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Archives of Virology
Published in: Archives of Virology 2/2012

01-02-2012 | Brief Report

Human sapovirus classification based on complete capsid nucleotide sequences

Authors: Tomoichiro Oka, Kohji Mori, Nobuhiro Iritani, Seiya Harada, You Ueki, Setsuko Iizuka, Keiji Mise, Kosuke Murakami, Takaji Wakita, Kazuhiko Katayama

Published in: Archives of Virology | Issue 2/2012

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Abstract

The genetically diverse sapoviruses (SaVs) are a significant cause of acute human gastroenteritis. Human SaV surveillance is becoming more critical, and a better understanding of the diversity and distribution of the viral genotypes is needed. In this study, we analyzed 106 complete human SaV capsid nucleotide sequences to provide a better understanding of their diversity. Based on those results, we propose a novel standardized classification scheme that meets the requirements of the International Calicivirus Scientific Committee. We believe the classification scheme and strains described here will be of value for the molecular characterization and classification of newly detected SaV genotypes and for comparing data worldwide.
Literature
1.
Akihara S, Phan TG, Nguyen TA, Yagyu F, Okitsu S, Muller WE, Ushijima H (2005) Identification of sapovirus infection among Japanese infants in a day care center. J Med Virol 77:595–601PubMedCrossRef
2.
Clarke IN, Lambden PR (2000) Organization and expression of calicivirus genes. J Infect Dis 181(Supp 2):S309–S316PubMedCrossRef
3.
Dey SK, Phan TG, Nguyen TA, Nishio O, Salim AF, Yagyu F, Okitsu S, Ushijima H (2007) Prevalence of sapovirus infection among infants and children with acute gastroenteritis in Dhaka City, Bangladesh during 2004–2005. J Med Virol 79:633–638PubMedCrossRef
4.
Farkas T, Zhong WM, Jing Y, Huang PW, Espinosa SM, Martinez N, Morrow AL, Ruiz-Palacios GM, Pickering LK, Jiang X (2004) Genetic diversity among sapoviruses. Arch Virol 149:1309–1323PubMedCrossRef
5.
Green KY (2007) Caliciviridae: the Noroviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (eds) Fields Virology, 5th edn. Lippincott Williams & Wilkins, Philadelphia, pp 949–979
6.
Hansman GS, Oka T, Sakon N, Takeda N (2007) Antigenic diversity of human sapoviruses. Emerg Infect Dis 13:1519–1525PubMed
7.
Hansman GS, Saito H, Shibata C, Ishizuka S, Oseto M, Oka T, Takeda N (2007) Outbreak of gastroenteritis due to sapovirus. J Clin Microbiol 45:1347–1349PubMedCrossRef
8.
Harada S, Okada M, Yahiro S, Nishimura K, Matsuo S, Miyasaka J, Nakashima R, Shimada Y, Ueno T, Ikezawa S, Shinozaki K, Katayama K, Wakita T, Takeda N, Oka T (2009) Surveillance of pathogens in outpatients with gastroenteritis and characterization of sapovirus strains between 2002 and 2007 in Kumamoto Prefecture, Japan. J Med Virol 81:1117–1127PubMedCrossRef
9.
Honma S, Nakata S, Sakai Y, Tatsumi M, Numata-Kinoshita K, Chiba S (2001) Sensitive detection and differentiation of Sapporo virus, a member of the family Caliciviridae, by standard and booster nested polymerase chain reaction. J Med Virol 65:413–417PubMedCrossRef
10.
Iizuka S, Oka T, Tabara K, Omura T, Katayama K, Takeda N, Noda M (2010) Detection of sapoviruses and noroviruses in an outbreak of gastroenteritis linked genetically to shellfish. J Med Virol 82:1247–1254PubMedCrossRef
11.
Ishida S, Yoshizumi S, Miyoshi M, Ikeda T, Okui T, Katayama K, Takeda N, Oka T (2008) Characterization of sapoviruses detected in Hokkaido, Japan. Jpn J Infect Dis 61:504–506PubMed
12.
Iwakiri A, Ganmyo H, Yamamoto S, Otao K, Mikasa M, Kizoe S, Katayama K, Wakita T, Takeda N, Oka T (2009) Quantitative analysis of fecal sapovirus shedding: identification of nucleotide substitutions in the capsid protein during prolonged excretion. Arch Virol 154:689–693PubMedCrossRef
13.
Kroneman A, Vennema H, Deforche K, v d Avoort H, Penaranda S, Oberste MS, Vinje J, Koopmans M (2011) An automated genotyping tool for enteroviruses and noroviruses. J Clin Virol 51:121–125PubMedCrossRef
14.
Oka T, Katayama K, Hansman GS, Kageyama T, Ogawa S, Wu FT, White PA, Takeda N (2006) Detection of human sapovirus by real-time reverse transcription-polymerase chain reaction. J Med Virol 78:1347–1353PubMedCrossRef
15.
Oka T, Miyashita K, Katayama K, Wakita T, Takeda N (2009) Distinct genotype and antigenicity among genogroup II sapoviruses. Microbiol Immunol 53:417–420PubMedCrossRef
16.
Okada M, Shinozaki K, Ogawa T, Kaiho I (2002) Molecular epidemiology and phylogenetic analysis of Sapporo-like viruses. Arch Virol 147:1445–1451PubMedCrossRef
17.
Okada M, Yamashita Y, Oseto M, Shinozaki K (2006) The detection of human sapoviruses with universal and genogroup-specific primers. Arch Virol 151:2503–2509PubMedCrossRef
18.
Pang XL, Lee BE, Tyrrell GJ, Preiksaitis JK (2009) Epidemiology and genotype analysis of sapovirus associated with gastroenteritis outbreaks in Alberta, Canada: 2004–2007. J Infect Dis 199:547–551PubMedCrossRef
19.
Svraka S, Vennema H, van der Veer B, Hedlund KO, Thorhagen M, Siebenga J, Duizer E, Koopmans M (2010) Epidemiology and genotype analysis of emerging sapovirus-associated infections across Europe. J Clin Microbiol 48:2191–2198PubMedCrossRef
20.
Vinje J, Deijl H, van der Heide R, Lewis D, Hedlund KO, Svensson L, Koopmans MP (2000) Molecular detection and epidemiology of Sapporo-like viruses. J Clin Microbiol 38:530–536PubMed
21.
Yamashita Y, Ootsuka Y, Kondo R, Oseto M, Doi M, Miyamoto T, Ueda T, Kondo H, Tanaka T, Wakita T, Katayama K, Takeda N, Oka T (2010) Molecular characterization of Sapovirus detected in a gastroenteritis outbreak at a wedding hall. J Med Virol 82:720–726PubMedCrossRef
22.
Yan H, Yagyu F, Okitsu S, Nishio O, Ushijima H (2003) Detection of norovirus (GI, GII), Sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. J Virol Methods 114:37–44PubMedCrossRef
23.
Yoshida T, Kasuo S, Azegami Y, Uchiyama Y, Satsumabayashi K, Shiraishi T, Katayama K, Wakita T, Takeda N, Oka T (2009) Characterization of sapoviruses detected in gastroenteritis outbreaks and identification of asymptomatic adults with high viral load. J Clin Virol 45:67–71PubMedCrossRef
Metadata
Title
Human sapovirus classification based on complete capsid nucleotide sequences
Authors
Tomoichiro Oka
Kohji Mori
Nobuhiro Iritani
Seiya Harada
You Ueki
Setsuko Iizuka
Keiji Mise
Kosuke Murakami
Takaji Wakita
Kazuhiko Katayama
Publication date
01-02-2012
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 2/2012
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-1161-2

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