Skip to main content
Key Specialties
Cardiology Diabetology Endocrinology Gastroenterology Geriatrics and Gerontology Gynecology and Obstetrics Hematology Infectious Disease Internal Medicine Nephrology Neurology Oncology Pediatrics Respiratory Medicine Rheumatology Surgery
Congress Coverage
2024 ACC Congress 2023 ESMO Congress 2023 EASD Congress 2023 ERS Congress 2023 ESC Congress
Clinical Collections
Advances in Alzheimer’s

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.
ADVANCED SEARCH
Log in
Top
Archives of Virology
Published in: Archives of Virology 5/2010

01-05-2010 | Brief Report

Identification and molecular cloning of a novel porcine parvovirus

Authors: Andrew K. Cheung, Guang Wu, David Wang, Darrell O. Bayles, Kelly M. Lager, Amy L. Vincent

Published in: Archives of Virology | Issue 5/2010

Login to get access

Abstract

A novel porcine parvovirus, PPV4, was identified in the lung lavage of a diseased pig coinfected with porcine circovirus type 2. This virus exhibits limited similarity to its closest relative, bovine parvovirus 2, but resembles viruses of the genus Bocavirus (bovine parvovirus, canine minute virus and human bocavirus) that encode an additional ORF3. The ORF3 of PPV4 is predicted to encode a protein of 204 amino acid residues, which is similar in size to the ORF3-encoded proteins of the bocaviruses. Whereas the ORF3-encoded proteins of bocaviruses share significant similarity with each other, the PPV4 ORF3 encoded protein does not exhibit homology with any protein in the GenBank non-redundant database.
Literature
1.
Allander T, Emerson SU, Engle RE, Purcell RH, Bukh J (2001) A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc Natl Acad Sci USA 98:11609–11614CrossRefPubMed
2.
Allander T, Tammi MT, Eriksson M, Bjerkner A, Tiveljung-Lindell A, Andersson B (2005) Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci USA 102:12891–12896CrossRefPubMed
3.
Astell CR, Chow MB, Ward DC (1985) Sequence analysis of the termini of virion and replicative forms of minute virus of mice DNA suggests a modified rolling hairpin model for autonomous parvovirus DNA replication. J Virol 54:171–177PubMed
4.
Blomstrom A-L, Belak S, Fossum C, McKillen J, Allan G, Wallgren P, Berg M (2009) Detection of a novel porcine boca-like virus in the background of porcine circovirus type 2 induced postweaning multisystemic wasting syndrome. Virus Res 146:125–129CrossRefPubMed
5.
Cavalier-Smith T (1974) Palindromic base sequences and replication of eukaryotic chromosome ends. Nature (London) 240:467–470CrossRef
6.
Chen KC, Shull BC, Lederman, Stout ER, Bates RT (1988) Analysis of the termini of the DNA of bovine parvovirus: demonstration of sequence inversion at the left terminus and its implication for the replication model. J Virol 62:3807–3813PubMed
7.
Cheung AK, Lager KM, Kohutyuk OI, Vincent AL, Henry SC, Baker RB, Rowland RR, Dunham AG (2007) Detection of two porcine circovirus type 2 genotypic groups in United States swine herds. Arch Virol 152:1035–1044CrossRefPubMed
8.
Cotmore SF, Tattersall P (1987) The autonomously replicating parvoviruses of vertebrates. Adv Virus Res 33:91–174CrossRefPubMed
9.
Ewing B, Green P (1998) Base-calling of automated sequencer traces using Phred, II: error probabilities. Genome Res 8:186–194PubMed
10.
Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) (2005) Virus taxonomy. 8th report of the International Committee on Taxonomy of Viruses. Academic Press, London
11.
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791CrossRef
12.
Hijikata M, Abe K, Win KM, Shimizu YK, Keicho N, Yoshikura H (2001) Identification of new parvovirus DNA sequence in swine sera from Myanmar. Jpn J Infect Dis 54:244–245PubMed
13.
Needleman SB, Wunsch CD (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol 48:443–453CrossRefPubMed
14.
Lau SK, Woo PC, Tse H, Fu CT, Au WK, Chen XC, Tsoi HW, Tsang TH, Chan JS, Tsang DN, Li KS, Tse CW, Ng TK, Tsang OT, Zheng BJ, Tam S, Chan KH, Zhou B, Yuen KY (2008) Identification of novel porcine and bovine parvoviruses closely related to human parvovirus 4. J Gen Virol 89:1840–1848CrossRefPubMed
15.
Rice P, Longden I, Bleasby A (2000) EMBOSS: the European molecular biology open software suite. Trends Genet 16:276–277CrossRefPubMed
16.
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425PubMed
17.
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467CrossRefPubMed
18.
Schnepp BC, Jensen RL, Chen CL, Johnson PR, Clark KR (2005) Characterization of adeno-associated virus genomes isolated from human tissues. J Virol 79:14793–14803CrossRefPubMed
19.
Schnepp BC, Jensen RL, Clark KR, Johnson PR (2009) Infectious molecular clones of adeno-associated virus isolated directly from human tissues. J Virol 83:1456–1464CrossRefPubMed
20.
Sun Y, Chen AY, Cheng F, Guan W, Johnson FB, Qiu J (2009) Molecular characterization of infectious clones of the minute virus of canines reveals unique features of Bocaviruses. J Virol 83:3956–3967CrossRefPubMed
21.
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599CrossRefPubMed
22.
Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101:11030–11035CrossRefPubMed
23.
Wang D, Urisman A, Liu YT, Springer M, Ksiazek TG, Erdman DD, Mardis ER, Hickenbotham M, Magrini V, Eldred J, Latreille JP, Wilson RK, Ganem D, DeRisi JL (2003) Viral discovery and sequence recovery using DNA Microarrays. PLoS Biology 1:257–260CrossRef
24.
Wolf VH, Menossi M, Mourão GB, Gatti MS (2008) Molecular basis for porcine parvovirus detection in dead fetuses. Genet Mol Res 7:509–517CrossRefPubMed
Metadata
Title
Identification and molecular cloning of a novel porcine parvovirus
Authors
Andrew K. Cheung
Guang Wu
David Wang
Darrell O. Bayles
Kelly M. Lager
Amy L. Vincent
Publication date
01-05-2010
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 5/2010
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-010-0646-8

Other articles of this Issue 5/2010

Archives of Virology 5/2010 Go to the issue

Brief Report

Ectopic expression of H-1 parvovirus NS1 protein induces alterations in actin filaments and cell death in human normal MRC-5 and transformed MRC-5 SV2 cells

Original Article

Distributional characteristics of CD25 and CD127 on CD4+ T cell subsets in chronic HCV infection

Brief Report

Natural infection of vertebrate hosts by different lineages of Buggy Creek virus (family Togaviridae, genus Alphavirus)

Brief Report

Comparison of the coat protein genes of Lettuce big-vein associated virus isolates from Australia with those of isolates from other continents

Original Article

Genomic and biological characterization of chiltepín yellow mosaic virus, a new tymovirus infecting Capsicum annuum var. aviculare in Mexico

Brief Report

Molecular diversity of the DNA-β satellites associated with tomato leaf curl disease in India
Obesity Clinical Trial Summary

At a glance: The STEP trials

Read more

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Pediatric Cardiology Video

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

Cardiopulmonary Comorbidity Video

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Valvular Heart Disease Video

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.

ACC 2024 Congress Coverage

Heart Failure Video

Year in Review: Heart failure and cardiomyopathies

Watch now

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

16-04-2024 Type 2 Diabetes News

Incentivised to exercise

11-04-2024 Lifestyle Modifications News

New intervention for STEMI-related cardiogenic shock

10-04-2024 Myocardial Infarction News

» View more highlights on the ACC 2024 congress hub page

Image Credits