Skip to main content
Top
Published in: International Journal of Legal Medicine 5/2019

01-09-2019 | Population Data

Haplotype data for 17 Y-STR loci in the population of Himachal Pradesh, India

Authors: B. K. Mohapatra, Kamal Chauhan, Pankaj Shrivastava, Anchal Sharma, Seema Dagar, Kamlesh Kaitholia

Published in: International Journal of Legal Medicine | Issue 5/2019

Login to get access

Abstract

We report here the data of Y chromosome haplotypes of 259 unrelated males from the population of Himachal Pradesh, India, using the Yfiler® multiplex kit. A total of 188 haplotypes were detected, out of which 148 were unique. Three samples showed bi-allelic pattern on locus DYS448. The observed genetic diversity and discrimination capacity were 0.996 and 0.73, respectively. In order to compare the genetic distance of the studied population with the published populations, multidimensional scaling (MDS) plot was constructed. The reported data is expected to be valuable for both forensic and population genetics.
Appendix
Available only for authorised users
Literature
2.
go back to reference Carlson RV, Boyd KM, Webb DJ (2004) The revision of the declaration of Helsinki: past, present and future. Br J Clin Pharmacol 57:695–713CrossRef Carlson RV, Boyd KM, Webb DJ (2004) The revision of the declaration of Helsinki: past, present and future. Br J Clin Pharmacol 57:695–713CrossRef
3.
go back to reference Ghosh T, Kalpana D, Mukerjee S, Mukherjee M, Sharma AK, Nath S, Rathod VR, Thakar MK, Jha GN (2011) Genetic diversity of 17 Y-short tandem repeats in Indian population. Forensic Sci Int Genet 5:363–367CrossRef Ghosh T, Kalpana D, Mukerjee S, Mukherjee M, Sharma AK, Nath S, Rathod VR, Thakar MK, Jha GN (2011) Genetic diversity of 17 Y-short tandem repeats in Indian population. Forensic Sci Int Genet 5:363–367CrossRef
4.
go back to reference Yadav B, Raina R, DograTD (2011) Haplotype diversity of 17 Y-chromosomal STRs in Saraswat Brahmin community of North India. Forensic Sci Int Genet 5 (5):63–70 Yadav B, Raina R, DograTD (2011) Haplotype diversity of 17 Y-chromosomal STRs in Saraswat Brahmin community of North India. Forensic Sci Int Genet 5 (5):63–70
5.
go back to reference Shrivastava P, Gupta U, Jain T, Trivedi VB (2015) Y STR haplotype diversity in central Indian population. Ann Hum Biol 43(5):480–487CrossRef Shrivastava P, Gupta U, Jain T, Trivedi VB (2015) Y STR haplotype diversity in central Indian population. Ann Hum Biol 43(5):480–487CrossRef
6.
go back to reference Shrivastava P, Jain T, Trivedi VB (2016) A genetic portrait of Oraon Indian tribe drawn with 15 autosomal and 17 Y chromosomal STR markers. Int J Legal Med 130(5):1185–1186CrossRef Shrivastava P, Jain T, Trivedi VB (2016) A genetic portrait of Oraon Indian tribe drawn with 15 autosomal and 17 Y chromosomal STR markers. Int J Legal Med 130(5):1185–1186CrossRef
7.
go back to reference Shrivastava P, Jain T, Trivedi VB (2017) Haplotype data for 17 Y-STR loci in the population of Madhya Pradesh, India. Forensic Sci Int Genet 26:31–32CrossRef Shrivastava P, Jain T, Trivedi VB (2017) Haplotype data for 17 Y-STR loci in the population of Madhya Pradesh, India. Forensic Sci Int Genet 26:31–32CrossRef
8.
go back to reference Srivastava A, Kumawat R, Dixit S, Kaitholia K, Shrivastava D, Yadav VK, Nigam K, Sharma H, Trivedi VB, Chaubey G, Shrivastava P (2019) Genetic data for PowerPlex 21 TM autosomal and PowerPlex 23 Y-STR TM loci from population of the state of Uttar Pradesh, India. Int J Legal Med. https://doi.org/10.1007/s00414-018-01993-z Srivastava A, Kumawat R, Dixit S, Kaitholia K, Shrivastava D, Yadav VK, Nigam K, Sharma H, Trivedi VB, Chaubey G, Shrivastava P (2019) Genetic data for PowerPlex 21 TM autosomal and PowerPlex 23 Y-STR TM loci from population of the state of Uttar Pradesh, India. Int J Legal Med. https://​doi.​org/​10.​1007/​s00414-018-01993-z
9.
go back to reference Parson W, Roewer L (2010) Publication of population data of linearlyinherited DNA markers in the International Journal of Legal Medicine. Int J Legal Med 124:505–509CrossRef Parson W, Roewer L (2010) Publication of population data of linearlyinherited DNA markers in the International Journal of Legal Medicine. Int J Legal Med 124:505–509CrossRef
10.
go back to reference Poetsch M, Bajanowski T, Pfeiffer H (2012) The publication ofpopulation genetic data in the International Journal of Legal Medicine: guidelines. Int J Legal Med 126:489–490CrossRef Poetsch M, Bajanowski T, Pfeiffer H (2012) The publication ofpopulation genetic data in the International Journal of Legal Medicine: guidelines. Int J Legal Med 126:489–490CrossRef
11.
go back to reference Gusmao L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR et al (2006) DNA commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Sci Int genet 157(2–3):187–197CrossRef Gusmao L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR et al (2006) DNA commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Sci Int genet 157(2–3):187–197CrossRef
Metadata
Title
Haplotype data for 17 Y-STR loci in the population of Himachal Pradesh, India
Authors
B. K. Mohapatra
Kamal Chauhan
Pankaj Shrivastava
Anchal Sharma
Seema Dagar
Kamlesh Kaitholia
Publication date
01-09-2019
Publisher
Springer Berlin Heidelberg
Published in
International Journal of Legal Medicine / Issue 5/2019
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-019-02080-7

Other articles of this Issue 5/2019

International Journal of Legal Medicine 5/2019 Go to the issue