Skip to main content
Top
Published in: Acta Neuropathologica 6/2017

01-12-2017 | Original Paper

Rare ADAR and RNASEH2B variants and a type I interferon signature in glioma and prostate carcinoma risk and tumorigenesis

Authors: Ulrike Beyer, Frank Brand, Helge Martens, Julia Weder, Arne Christians, Natalie Elyan, Bettina Hentschel, Manfred Westphal, Gabriele Schackert, Torsten Pietsch, Bujung Hong, Joachim K. Krauss, Amir Samii, Peter Raab, Anibh Das, Claudia A. Dumitru, I. Erol Sandalcioglu, Oliver W. Hakenberg, Andreas Erbersdobler, Ulrich Lehmann, Guido Reifenberger, Michael Weller, Martin A. M. Reijns, Matthias Preller, Bettina Wiese, Christian Hartmann, Ruthild G. Weber

Published in: Acta Neuropathologica | Issue 6/2017

Login to get access

Abstract

In search of novel germline alterations predisposing to tumors, in particular to gliomas, we studied a family with two brothers affected by anaplastic gliomas, and their father and paternal great-uncle diagnosed with prostate carcinoma. In this family, whole-exome sequencing yielded rare, simultaneously heterozygous variants in the Aicardi–Goutières syndrome (AGS) genes ADAR and RNASEH2B co-segregating with the tumor phenotype. AGS is a genetically induced inflammatory disease particularly of the brain, which has not been associated with a consistently increased cancer risk to date. By targeted sequencing, we identified novel ADAR and RNASEH2B variants, and a 3- to 17-fold frequency increase of the AGS mutations ADAR,c.577C>G;p.(P193A) and RNASEH2B,c.529G>A;p.(A177T) in the germline of familial glioma patients as well as in test and validation cohorts of glioblastomas and prostate carcinomas versus ethnicity-matched controls, whereby rare RNASEH2B variants were significantly more frequent in familial glioma patients. Tumors with ADAR or RNASEH2B variants recapitulated features of AGS, such as calcification and increased type I interferon expression. Patients carrying ADAR or RNASEH2B variants showed upregulation of interferon-stimulated gene (ISG) transcripts in peripheral blood as seen in AGS. An increased ISG expression was also induced by ADAR and RNASEH2B variants in tumor cells and was blocked by the JAK inhibitor Ruxolitinib. Our data implicate rare variants in the AGS genes ADAR and RNASEH2B and a type I interferon signature in glioma and prostate carcinoma risk and tumorigenesis, consistent with a genetic basis underlying inflammation-driven malignant transformation in glioma and prostate carcinoma development.
Appendix
Available only for authorised users
Literature
2.
go back to reference Aicardi J, Goutières F (1984) A progressive familial encephalopathy in infancy with calcifications of the basal ganglia and chronic cerebrospinal fluid lymphocytosis. Ann Neurol 15:49–54CrossRefPubMed Aicardi J, Goutières F (1984) A progressive familial encephalopathy in infancy with calcifications of the basal ganglia and chronic cerebrospinal fluid lymphocytosis. Ann Neurol 15:49–54CrossRefPubMed
3.
go back to reference Aldape K, Zadeh G, Mansouri S, Reifenberger G, von Deimling A (2015) Glioblastoma: pathology, molecular mechanisms and markers. Acta Neuropathol 129:829–848CrossRefPubMed Aldape K, Zadeh G, Mansouri S, Reifenberger G, von Deimling A (2015) Glioblastoma: pathology, molecular mechanisms and markers. Acta Neuropathol 129:829–848CrossRefPubMed
4.
go back to reference Al Olama AA, Kote-Jarai Z, Giles GG, Guy M, Morrison J, Severi G et al (2009) Multiple loci on 8q24 associated with prostate cancer susceptibility. Nat Genet 41:1058–1060CrossRefPubMed Al Olama AA, Kote-Jarai Z, Giles GG, Guy M, Morrison J, Severi G et al (2009) Multiple loci on 8q24 associated with prostate cancer susceptibility. Nat Genet 41:1058–1060CrossRefPubMed
5.
go back to reference Bainbridge MN, Armstrong GN, Gramatges MM, Bertuch AA, Jhangiani SN, Doddapaneni H et al (2014) Germline mutations in shelterin complex genes are associated with familial glioma. J Natl Cancer Inst 107:384PubMed Bainbridge MN, Armstrong GN, Gramatges MM, Bertuch AA, Jhangiani SN, Doddapaneni H et al (2014) Germline mutations in shelterin complex genes are associated with familial glioma. J Natl Cancer Inst 107:384PubMed
6.
go back to reference Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 57:289–300 Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 57:289–300
7.
go back to reference Best RB, Zhu X, Shim J, Lopes PE, Mittal J, Feig M et al (2012) Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles. J Chem Theory Comput 8:3257–3273CrossRefPubMedPubMedCentral Best RB, Zhu X, Shim J, Lopes PE, Mittal J, Feig M et al (2012) Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles. J Chem Theory Comput 8:3257–3273CrossRefPubMedPubMedCentral
8.
go back to reference Campbell IL, Krucker T, Steffensen S, Akwa Y, Powell HC, Lane T et al (1999) Structural and functional neuropathology in transgenic mice with CNS expression of IFN-alpha. Brain Res 835:46–61CrossRefPubMed Campbell IL, Krucker T, Steffensen S, Akwa Y, Powell HC, Lane T et al (1999) Structural and functional neuropathology in transgenic mice with CNS expression of IFN-alpha. Brain Res 835:46–61CrossRefPubMed
9.
go back to reference Capper D, Weissert S, Balss J, Habel A, Meyer J, Jäger D et al (2010) Characterization of R132H mutation-specific IDH1 antibody binding in brain tumors. Brain Pathol 20:245–254CrossRefPubMed Capper D, Weissert S, Balss J, Habel A, Meyer J, Jäger D et al (2010) Characterization of R132H mutation-specific IDH1 antibody binding in brain tumors. Brain Pathol 20:245–254CrossRefPubMed
10.
go back to reference Chakraborty S, Li L, Puliyappadamba VT, Guo G, Hatanpaa KJ, Mickey B et al (2014) Constitutive and ligand-induced EGFR signalling triggers distinct and mutually exclusive downstream signalling networks. Nat Commun 5:5811CrossRefPubMedPubMedCentral Chakraborty S, Li L, Puliyappadamba VT, Guo G, Hatanpaa KJ, Mickey B et al (2014) Constitutive and ligand-induced EGFR signalling triggers distinct and mutually exclusive downstream signalling networks. Nat Commun 5:5811CrossRefPubMedPubMedCentral
11.
go back to reference Chappell WH, Abrams SL, Lertpiriyapong K, Fitzgerald TL, Martelli AM, Cocco L et al (2016) Novel roles of androgen receptor, epidermal growth factor receptor, TP53, regulatory RNAs, NF-kappa-B, chromosomal translocations, neutrophil associated gelatinase, and matrix metalloproteinase-9 in prostate cancer and prostate cancer stem cells. Adv Biol Regul 60:64–87CrossRefPubMed Chappell WH, Abrams SL, Lertpiriyapong K, Fitzgerald TL, Martelli AM, Cocco L et al (2016) Novel roles of androgen receptor, epidermal growth factor receptor, TP53, regulatory RNAs, NF-kappa-B, chromosomal translocations, neutrophil associated gelatinase, and matrix metalloproteinase-9 in prostate cancer and prostate cancer stem cells. Adv Biol Regul 60:64–87CrossRefPubMed
12.
go back to reference Chen Q, Boire A, Jin X, Valiente M, Er EE, Lopez-Soto A et al (2016) Carcinoma-astrocyte gap junctions promote brain metastasis by cGAMP transfer. Nature 20533:493–498CrossRef Chen Q, Boire A, Jin X, Valiente M, Er EE, Lopez-Soto A et al (2016) Carcinoma-astrocyte gap junctions promote brain metastasis by cGAMP transfer. Nature 20533:493–498CrossRef
13.
go back to reference Classen CF, Riehmer V, Landwehr C, Kosfeld A, Heilmann S, Scholz C et al (2013) Dissecting the genotype in syndromic intellectual disability using whole exome sequencing in addition to genome-wide copy number analysis. Hum Genet 132:825–841CrossRefPubMed Classen CF, Riehmer V, Landwehr C, Kosfeld A, Heilmann S, Scholz C et al (2013) Dissecting the genotype in syndromic intellectual disability using whole exome sequencing in addition to genome-wide copy number analysis. Hum Genet 132:825–841CrossRefPubMed
14.
go back to reference Clifford R, Louis T, Robbe P, Ackroyd S, Burns A, Timbs AT et al (2014) SAMHD1 is mutated recurrently in chronic lymphocytic leukemia and is involved in response to DNA damage. Blood 123:1021–1031CrossRefPubMedPubMedCentral Clifford R, Louis T, Robbe P, Ackroyd S, Burns A, Timbs AT et al (2014) SAMHD1 is mutated recurrently in chronic lymphocytic leukemia and is involved in response to DNA damage. Blood 123:1021–1031CrossRefPubMedPubMedCentral
15.
go back to reference Crow YJ, Chase DS, Lowenstein Schmidt J, Szynkiewicz M, Forte GM, Gornall HL et al (2015) Characterization of human disease phenotypes associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, ADAR, and IFIH1. Am J Med Genet A 167A:296–312CrossRefPubMed Crow YJ, Chase DS, Lowenstein Schmidt J, Szynkiewicz M, Forte GM, Gornall HL et al (2015) Characterization of human disease phenotypes associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, ADAR, and IFIH1. Am J Med Genet A 167A:296–312CrossRefPubMed
16.
go back to reference Crow YJ, Hayward BE, Parmar R, Robins P, Leitch A, Ali M et al (2006) Mutations in the gene encoding the 3′-5′ DNA exonuclease TREX1 cause Aicardi-Goutières syndrome at the AGS1 locus. Nat Genet 38:917–920CrossRefPubMed Crow YJ, Hayward BE, Parmar R, Robins P, Leitch A, Ali M et al (2006) Mutations in the gene encoding the 3′-5′ DNA exonuclease TREX1 cause Aicardi-Goutières syndrome at the AGS1 locus. Nat Genet 38:917–920CrossRefPubMed
17.
go back to reference Crow YJ, Leitch A, Hayward BE, Garner A, Parmar R, Griffith E et al (2006) Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutières syndrome and mimic congenital viral brain infection. Nat Genet 38:910–916CrossRefPubMed Crow YJ, Leitch A, Hayward BE, Garner A, Parmar R, Griffith E et al (2006) Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutières syndrome and mimic congenital viral brain infection. Nat Genet 38:910–916CrossRefPubMed
18.
go back to reference Crow YJ, Manel N (2015) Aicardi-Goutières syndrome and the type I interferonopathies. Nat Rev Immunol 15:429–440CrossRefPubMed Crow YJ, Manel N (2015) Aicardi-Goutières syndrome and the type I interferonopathies. Nat Rev Immunol 15:429–440CrossRefPubMed
19.
go back to reference Darden T, York D, Pedersen L (1993) Particle mesh Ewald: an N · log(N) method for Ewald sums in large systems. J Chem Phys 98:10089–10092CrossRef Darden T, York D, Pedersen L (1993) Particle mesh Ewald: an N · log(N) method for Ewald sums in large systems. J Chem Phys 98:10089–10092CrossRef
20.
go back to reference Felsberg J, Rapp M, Loeser S, Fimmers R, Stummer W, Goeppert M et al (2009) Prognostic significance of molecular markers and extent of resection in primary glioblastoma patients. Clin Cancer Res 15:6683–6693CrossRefPubMed Felsberg J, Rapp M, Loeser S, Fimmers R, Stummer W, Goeppert M et al (2009) Prognostic significance of molecular markers and extent of resection in primary glioblastoma patients. Clin Cancer Res 15:6683–6693CrossRefPubMed
21.
go back to reference Felsberg J, Wolter M, Seul H, Friedensdorf B, Göppert M, Sabel MC et al (2010) Rapid and sensitive assessment of the IDH1 and IDH2 mutation status in cerebral gliomas based on DNA pyrosequencing. Acta Neuropathol 119:501–507CrossRefPubMed Felsberg J, Wolter M, Seul H, Friedensdorf B, Göppert M, Sabel MC et al (2010) Rapid and sensitive assessment of the IDH1 and IDH2 mutation status in cerebral gliomas based on DNA pyrosequencing. Acta Neuropathol 119:501–507CrossRefPubMed
22.
go back to reference Goobie GC, Bernatsky S, Ramsey-Goldman R, Clarke AE (2015) Malignancies in systemic lupus erythematosus: a 2015 update. Curr Opin Rheumatol 27:454–460CrossRefPubMedPubMedCentral Goobie GC, Bernatsky S, Ramsey-Goldman R, Clarke AE (2015) Malignancies in systemic lupus erythematosus: a 2015 update. Curr Opin Rheumatol 27:454–460CrossRefPubMedPubMedCentral
23.
go back to reference Günther C, Kind B, Reijns MA, Berndt N, Martinez-Bueno M, Wolf C et al (2015) Defective removal of ribonucleotides from DNA promotes systemic autoimmunity. J Clin Invest 125:413–424CrossRefPubMed Günther C, Kind B, Reijns MA, Berndt N, Martinez-Bueno M, Wolf C et al (2015) Defective removal of ribonucleotides from DNA promotes systemic autoimmunity. J Clin Invest 125:413–424CrossRefPubMed
24.
go back to reference Ha SC, Choi J, Hwang HY, Rich A, Kim YG, Kim KK (2009) The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ alpha(ADAR1). Nucleic Acids Res 37:629–637CrossRefPubMed Ha SC, Choi J, Hwang HY, Rich A, Kim YG, Kim KK (2009) The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZ alpha(ADAR1). Nucleic Acids Res 37:629–637CrossRefPubMed
25.
go back to reference Hart K, Foloppe N, Baker CM, Denning EJ, Nilsson L, Mackerell AD Jr (2012) Optimization of the CHARMM additive force field for DNA: improved treatment of the BI/BII conformational equilibrium. J Chem Theory Comput 8:348–362CrossRefPubMedPubMedCentral Hart K, Foloppe N, Baker CM, Denning EJ, Nilsson L, Mackerell AD Jr (2012) Optimization of the CHARMM additive force field for DNA: improved treatment of the BI/BII conformational equilibrium. J Chem Theory Comput 8:348–362CrossRefPubMedPubMedCentral
26.
go back to reference Hartmann C, Meyer J, Balss J, Capper D, Mueller W, Christians A et al (2009) Type and frequency of IDH1 and IDH2 mutations are related to astrocytic and oligodendroglial differentiation and age: a study of 1,010 diffuse gliomas. Acta Neuropathol 118:469–474CrossRefPubMed Hartmann C, Meyer J, Balss J, Capper D, Mueller W, Christians A et al (2009) Type and frequency of IDH1 and IDH2 mutations are related to astrocytic and oligodendroglial differentiation and age: a study of 1,010 diffuse gliomas. Acta Neuropathol 118:469–474CrossRefPubMed
27.
go back to reference Hartner JC, Walkley CR, Lu J, Orkin SH (2009) ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling. Nat Immunol 10:109–115CrossRefPubMed Hartner JC, Walkley CR, Lu J, Orkin SH (2009) ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling. Nat Immunol 10:109–115CrossRefPubMed
28.
go back to reference Hedvat M, Huszar D, Herrmann A, Gozgit JM, Schroeder A, Sheehy A et al (2009) The JAK2 inhibitor AZD1480 potently blocks Stat3 signaling and oncogenesis in solid tumors. Cancer Cell 16:487–497CrossRefPubMedPubMedCentral Hedvat M, Huszar D, Herrmann A, Gozgit JM, Schroeder A, Sheehy A et al (2009) The JAK2 inhibitor AZD1480 potently blocks Stat3 signaling and oncogenesis in solid tumors. Cancer Cell 16:487–497CrossRefPubMedPubMedCentral
29.
go back to reference Herbert A, Schade M, Lowenhaupt K, Alfken J, Schwartz T, Shlyakhtenko LS et al (1998) The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences. Nucleic Acids Res 26:3486–3493CrossRefPubMedPubMedCentral Herbert A, Schade M, Lowenhaupt K, Alfken J, Schwartz T, Shlyakhtenko LS et al (1998) The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences. Nucleic Acids Res 26:3486–3493CrossRefPubMedPubMedCentral
30.
go back to reference Hiller B, Achleitner M, Glage S, Naumann R, Behrendt R, Roers A (2012) Mammalian RNase H2 removes ribonucleotides from DNA to maintain genome integrity. J Exp Med 209:1419–1426CrossRefPubMedPubMedCentral Hiller B, Achleitner M, Glage S, Naumann R, Behrendt R, Roers A (2012) Mammalian RNase H2 removes ribonucleotides from DNA to maintain genome integrity. J Exp Med 209:1419–1426CrossRefPubMedPubMedCentral
31.
go back to reference Hofer MJ, Campbell IL (2013) Type I interferon in neurological disease-the devil from within. Cytokine Growth Factor Rev 24:257–267CrossRefPubMed Hofer MJ, Campbell IL (2013) Type I interferon in neurological disease-the devil from within. Cytokine Growth Factor Rev 24:257–267CrossRefPubMed
32.
go back to reference Hogg M, Paro S, Keegan LP, O’Connell MA (2011) RNA editing by mammalian ADARs. Adv Genet 73:87–120PubMed Hogg M, Paro S, Keegan LP, O’Connell MA (2011) RNA editing by mammalian ADARs. Adv Genet 73:87–120PubMed
33.
go back to reference Huang HS, Nagane M, Klingbeil CK, Lin H, Nishikawa R, Ji XD et al (1997) The enhanced tumorigenic activity of a mutant epidermal growth factor receptor common in human cancers is mediated by threshold levels of constitutive tyrosine phosphorylation and unattenuated signaling. J Biol Chem 272:2927–2935CrossRefPubMed Huang HS, Nagane M, Klingbeil CK, Lin H, Nishikawa R, Ji XD et al (1997) The enhanced tumorigenic activity of a mutant epidermal growth factor receptor common in human cancers is mediated by threshold levels of constitutive tyrosine phosphorylation and unattenuated signaling. J Biol Chem 272:2927–2935CrossRefPubMed
34.
go back to reference Hwang T, Park CK, Leung AK, Gao Y, Hyde TM, Kleinman JE et al (2016) Dynamic regulation of RNA editing in human brain development and disease. Nat Neurosci 19:1093–1099CrossRefPubMed Hwang T, Park CK, Leung AK, Gao Y, Hyde TM, Kleinman JE et al (2016) Dynamic regulation of RNA editing in human brain development and disease. Nat Neurosci 19:1093–1099CrossRefPubMed
35.
go back to reference Jenkins RB, Xiao Y, Sicotte H, Decker PA, Kollmeyer TM, Hansen HM et al (2012) A low-frequency variant at 8q24.21 is strongly associated with risk of oligodendroglial tumors and astrocytomas with IDH1 or IDH2 mutation. Nat Genet 44:1122–1125CrossRefPubMedPubMedCentral Jenkins RB, Xiao Y, Sicotte H, Decker PA, Kollmeyer TM, Hansen HM et al (2012) A low-frequency variant at 8q24.21 is strongly associated with risk of oligodendroglial tumors and astrocytomas with IDH1 or IDH2 mutation. Nat Genet 44:1122–1125CrossRefPubMedPubMedCentral
36.
go back to reference Johansson G, Andersson U, Melin B (2016) Recent developments in brain tumor predisposing syndromes. Acta Oncol 55:401–411CrossRefPubMed Johansson G, Andersson U, Melin B (2016) Recent developments in brain tumor predisposing syndromes. Acta Oncol 55:401–411CrossRefPubMed
37.
go back to reference Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926–935CrossRef Jorgensen WL, Chandrasekhar J, Madura JD, Impey RW, Klein ML (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926–935CrossRef
38.
go back to reference La Piana R, Uggetti C, Roncarolo F, Vanderver A, Olivieri I, Tonduti D et al (2016) Neuroradiologic patterns and novel imaging findings in Aicardi-Goutières syndrome. Neurology 86:28–35CrossRefPubMedPubMedCentral La Piana R, Uggetti C, Roncarolo F, Vanderver A, Olivieri I, Tonduti D et al (2016) Neuroradiologic patterns and novel imaging findings in Aicardi-Goutières syndrome. Neurology 86:28–35CrossRefPubMedPubMedCentral
39.
go back to reference Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T et al (2016) Analysis of protein-coding genetic variation in 60,706 humans. Nature 536:285–291CrossRefPubMedPubMedCentral Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T et al (2016) Analysis of protein-coding genetic variation in 60,706 humans. Nature 536:285–291CrossRefPubMedPubMedCentral
40.
go back to reference Louis DN, von Deimling A, Cavenee WK (2016) Diffuse astrocytic and oligodendroglial tumours—Introduction. In: Louis DN, Ohgaki H, Wiestler OD, Cavenee WK (eds) WHO classification of tumours of the central nervous system (revised, 4th edn. International Agency for Research on Cancer, Lyon, pp 16–17 Louis DN, von Deimling A, Cavenee WK (2016) Diffuse astrocytic and oligodendroglial tumours—Introduction. In: Louis DN, Ohgaki H, Wiestler OD, Cavenee WK (eds) WHO classification of tumours of the central nervous system (revised, 4th edn. International Agency for Research on Cancer, Lyon, pp 16–17
41.
go back to reference Lynch HT, Kosoko-Lasaki O, Leslie SW, Rendell M, Shaw T, Snyder C et al (2016) Screening for familial and hereditary prostate cancer. Int J Cancer 138:2579–2591CrossRefPubMed Lynch HT, Kosoko-Lasaki O, Leslie SW, Rendell M, Shaw T, Snyder C et al (2016) Screening for familial and hereditary prostate cancer. Int J Cancer 138:2579–2591CrossRefPubMed
42.
go back to reference Mackenzie KJ, Carroll P, Lettice L, Tamauskaite Z, Reddy K, Dix F et al (2016) Ribonuclease H2 mutations induce a cGAS/STING dependent innate immune response. EMBO J 35:831–844CrossRefPubMedPubMedCentral Mackenzie KJ, Carroll P, Lettice L, Tamauskaite Z, Reddy K, Dix F et al (2016) Ribonuclease H2 mutations induce a cGAS/STING dependent innate immune response. EMBO J 35:831–844CrossRefPubMedPubMedCentral
43.
go back to reference Malmer B, Grönberg H, Bergenheim AT, Lenner P, Henriksson R (1999) Familial aggregation of astrocytoma in northern Sweden: an epidemiological cohort study. Int J Cancer 81:366–370CrossRefPubMed Malmer B, Grönberg H, Bergenheim AT, Lenner P, Henriksson R (1999) Familial aggregation of astrocytoma in northern Sweden: an epidemiological cohort study. Int J Cancer 81:366–370CrossRefPubMed
44.
go back to reference Mannion NM, Greenwood SM, Young R, Cox S, Brindle J, Read D et al (2014) The RNA-editing enzyme ADAR1 controls innate immune responses to RNA. Cell Rep 9:1482–1494CrossRefPubMedPubMedCentral Mannion NM, Greenwood SM, Young R, Cox S, Brindle J, Read D et al (2014) The RNA-editing enzyme ADAR1 controls innate immune responses to RNA. Cell Rep 9:1482–1494CrossRefPubMedPubMedCentral
45.
go back to reference McFarland BC, Ma JY, Langford CP, Gillespie GY, Yu H, Zheng Y et al (2011) Therapeutic potential of AZD1480 for the treatment of human glioblastoma. Mol Cancer Ther 10:2384–2393CrossRefPubMedPubMedCentral McFarland BC, Ma JY, Langford CP, Gillespie GY, Yu H, Zheng Y et al (2011) Therapeutic potential of AZD1480 for the treatment of human glioblastoma. Mol Cancer Ther 10:2384–2393CrossRefPubMedPubMedCentral
46.
go back to reference Michelson N, Rincon-Torroella J, Quiñones-Hinojosa A, Greenfield JP (2016) Exploring the role of inflammation in the malignant transformation of low-grade gliomas. J Neuroimmunol 297:132–140CrossRefPubMed Michelson N, Rincon-Torroella J, Quiñones-Hinojosa A, Greenfield JP (2016) Exploring the role of inflammation in the malignant transformation of low-grade gliomas. J Neuroimmunol 297:132–140CrossRefPubMed
47.
go back to reference Ng SK, Weissbach R, Ronson GE, Scadden AD (2013) Proteins that contain a functional Z-DNA-binding domain localize to cytoplasmic stress granules. Nucleic Acids Res 41:9786–9799CrossRefPubMedPubMedCentral Ng SK, Weissbach R, Ronson GE, Scadden AD (2013) Proteins that contain a functional Z-DNA-binding domain localize to cytoplasmic stress granules. Nucleic Acids Res 41:9786–9799CrossRefPubMedPubMedCentral
48.
go back to reference Nick McElhinny SA, Watts BE, Kumar D, Watt DL, Lundström EB, Burgers PM et al (2010) Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases. Proc Natl Acad Sci USA 107:4949–4954CrossRefPubMedPubMedCentral Nick McElhinny SA, Watts BE, Kumar D, Watt DL, Lundström EB, Burgers PM et al (2010) Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases. Proc Natl Acad Sci USA 107:4949–4954CrossRefPubMedPubMedCentral
50.
go back to reference Paz N, Levanon EY, Amariglio N, Heimberger AB, Ram Z, Constantini S et al (2007) Altered adenosine-to-inosine RNA editing in human cancer. Genome Res 17:1586–1595CrossRefPubMedPubMedCentral Paz N, Levanon EY, Amariglio N, Heimberger AB, Ram Z, Constantini S et al (2007) Altered adenosine-to-inosine RNA editing in human cancer. Genome Res 17:1586–1595CrossRefPubMedPubMedCentral
51.
go back to reference Permuth JB, Reid B, Earp M, Chen YA, Monteiro AN, Chen Z et al (2016) Inherited variants affecting RNA editing may contribute to ovarian cancer susceptibility: results from a large-scale collaboration. Oncotarget 7:72381–72394PubMedPubMedCentral Permuth JB, Reid B, Earp M, Chen YA, Monteiro AN, Chen Z et al (2016) Inherited variants affecting RNA editing may contribute to ovarian cancer susceptibility: results from a large-scale collaboration. Oncotarget 7:72381–72394PubMedPubMedCentral
52.
53.
go back to reference Pokatayev V, Hasin N, Chon H, Cerritelli SM, Sakhuja K, Ward JM et al (2016) RNase H2 catalytic core Aicardi-Goutières syndrome-related mutant invokes cGAS-STING innate immune-sensing pathway in mice. J Exp Med 213:329–336CrossRefPubMedPubMedCentral Pokatayev V, Hasin N, Chon H, Cerritelli SM, Sakhuja K, Ward JM et al (2016) RNase H2 catalytic core Aicardi-Goutières syndrome-related mutant invokes cGAS-STING innate immune-sensing pathway in mice. J Exp Med 213:329–336CrossRefPubMedPubMedCentral
54.
go back to reference Reifenberger G, Weber RG, Riehmer V, Kaulich K, Willscher E, Wirth H et al (2014) Molecular characterization of long-term survivors of glioblastoma using genome- and transcriptome-wide profiling. Int J Cancer 135:1822–1831CrossRefPubMed Reifenberger G, Weber RG, Riehmer V, Kaulich K, Willscher E, Wirth H et al (2014) Molecular characterization of long-term survivors of glioblastoma using genome- and transcriptome-wide profiling. Int J Cancer 135:1822–1831CrossRefPubMed
55.
56.
go back to reference Reijns MA, Rabe B, Rigby RE, Mill P, Astell KR, Lettice LA et al (2012) Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development. Cell 149:1008–1022CrossRefPubMedPubMedCentral Reijns MA, Rabe B, Rigby RE, Mill P, Astell KR, Lettice LA et al (2012) Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development. Cell 149:1008–1022CrossRefPubMedPubMedCentral
57.
go back to reference Rice G, Patrick T, Parmar R, Taylor CF, Aeby A, Aicardi J et al (2007) Clinical and molecular phenotype of Aicardi-Goutieres syndrome. Am J Hum Genet 81:713–725CrossRefPubMedPubMedCentral Rice G, Patrick T, Parmar R, Taylor CF, Aeby A, Aicardi J et al (2007) Clinical and molecular phenotype of Aicardi-Goutieres syndrome. Am J Hum Genet 81:713–725CrossRefPubMedPubMedCentral
58.
go back to reference Rice GI, Bond J, Asipu A, Brunette RL, Manfield IW, Carr IM et al (2009) Mutations involved in Aicardi-Goutières syndrome implicate SAMHD1 as regulator of the innate immune response. Nat Genet 41:829–832CrossRefPubMedPubMedCentral Rice GI, Bond J, Asipu A, Brunette RL, Manfield IW, Carr IM et al (2009) Mutations involved in Aicardi-Goutières syndrome implicate SAMHD1 as regulator of the innate immune response. Nat Genet 41:829–832CrossRefPubMedPubMedCentral
59.
go back to reference Rice GI, del Toro Duany Y, Jenkinson EM, Forte GM, Anderson BH, Ariaudo G et al (2014) Gain-of-function mutations in IFIH1 cause a spectrum of human disease phenotypes associated with upregulated type I interferon signaling. Nat Genet 46:503–509CrossRefPubMedPubMedCentral Rice GI, del Toro Duany Y, Jenkinson EM, Forte GM, Anderson BH, Ariaudo G et al (2014) Gain-of-function mutations in IFIH1 cause a spectrum of human disease phenotypes associated with upregulated type I interferon signaling. Nat Genet 46:503–509CrossRefPubMedPubMedCentral
60.
go back to reference Rice GI, Kasher PR, Forte GM, Mannion NM, Greenwood SM, Szynkiewicz M et al (2012) Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature. Nat Genet 44:1243–1248CrossRefPubMedPubMedCentral Rice GI, Kasher PR, Forte GM, Mannion NM, Greenwood SM, Szynkiewicz M et al (2012) Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature. Nat Genet 44:1243–1248CrossRefPubMedPubMedCentral
61.
go back to reference Rice T, Zheng S, Decker PA, Walsh KM, Bracci P, Xiao Y et al (2013) Inherited variant on chromosome 11q23 increases susceptibility to IDH-mutated but not IDH-normal gliomas regardless of grade or histology. Neuro Oncol 15:535–541CrossRefPubMedPubMedCentral Rice T, Zheng S, Decker PA, Walsh KM, Bracci P, Xiao Y et al (2013) Inherited variant on chromosome 11q23 increases susceptibility to IDH-mutated but not IDH-normal gliomas regardless of grade or histology. Neuro Oncol 15:535–541CrossRefPubMedPubMedCentral
62.
go back to reference Takanohashi A, Prust AM, Wang J, Gordish-Dressman H, Bloom M, Rice GI et al (2013) Elevation of proinflammatory cytokines in patients with Aicardi-Goutières syndrome. Neurology 80:997–1002CrossRefPubMedPubMedCentral Takanohashi A, Prust AM, Wang J, Gordish-Dressman H, Bloom M, Rice GI et al (2013) Elevation of proinflammatory cytokines in patients with Aicardi-Goutières syndrome. Neurology 80:997–1002CrossRefPubMedPubMedCentral
63.
go back to reference Van Heteren JT, Rozenberg F, Aronica E, Troost D, Lebon P, Kuijpers TW (2008) Astrocytes produce interferon-alpha and CXCL10, but not IL-6 or CXCL8, in Aicardi-Goutières syndrome. Glia 56:568–578CrossRefPubMed Van Heteren JT, Rozenberg F, Aronica E, Troost D, Lebon P, Kuijpers TW (2008) Astrocytes produce interferon-alpha and CXCL10, but not IL-6 or CXCL8, in Aicardi-Goutières syndrome. Glia 56:568–578CrossRefPubMed
64.
go back to reference Wang Q, Li L, Wang X, Liu H, Yao X (2014) Understanding the recognition mechanisms of Zα domain of human editing enzyme ADAR1 (hZα(ADAR1)) and various Z-DNAs from molecular dynamics simulation. J Mol Model 20:2500CrossRefPubMed Wang Q, Li L, Wang X, Liu H, Yao X (2014) Understanding the recognition mechanisms of Zα domain of human editing enzyme ADAR1 (hZα(ADAR1)) and various Z-DNAs from molecular dynamics simulation. J Mol Model 20:2500CrossRefPubMed
65.
go back to reference Weller M, Weber RG, Willscher E, Riehmer V, Hentschel B, Kreuz M et al (2015) Molecular classification of diffuse cerebral WHO grade II/III gliomas using genome- and transcriptome-wide profiling improves stratification of prognostically distinct patient groups. Acta Neuropathol 129:679–693CrossRefPubMed Weller M, Weber RG, Willscher E, Riehmer V, Hentschel B, Kreuz M et al (2015) Molecular classification of diffuse cerebral WHO grade II/III gliomas using genome- and transcriptome-wide profiling improves stratification of prognostically distinct patient groups. Acta Neuropathol 129:679–693CrossRefPubMed
66.
go back to reference Zhang L, Yang CS, Varelas X, Monti S (2016) Altered RNA editing in 3′ UTR perturbs microRNA-mediated regulation of oncogenes and tumor-suppressors. Sci Rep 6:23226CrossRefPubMedPubMedCentral Zhang L, Yang CS, Varelas X, Monti S (2016) Altered RNA editing in 3′ UTR perturbs microRNA-mediated regulation of oncogenes and tumor-suppressors. Sci Rep 6:23226CrossRefPubMedPubMedCentral
Metadata
Title
Rare ADAR and RNASEH2B variants and a type I interferon signature in glioma and prostate carcinoma risk and tumorigenesis
Authors
Ulrike Beyer
Frank Brand
Helge Martens
Julia Weder
Arne Christians
Natalie Elyan
Bettina Hentschel
Manfred Westphal
Gabriele Schackert
Torsten Pietsch
Bujung Hong
Joachim K. Krauss
Amir Samii
Peter Raab
Anibh Das
Claudia A. Dumitru
I. Erol Sandalcioglu
Oliver W. Hakenberg
Andreas Erbersdobler
Ulrich Lehmann
Guido Reifenberger
Michael Weller
Martin A. M. Reijns
Matthias Preller
Bettina Wiese
Christian Hartmann
Ruthild G. Weber
Publication date
01-12-2017
Publisher
Springer Berlin Heidelberg
Published in
Acta Neuropathologica / Issue 6/2017
Print ISSN: 0001-6322
Electronic ISSN: 1432-0533
DOI
https://doi.org/10.1007/s00401-017-1774-y

Other articles of this Issue 6/2017

Acta Neuropathologica 6/2017 Go to the issue