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Published in: Archives of Virology 4/2010

01-04-2010 | Brief Review

Clarification and guidance on the proper usage of virus and virus species names

Authors: Jens H. Kuhn, Peter B. Jahrling

Published in: Archives of Virology | Issue 4/2010

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Abstract

A pivotal step in the development of a consistent nomenclature for virus classification was the introduction of the virus species concept by the International Committee on Taxonomy of Viruses (ICTV) in 1991. Yet, almost two decades later, many virologists still are unable to differentiate between virus species and actual viruses. Here we attempt to explain the origin of this confusion, clarify the difference between taxa and physical entities, and suggest simple measures that could be implemented by ICTV Study Groups to make virus taxonomy and nomenclature more accessible to laboratory virologists.
Literature
1.
go back to reference Abd-Eldaim M, Potgieter L, Kennedy M (2005) Genetic analysis of feline caliciviruses associated with a hemorrhagic-like disease. J Vet Diagn Invest 17:420–429PubMed Abd-Eldaim M, Potgieter L, Kennedy M (2005) Genetic analysis of feline caliciviruses associated with a hemorrhagic-like disease. J Vet Diagn Invest 17:420–429PubMed
2.
go back to reference Agut H (2002) Back to Latin and tradition: a proposal for an official nomenclature of virus species. Arch Virol 147:1465–1470CrossRefPubMed Agut H (2002) Back to Latin and tradition: a proposal for an official nomenclature of virus species. Arch Virol 147:1465–1470CrossRefPubMed
3.
go back to reference Akey JM, Ruhe AL, Akey DT, Wong AK, Connelly CF, Madeoy J, Nicholas TJ, Neff MW (2010) Tracking footprints of artificial selection in the dog genome. Proc Natl Acad Sci USA 107:1160–1165 Akey JM, Ruhe AL, Akey DT, Wong AK, Connelly CF, Madeoy J, Nicholas TJ, Neff MW (2010) Tracking footprints of artificial selection in the dog genome. Proc Natl Acad Sci USA 107:1160–1165
6.
go back to reference Bos L (2002) International naming of viruses––a digest of recent developments. Arch Virol 146:1471–1477CrossRef Bos L (2002) International naming of viruses––a digest of recent developments. Arch Virol 146:1471–1477CrossRef
9.
go back to reference Calisher CH, Mahy BWJ (2003) Taxonomy : get it right or leave it alone. Am J Trop Med Hyg 68:505–506PubMed Calisher CH, Mahy BWJ (2003) Taxonomy : get it right or leave it alone. Am J Trop Med Hyg 68:505–506PubMed
10.
go back to reference Calisher CH (2007) Taxonomy: what’s in a name? Doesn’t a rose by any other name smell as sweet? Croat Med J 48:268–270CrossRefPubMed Calisher CH (2007) Taxonomy: what’s in a name? Doesn’t a rose by any other name smell as sweet? Croat Med J 48:268–270CrossRefPubMed
11.
go back to reference Calisher CH, van Regenmortel MHV (2009) Should all other biologists follow the lead of virologists and stop italicizing the names of living organisms? A proposal. Zootaxa 2113:63–68 Calisher CH, van Regenmortel MHV (2009) Should all other biologists follow the lead of virologists and stop italicizing the names of living organisms? A proposal. Zootaxa 2113:63–68
12.
go back to reference Claridge MF, Dawah HA, Wilson MR (1997) Species: the units of biodiversity. Chapman and Hall, London Claridge MF, Dawah HA, Wilson MR (1997) Species: the units of biodiversity. Chapman and Hall, London
13.
go back to reference Condit RC (2007) Principles of Virology. In: Knipe DM (ed) Fields Virology. Lippincott Williams & Wilkins, Philadelphia, pp 25–57 Condit RC (2007) Principles of Virology. In: Knipe DM (ed) Fields Virology. Lippincott Williams & Wilkins, Philadelphia, pp 25–57
14.
go back to reference Dawkins R (2009) The Greatest Show on Earth - The Evidence for Evolution. Free Press, New York Dawkins R (2009) The Greatest Show on Earth - The Evidence for Evolution. Free Press, New York
15.
go back to reference Drebot MA, Henchal E, Hjelle B, Le Duc JW, Repik PM, Roehrig JT, Schmaljohn CS, Shope RE, Tesch RB, Weaver SC, Calisher CH (2002) Improved clarity of meaning from the use of both formal species names and common (vernacular) virus names in virological literature. Arch Virol 147:2465–2471CrossRefPubMed Drebot MA, Henchal E, Hjelle B, Le Duc JW, Repik PM, Roehrig JT, Schmaljohn CS, Shope RE, Tesch RB, Weaver SC, Calisher CH (2002) Improved clarity of meaning from the use of both formal species names and common (vernacular) virus names in virological literature. Arch Virol 147:2465–2471CrossRefPubMed
16.
go back to reference Fauquet CM, Fargette D (2005) International Committee on Taxonomy of Viruses and the 3, 142 unassigned species. Virol J 2:64CrossRefPubMed Fauquet CM, Fargette D (2005) International Committee on Taxonomy of Viruses and the 3, 142 unassigned species. Virol J 2:64CrossRefPubMed
17.
go back to reference Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) (2005) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, California Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) (2005) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, California
19.
go back to reference Gibbs AJ, Gibbs MJ (2006) A broader definition of ‘the virus species’. Arch Virol 151:1419–1422CrossRefPubMed Gibbs AJ, Gibbs MJ (2006) A broader definition of ‘the virus species’. Arch Virol 151:1419–1422CrossRefPubMed
20.
go back to reference Hurley KF, Pesavento PA, Pedersen NC, Poland AM, Wilson E, Foley JE (2004) An outbreak of virulent systemic feline calicivirus disease. J Am Vet Med Assoc 224:241–249CrossRefPubMed Hurley KF, Pesavento PA, Pedersen NC, Poland AM, Wilson E, Foley JE (2004) An outbreak of virulent systemic feline calicivirus disease. J Am Vet Med Assoc 224:241–249CrossRefPubMed
21.
go back to reference Kingsbury DW (1988) Biological concepts in virus classification. Intervirology 29:242–253PubMed Kingsbury DW (1988) Biological concepts in virus classification. Intervirology 29:242–253PubMed
22.
go back to reference Lamb RA, Collins PL, Kolakofsky D, Melero JA, Nagai Y, Oldstone MBA, Pringle CR, Rima BK (2005) Family Paramyxoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 655–668 Lamb RA, Collins PL, Kolakofsky D, Melero JA, Nagai Y, Oldstone MBA, Pringle CR, Rima BK (2005) Family Paramyxoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 655–668
23.
go back to reference Mayo MA, Horzinek MC (1998) A revised version of the international code of virus classification and nomenclature. Arch Virol 143:1645–1654CrossRef Mayo MA, Horzinek MC (1998) A revised version of the international code of virus classification and nomenclature. Arch Virol 143:1645–1654CrossRef
24.
go back to reference Mayr E (1982) The Growth of Biological Thought; Diversity. Evolution and Inheritance. Harvard University Press. Cambridge, Massachusetts Mayr E (1982) The Growth of Biological Thought; Diversity. Evolution and Inheritance. Harvard University Press. Cambridge, Massachusetts
25.
go back to reference Nichol ST, Beaty BJ, Elliott RM, Goldbach R, Plyusnin A, Schmaljohn CS, Tesh RB (2005) Family Bunyaviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 695–716 Nichol ST, Beaty BJ, Elliott RM, Goldbach R, Plyusnin A, Schmaljohn CS, Tesh RB (2005) Family Bunyaviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 695–716
26.
go back to reference Pedersen NC, Elliott JB, Glasgow A, Poland A, Keel K (2000) An isolated epizootic of hemorrhagic-like fever in cats caused by a novel and highly virulent strain of feline calicivirus. Vet Microbiol 73:281–300CrossRefPubMed Pedersen NC, Elliott JB, Glasgow A, Poland A, Keel K (2000) An isolated epizootic of hemorrhagic-like fever in cats caused by a novel and highly virulent strain of feline calicivirus. Vet Microbiol 73:281–300CrossRefPubMed
27.
go back to reference Pringle CR (1991) The 20th meeting of the executive committee of the international committee on virus taxonomy - Virus species, higher taxa, a Universal Virus Database, and other matters. Arch Virol 119:303–304CrossRef Pringle CR (1991) The 20th meeting of the executive committee of the international committee on virus taxonomy - Virus species, higher taxa, a Universal Virus Database, and other matters. Arch Virol 119:303–304CrossRef
28.
29.
go back to reference Pringle CR (1997) The order Mononegavirales: current status. Arch Virol 142:2321–2326PubMed Pringle CR (1997) The order Mononegavirales: current status. Arch Virol 142:2321–2326PubMed
30.
go back to reference Pringle CR (2005) Order Mononegavirales. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 609–614 Pringle CR (2005) Order Mononegavirales. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 609–614
31.
go back to reference Schorr-Evans EM, Poland A, Johnson WE, Pedersen NC (2003) An epizootic of highly virulent feline calicivirus disease in a hospital setting in New England. J Feline Med Surg 5:217–226CrossRefPubMed Schorr-Evans EM, Poland A, Johnson WE, Pedersen NC (2003) An epizootic of highly virulent feline calicivirus disease in a hospital setting in New England. J Feline Med Surg 5:217–226CrossRefPubMed
32.
go back to reference Snijder EJ, Brinton MA, Faaberg KS, Godeny EK, Gorbalenya AE, MacLachlan NJ, Mengeling WL, Plagemann PGW (2005) Family Arteriviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 965–974 Snijder EJ, Brinton MA, Faaberg KS, Godeny EK, Gorbalenya AE, MacLachlan NJ, Mengeling WL, Plagemann PGW (2005) Family Arteriviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier, San Diego, pp 965–974
33.
34.
go back to reference van Regenmortel MHV (1990) Virus Species, a much overlooked but essential concept in virus classification. Intervirology 31:241–254PubMed van Regenmortel MHV (1990) Virus Species, a much overlooked but essential concept in virus classification. Intervirology 31:241–254PubMed
35.
go back to reference van Regenmortel MHV, Maniloff J, Calisher CH (1991) The concept of virus species. Arch Virol 120:313–314CrossRefPubMed van Regenmortel MHV, Maniloff J, Calisher CH (1991) The concept of virus species. Arch Virol 120:313–314CrossRefPubMed
36.
37.
go back to reference van Regenmortel MHV (2000) On the relative merits of italics, Latin and binomial nomenclature in virus taxonomy. Arch Virol 145:433–441CrossRefPubMed van Regenmortel MHV (2000) On the relative merits of italics, Latin and binomial nomenclature in virus taxonomy. Arch Virol 145:433–441CrossRefPubMed
38.
go back to reference van Regenmortel MHV (2001) Perspectives on binomial names of virus species. Arch Virol 146:1637–1640CrossRefPubMed van Regenmortel MHV (2001) Perspectives on binomial names of virus species. Arch Virol 146:1637–1640CrossRefPubMed
39.
go back to reference van Regenmortel MHV (2003) Viruses are real, virus species are man-made taxonomic constructions. Arch Virol 148:2481–2488CrossRefPubMed van Regenmortel MHV (2003) Viruses are real, virus species are man-made taxonomic constructions. Arch Virol 148:2481–2488CrossRefPubMed
40.
go back to reference van Regenmortel MHV, Mahy BW (2004) Emerging issues in virus taxonomy. Emerg Infect Dis 10:8–13PubMed van Regenmortel MHV, Mahy BW (2004) Emerging issues in virus taxonomy. Emerg Infect Dis 10:8–13PubMed
41.
go back to reference van Regenmortel MHV (2006) Virologists, taxonomy and the demands of logic. Arch Virol 151:1251–1255CrossRefPubMed van Regenmortel MHV (2006) Virologists, taxonomy and the demands of logic. Arch Virol 151:1251–1255CrossRefPubMed
42.
go back to reference van Regenmortel MHV (2007) Virus species and virus identification: past and current controversies. Infect Genet Evol 7:133–144CrossRefPubMed van Regenmortel MHV (2007) Virus species and virus identification: past and current controversies. Infect Genet Evol 7:133–144CrossRefPubMed
43.
go back to reference van Regenmortel MHV (2009) Virus species. In: Mahy BWJ, van Regenmortel MHV (eds) Desk Encyclopedia of General Virology. Elsevier, Oxford, pp 37–41 van Regenmortel MHV (2009) Virus species. In: Mahy BWJ, van Regenmortel MHV (eds) Desk Encyclopedia of General Virology. Elsevier, Oxford, pp 37–41
44.
go back to reference van Regenmortel MHV (2009) The nature of viruses. In: Mahy BWJ, van Regenmortel MHV (eds) Desk Encyclopedia of General Virology. Elsevier, Oxford, pp 23–29 van Regenmortel MHV (2009) The nature of viruses. In: Mahy BWJ, van Regenmortel MHV (eds) Desk Encyclopedia of General Virology. Elsevier, Oxford, pp 23–29
45.
go back to reference van Regenmortel MHV (2010) Logical puzzles and scientific controversies: The nature of species, viruses and living organisms. Syst Appl Microbiol 33:1–6CrossRefPubMed van Regenmortel MHV (2010) Logical puzzles and scientific controversies: The nature of species, viruses and living organisms. Syst Appl Microbiol 33:1–6CrossRefPubMed
46.
go back to reference Vetten HJ, Haenni A-L (2006) Taxon-specific suffixes for vernacular names. Arch Virol 151:1249–1250CrossRefPubMed Vetten HJ, Haenni A-L (2006) Taxon-specific suffixes for vernacular names. Arch Virol 151:1249–1250CrossRefPubMed
47.
go back to reference Wilson DE, Reeder DM (eds) (2005) Mammal species of the world. A taxonomic and geographic reference, 3rd edn. The Johns Hopkins University Press, Baltimore Wilson DE, Reeder DM (eds) (2005) Mammal species of the world. A taxonomic and geographic reference, 3rd edn. The Johns Hopkins University Press, Baltimore
Metadata
Title
Clarification and guidance on the proper usage of virus and virus species names
Authors
Jens H. Kuhn
Peter B. Jahrling
Publication date
01-04-2010
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 4/2010
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-010-0600-9

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