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Published in: Archives of Virology 1/2012

01-01-2012 | Annotated Sequence Record

Genomic analysis of bacteriophage ESP2949-1, which is virulent for Cronobacter sakazakii

Authors: Young-Duck Lee, Jin-Young Kim, Jong-Hyun Park, HyoIhl Chang

Published in: Archives of Virology | Issue 1/2012

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Abstract

Virulent phage ESP2949-1, which was isolated from sewage, has an icosahedral head, a contractile tail, and a double-stranded DNA genome with a length of 49,116 bp with 50.09% G+C content. Phage ESP2949-1 showed 3% similarity to enterobacteria phage TLS. Bioinformatics analysis of the phage genome revealed 43 putative open reading frames (ORFs). Predicted protein products of the ORFs were determined and described. Based on its morphology, phage ESP2949-1 can be classified as a member of the family Myoviridae. To our knowledge, this is the first report of the genomic sequence and characterization of phage ESP2949-1 isolated from sewage.
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Literature
2.
go back to reference Borysowski J, Weber-Dabrowska B, Górski A (2006) Bacteriophage endolysins as a novel class of antibacterial agents. Exp Biol Med 231:366–377 Borysowski J, Weber-Dabrowska B, Górski A (2006) Bacteriophage endolysins as a novel class of antibacterial agents. Exp Biol Med 231:366–377
3.
go back to reference Dinnes J, Deeks J, Kunst H, Gibson A, Cummins E, Waugh N, Drobniewski F, Lalvani A (2007) A systematic review of rapid diagnostic tests for the detection of tuberculosis infection. Health Technol Assess 11(3):1–196PubMed Dinnes J, Deeks J, Kunst H, Gibson A, Cummins E, Waugh N, Drobniewski F, Lalvani A (2007) A systematic review of rapid diagnostic tests for the detection of tuberculosis infection. Health Technol Assess 11(3):1–196PubMed
4.
go back to reference Farmer JJ, Asbury MA, Hickman FW, Brenner DJ (1980) The Enterobacteriaceae Study Group (USA): Enterobacter sakazakii: a new species of “Enterobacteriaceae” isolated from clinical specimens. Int J Syst Bacteriol 30:569–584CrossRef Farmer JJ, Asbury MA, Hickman FW, Brenner DJ (1980) The Enterobacteriaceae Study Group (USA): Enterobacter sakazakii: a new species of “Enterobacteriaceae” isolated from clinical specimens. Int J Syst Bacteriol 30:569–584CrossRef
5.
go back to reference Friedemann M (2007) Enterobacter sakazakii in food and beverages (other than infant formula and milk powder). Int J Food Microbiol 116:1–10PubMedCrossRef Friedemann M (2007) Enterobacter sakazakii in food and beverages (other than infant formula and milk powder). Int J Food Microbiol 116:1–10PubMedCrossRef
6.
go back to reference Greer GG (2005) Bacteriophage control of foodborne bacteria. J Food Prot 68:1102–1111PubMed Greer GG (2005) Bacteriophage control of foodborne bacteria. J Food Prot 68:1102–1111PubMed
7.
go back to reference Hudson JA, Billington C, Carey-Smith G, Greening G (2005) Bacteriophages as biocontrol agents in food. J Food Prot 68:426–437PubMed Hudson JA, Billington C, Carey-Smith G, Greening G (2005) Bacteriophages as biocontrol agents in food. J Food Prot 68:426–437PubMed
8.
go back to reference Nazarowec-White M, Faber JM (1997) Enterobacter sakazakii: a review. Int J Food Microbiol 34:103–113PubMedCrossRef Nazarowec-White M, Faber JM (1997) Enterobacter sakazakii: a review. Int J Food Microbiol 34:103–113PubMedCrossRef
9.
10.
go back to reference Kim KP, Klumpp J, Loessner MJ (2007) Enterobacter sakazakii bacteriophages can prevent bacterial growth in reconstituted infant formula. Int J Food Microbiol 115:195–203PubMedCrossRef Kim KP, Klumpp J, Loessner MJ (2007) Enterobacter sakazakii bacteriophages can prevent bacterial growth in reconstituted infant formula. Int J Food Microbiol 115:195–203PubMedCrossRef
11.
go back to reference Kucerova E, Clifton SW, Xia XQ, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ (2010) Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One 8(5):e9556CrossRef Kucerova E, Clifton SW, Xia XQ, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ (2010) Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One 8(5):e9556CrossRef
12.
go back to reference Lee SY, Jin HH (2008) Inhibitory activity of natural antimicrobial compounds alone or in combination with nisin against Enterobacter sakazakii. Lett Appl Microbiol 47:315–321PubMedCrossRef Lee SY, Jin HH (2008) Inhibitory activity of natural antimicrobial compounds alone or in combination with nisin against Enterobacter sakazakii. Lett Appl Microbiol 47:315–321PubMedCrossRef
13.
go back to reference Lee YD, Chang HI, Park JH (2011) Complete genomic sequence of virulent Cronobacter sakazakii phage ESSI-2 isolated from swine feces. Arch Virol 156:721–724PubMedCrossRef Lee YD, Chang HI, Park JH (2011) Complete genomic sequence of virulent Cronobacter sakazakii phage ESSI-2 isolated from swine feces. Arch Virol 156:721–724PubMedCrossRef
14.
go back to reference Lu TK, Collins JJ (2007) Dispersing biofilms with engineered enzymatic bacteriophage. Proc Natl Acad Sci USA 104:11197–11202PubMedCrossRef Lu TK, Collins JJ (2007) Dispersing biofilms with engineered enzymatic bacteriophage. Proc Natl Acad Sci USA 104:11197–11202PubMedCrossRef
15.
go back to reference Manfioletti G, Schneider C (1988) A new and fast method for preparing high quality lambda DNA suitable for sequencing. Nucleic Acids Res 16:2873–2884PubMedCrossRef Manfioletti G, Schneider C (1988) A new and fast method for preparing high quality lambda DNA suitable for sequencing. Nucleic Acids Res 16:2873–2884PubMedCrossRef
16.
go back to reference NACMCF (National Advisory Committee on Microbiological Criteria of Foods) (1999) Microbiological evaluations and recommendations on sprouted seeds. Int J Food Microbiol 52:123–153CrossRef NACMCF (National Advisory Committee on Microbiological Criteria of Foods) (1999) Microbiological evaluations and recommendations on sprouted seeds. Int J Food Microbiol 52:123–153CrossRef
17.
go back to reference Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV (1999) Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. J Mol Biol 289:729–745PubMedCrossRef Ponting CP, Aravind L, Schultz J, Bork P, Koonin EV (1999) Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer. J Mol Biol 289:729–745PubMedCrossRef
18.
go back to reference Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, New York
19.
go back to reference Sulakvelidze A, Alavidze Z, Morris JG (2001) Bacteriophage therapy. Antimicrob Agents Chemother 45:649–659PubMedCrossRef Sulakvelidze A, Alavidze Z, Morris JG (2001) Bacteriophage therapy. Antimicrob Agents Chemother 45:649–659PubMedCrossRef
20.
go back to reference Wood WB, Conley MP, Lyle HL, Dickson RC (1978) Attachment of tail fibers in bacteriophage T4 assembly. J Biol Chem 253:2437–2445PubMed Wood WB, Conley MP, Lyle HL, Dickson RC (1978) Attachment of tail fibers in bacteriophage T4 assembly. J Biol Chem 253:2437–2445PubMed
21.
go back to reference Yu J, Moffitt J, Hetherington CL, Bustamante C, Oster G (2010) Mechanochemistry of a viral DNA packaging motor. J Mol Biol 400:186–203PubMedCrossRef Yu J, Moffitt J, Hetherington CL, Bustamante C, Oster G (2010) Mechanochemistry of a viral DNA packaging motor. J Mol Biol 400:186–203PubMedCrossRef
22.
go back to reference Ziegelin G, Scherzinger E, Lurz R, Lanka E (1993) Phage P4 alpha protein is multifunctional with origin recognition, helicase and primase activities. EMBO J 12:3703–3708PubMed Ziegelin G, Scherzinger E, Lurz R, Lanka E (1993) Phage P4 alpha protein is multifunctional with origin recognition, helicase and primase activities. EMBO J 12:3703–3708PubMed
Metadata
Title
Genomic analysis of bacteriophage ESP2949-1, which is virulent for Cronobacter sakazakii
Authors
Young-Duck Lee
Jin-Young Kim
Jong-Hyun Park
HyoIhl Chang
Publication date
01-01-2012
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 1/2012
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-1147-0

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