G, Pourrut X, Charrel R, Moureau G, Ndjoyi-Mbiguino A, De-Lamballerie X (2009) Concurrent chikungunya and dengue virus infections during simultaneous outbreaks, Gabon, 2007. Emerg Infect Dis 15:591–593PubMedCentralPubMedCrossRef Leroy EM, Nkoghe D, Ollomo B, Nze-Nkogue C, Becquart P, Gerard G, Pourrut X, Charrel R, Moureau G, Ndjoyi-Mbiguino A, De-Lamballerie X (2009) Concurrent chikungunya and dengue virus infections during simultaneous outbreaks, Gabon, 2007. Emerg Infect Dis 15:591–593PubMedCentralPubMedCrossRef
4.
go back to reference Chahar HS, Bharaj P, Dar L, Guleria R, Kabra SK, Broor S (2009) Co-infections with chikungunya virus and dengue virus in Delhi, India. Emerg Infect Dis 5:1077–1080CrossRef Chahar HS, Bharaj P, Dar L, Guleria R, Kabra SK, Broor S (2009) Co-infections with chikungunya virus and dengue virus in Delhi, India. Emerg Infect Dis 5:1077–1080CrossRef
5.
go back to reference Kosasih H, de Mast Q, Widjaja S, Sudjana P, Antonjaya U, Ma’roef C, Riswari SF, Porter KR, Burgess TH, Alisjahbana B, van der Ven A, Williams M (2013) Evidence for endemic chikungunya virus infections in Bandung, Indonesia. PLoS Negl Trop Dis 7(10):e2483PubMedCentralPubMedCrossRef Kosasih H, de Mast Q, Widjaja S, Sudjana P, Antonjaya U, Ma’roef C, Riswari SF, Porter KR, Burgess TH, Alisjahbana B, van der Ven A, Williams M (2013) Evidence for endemic chikungunya virus infections in Bandung, Indonesia. PLoS Negl Trop Dis 7(10):e2483PubMedCentralPubMedCrossRef
6.
go back to reference Dash PK, Parida MM, Santosh SR, Saxena P, Srivastava A, Neeraja M, Lakshmi V, Rao PV (2008) Development and evaluation of a 1-step duplex reverse transcription polymerase chain reaction for differential diagnosis of chikungunya and dengue infection. Diagn Microbiol Infect Dis 62:52–57PubMedCrossRef Dash PK, Parida MM, Santosh SR, Saxena P, Srivastava A, Neeraja M, Lakshmi V, Rao PV (2008) Development and evaluation of a 1-step duplex reverse transcription polymerase chain reaction for differential diagnosis of chikungunya and dengue infection. Diagn Microbiol Infect Dis 62:52–57PubMedCrossRef
7.
go back to reference Pongsiri P, Praianantathavorn K, Theamboonlers A, Payungporn S, Poovorawan Y (2012) Multiplex real-time RT-PCR for detecting chikungunya virus and dengue virus. Asian Pac J Trop Med 5(5):342–346PubMedCrossRef Pongsiri P, Praianantathavorn K, Theamboonlers A, Payungporn S, Poovorawan Y (2012) Multiplex real-time RT-PCR for detecting chikungunya virus and dengue virus. Asian Pac J Trop Med 5(5):342–346PubMedCrossRef
8.
go back to reference Gurukumar KR, Priyadarshini D, Patil JA, Bhagat A, Singh A, Shah PS, Cecilia D (2009) Development of real time PCR for detection and quantitation of dengue viruses. Virol J 6:10PubMedCentralPubMedCrossRef Gurukumar KR, Priyadarshini D, Patil JA, Bhagat A, Singh A, Shah PS, Cecilia D (2009) Development of real time PCR for detection and quantitation of dengue viruses. Virol J 6:10PubMedCentralPubMedCrossRef
9.
go back to reference Lanciotti RS, Calisher CH, Gubler DJ, Chang GJ, Vorndam AV (1992) Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction. J Clin Microbiol 30:545–551PubMedCentralPubMed Lanciotti RS, Calisher CH, Gubler DJ, Chang GJ, Vorndam AV (1992) Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction. J Clin Microbiol 30:545–551PubMedCentralPubMed
10.
go back to reference Hasebe F, Parquet MC, Pandey BD, Mathenge EG, Morita K, Balasubramaniam V, Saat Z, Yusop A, Sinniah M, Natkunam S, Igarashi A (2002) Combined detection and genotyping of Chikungunya virus by a specific reverse transcription-polymerase chain reaction. J Med Virol 67:370–374PubMedCrossRef Hasebe F, Parquet MC, Pandey BD, Mathenge EG, Morita K, Balasubramaniam V, Saat Z, Yusop A, Sinniah M, Natkunam S, Igarashi A (2002) Combined detection and genotyping of Chikungunya virus by a specific reverse transcription-polymerase chain reaction. J Med Virol 67:370–374PubMedCrossRef
11.
go back to reference Houng HS, Chung-Ming Chen R, Vaughn DW, Kanesathasan N (2001) Development of a fluorogenic RT-PCR system for quantitative identification of dengue virus serotypes 1–4 using conserved and serotype-specific 3′ noncoding sequences. J Virol Methods 95:19–32. doi:10.1016/S0166-0934(01)00280-4 PubMedCrossRef Houng HS, Chung-Ming Chen R, Vaughn DW, Kanesathasan N (2001) Development of a fluorogenic RT-PCR system for quantitative identification of dengue virus serotypes 1–4 using conserved and serotype-specific 3′ noncoding sequences. J Virol Methods 95:19–32. doi:10.​1016/​S0166-0934(01)00280-4 PubMedCrossRef
12.
go back to reference Parashar D, Paingankar MS, Kumar S, Gokhale MD, Sudeep AB, Shinde SB, Arankalle VA (2013) Administration of E2 and NS1 siRNAs inhibit chikungunya virus replication in vitro and protects mice infected with the virus. PLoS Negl Trop Dis 7(9):e2405PubMedCentralPubMedCrossRef Parashar D, Paingankar MS, Kumar S, Gokhale MD, Sudeep AB, Shinde SB, Arankalle VA (2013) Administration of E2 and NS1 siRNAs inhibit chikungunya virus replication in vitro and protects mice infected with the virus. PLoS Negl Trop Dis 7(9):e2405PubMedCentralPubMedCrossRef
13.
go back to reference Mocellin S, Panelli M, Wang E, Rossi CR, Pilati P, Nitti D, Lise M, Marincola FM (2004) IL-10 stimulatory effects on human NK cells explored by gene profile analysis. Genes Immun 5:621–630PubMedCrossRef Mocellin S, Panelli M, Wang E, Rossi CR, Pilati P, Nitti D, Lise M, Marincola FM (2004) IL-10 stimulatory effects on human NK cells explored by gene profile analysis. Genes Immun 5:621–630PubMedCrossRef
14.
go back to reference Velathanthiri VG, Fernando S, Malavige GN, Peelawatta M, Jayaratne SD, Aaskov J (2006) Comparison of serology, virus isolation and RT-PCR in the diagnosis of dengue viral infections in Sri Lanka. Dengue Bull 30:191 Velathanthiri VG, Fernando S, Malavige GN, Peelawatta M, Jayaratne SD, Aaskov J (2006) Comparison of serology, virus isolation and RT-PCR in the diagnosis of dengue viral infections in Sri Lanka. Dengue Bull 30:191
15.
go back to reference Klungthong C, Gibbons RV, Thaisomboonsuk B, Nisalak A, Kalayanarooj S, Thirawuth V, Nutkumhang N, Mammen MP Jr, Jarman RG (2007) Dengue virus detection using whole blood for reverse transcriptase PCR and virus isolation. J Clin Microbiol 45:2480–2485PubMedCentralPubMedCrossRef Klungthong C, Gibbons RV, Thaisomboonsuk B, Nisalak A, Kalayanarooj S, Thirawuth V, Nutkumhang N, Mammen MP Jr, Jarman RG (2007) Dengue virus detection using whole blood for reverse transcriptase PCR and virus isolation. J Clin Microbiol 45:2480–2485PubMedCentralPubMedCrossRef
Metadata
Title
Development of a multiplex real-time RT-PCR assay for simultaneous detection of dengue and chikungunya viruses
Authors
D. Cecilia
M. Kakade
K. Alagarasu
J. Patil
A. Salunke
D. Parashar
P. S. Shah
Publication date
01-01-2015
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 1/2015
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-014-2217-x

Other articles of this Issue 1/2015

Archives of Virology 1/2015 Go to the issue
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.