Skip to main content
Top
Published in: European Radiology 8/2017

01-08-2017 | Magnetic Resonance

Noninvasive IDH1 mutation estimation based on a quantitative radiomics approach for grade II glioma

Authors: Jinhua Yu, Zhifeng Shi, Yuxi Lian, Zeju Li, Tongtong Liu, Yuan Gao, Yuanyuan Wang, Liang Chen, Ying Mao

Published in: European Radiology | Issue 8/2017

Login to get access

Abstract

Objective

The status of isocitrate dehydrogenase 1 (IDH1) is highly correlated with the development, treatment and prognosis of glioma. We explored a noninvasive method to reveal IDH1 status by using a quantitative radiomics approach for grade II glioma.

Methods

A primary cohort consisting of 110 patients pathologically diagnosed with grade II glioma was retrospectively studied. The radiomics method developed in this paper includes image segmentation, high-throughput feature extraction, radiomics sequencing, feature selection and classification. Using the leave-one-out cross-validation (LOOCV) method, the classification result was compared with the real IDH1 situation from Sanger sequencing. Another independent validation cohort containing 30 patients was utilised to further test the method.

Results

A total of 671 high-throughput features were extracted and quantized. 110 features were selected by improved genetic algorithm. In LOOCV, the noninvasive IDH1 status estimation based on the proposed approach presented an estimation accuracy of 0.80, sensitivity of 0.83 and specificity of 0.74. Area under the receiver operating characteristic curve reached 0.86. Further validation on the independent cohort of 30 patients produced similar results.

Conclusions

Radiomics is a potentially useful approach for estimating IDH1 mutation status noninvasively using conventional T2-FLAIR MRI images. The estimation accuracy could potentially be improved by using multiple imaging modalities.

Key Points

Noninvasive IDH1 status estimation can be obtained with a radiomics approach.
Automatic and quantitative processes were established for noninvasive biomarker estimation.
High-throughput MRI features are highly correlated to IDH1 states.
Area under the ROC curve of the proposed estimation method reached 0.86.
Appendix
Available only for authorised users
Literature
2.
go back to reference Wang Q, Zhang H, Zhang J et al (2016) The diagnostic performance of magnetic resonance spectroscopy in differentiating high-from low-grade gliomas: A systematic review and meta-analysis. Eur Radiol. doi:10.1007/s00330-015-4046-z Wang Q, Zhang H, Zhang J et al (2016) The diagnostic performance of magnetic resonance spectroscopy in differentiating high-from low-grade gliomas: A systematic review and meta-analysis. Eur Radiol. doi:10.​1007/​s00330-015-4046-z
6.
go back to reference Beiko J, Suki D, Hess KR et al (2014) IDH1 mutant malignant astrocytomas are more amenable to surgical resection and have a survival benefit associated with maximal surgical resection. Neuro Oncol. doi:10.1093/neuonc/not159 PubMed Beiko J, Suki D, Hess KR et al (2014) IDH1 mutant malignant astrocytomas are more amenable to surgical resection and have a survival benefit associated with maximal surgical resection. Neuro Oncol. doi:10.​1093/​neuonc/​not159 PubMed
7.
go back to reference Aerts HJ, Velazquez ER, Leijenaar RT et al (2014) Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nat Commun. doi:10.1038/ncomms5006 Aerts HJ, Velazquez ER, Leijenaar RT et al (2014) Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nat Commun. doi:10.​1038/​ncomms5006
9.
go back to reference Vallières M, Freeman CR, Skamene SR, El Naqa I (2015) A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities. Phys Med Biol. doi:10.1088/0031-9155/60/14/5471 PubMed Vallières M, Freeman CR, Skamene SR, El Naqa I (2015) A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities. Phys Med Biol. doi:10.​1088/​0031-9155/​60/​14/​5471 PubMed
12.
go back to reference Wang J, Kato F, Oyama-Manabe N et al (2015) Identifying Triple-Negative Breast Cancer Using Background Parenchymal Enhancement Heterogeneity on Dynamic Contrast-Enhanced MRI: A Pilot Radiomics Study. PLoS One. doi:10.1371/journal.pone.0143308 Wang J, Kato F, Oyama-Manabe N et al (2015) Identifying Triple-Negative Breast Cancer Using Background Parenchymal Enhancement Heterogeneity on Dynamic Contrast-Enhanced MRI: A Pilot Radiomics Study. PLoS One. doi:10.​1371/​journal.​pone.​0143308
13.
go back to reference Parmar C, Grossmann P, Rietveld D, Rietbergen MM, Lambin P, Aerts HJ (2015) Radiomic Machine-Learning Classifiers for Prognostic Biomarkers of Head and Neck Cancer. Front Oncol. doi:10.3389/fonc.2015.00272 Parmar C, Grossmann P, Rietveld D, Rietbergen MM, Lambin P, Aerts HJ (2015) Radiomic Machine-Learning Classifiers for Prognostic Biomarkers of Head and Neck Cancer. Front Oncol. doi:10.​3389/​fonc.​2015.​00272
18.
go back to reference Ellingson BM, Cloughesy TF, Pope WB et al (2012) Anatomic localization of O6-methylguanine DNA methyltransferase (MGMT) promoter methylated and unmethylated tumors: a radiographic study in 358 de novo human glioblastomas. Neuroimage. doi:10.1016/j.neuroimage.2011.09.076 PubMed Ellingson BM, Cloughesy TF, Pope WB et al (2012) Anatomic localization of O6-methylguanine DNA methyltransferase (MGMT) promoter methylated and unmethylated tumors: a radiographic study in 358 de novo human glioblastomas. Neuroimage. doi:10.​1016/​j.​neuroimage.​2011.​09.​076 PubMed
19.
go back to reference Wang YY, Zhang T, Li SW et al (2015) Mapping p53 mutations in low-grade glioma: a voxel-based neuroimaging analysis. AJNR Am J Neuroradiol. doi:10.3174/ajnr.A4065 Wang YY, Zhang T, Li SW et al (2015) Mapping p53 mutations in low-grade glioma: a voxel-based neuroimaging analysis. AJNR Am J Neuroradiol. doi:10.​3174/​ajnr.​A4065
20.
21.
go back to reference Tzourio-Mazoyer N, Landeau B, Papathanassiou D et al (2002) Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage. doi:10.1006/nimg.2001.0978 Tzourio-Mazoyer N, Landeau B, Papathanassiou D et al (2002) Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage. doi:10.​1006/​nimg.​2001.​0978
24.
go back to reference Deb K, Pratap A, Agarwal S, Meyarivan T (2002) A fast and elitist multiobjective genetic algorithm: NSGA-II. IEEE TransEvolutComput. doi:10.1109/4235.996017 Deb K, Pratap A, Agarwal S, Meyarivan T (2002) A fast and elitist multiobjective genetic algorithm: NSGA-II. IEEE TransEvolutComput. doi:10.​1109/​4235.​996017
25.
go back to reference Peng H, Long F, Ding C (2005) Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell. doi:10.1109/TPAMI.2005.159 PubMed Peng H, Long F, Ding C (2005) Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy. IEEE Trans Pattern Anal Mach Intell. doi:10.​1109/​TPAMI.​2005.​159 PubMed
27.
go back to reference Nouretdinov I, Costafreda SG, Gammerman A et al (2011) Machine learning classification with confidence: application of transductive conformal predictors to MRI-based diagnostic and prognostic markers in depression. Neuroimage. doi:10.1016/j.neuroimage.2010.05.023 PubMed Nouretdinov I, Costafreda SG, Gammerman A et al (2011) Machine learning classification with confidence: application of transductive conformal predictors to MRI-based diagnostic and prognostic markers in depression. Neuroimage. doi:10.​1016/​j.​neuroimage.​2010.​05.​023 PubMed
29.
30.
go back to reference La Fuente MI, Young RJ, Rubel J et al (2016) Integration of 2-hydroxyglutarate-proton magnetic resonance spectroscopy into clinical practice for disease monitoring in isocitrate dehydrogenase-mutant glioma. Neuro Oncol. doi:10.1093/neuonc/nov307 PubMed La Fuente MI, Young RJ, Rubel J et al (2016) Integration of 2-hydroxyglutarate-proton magnetic resonance spectroscopy into clinical practice for disease monitoring in isocitrate dehydrogenase-mutant glioma. Neuro Oncol. doi:10.​1093/​neuonc/​nov307 PubMed
32.
34.
go back to reference Togao O, Hiwatashi A, Yamashita K et al (2016) Grading diffuse gliomas without intense contrast enhancement by amide proton transfer MR imaging: comparisons with diffusion- and perfusion-weighted imaging. Eur Radiol. doi:10.1007/s00330-016-4328-0 Togao O, Hiwatashi A, Yamashita K et al (2016) Grading diffuse gliomas without intense contrast enhancement by amide proton transfer MR imaging: comparisons with diffusion- and perfusion-weighted imaging. Eur Radiol. doi:10.​1007/​s00330-016-4328-0
35.
go back to reference LLee S, Choi SH, Ryoo I et al (2015) Evaluation of the microenvironmental heterogeneity in high-grade gliomas with IDH1/2 gene mutation using histogram analysis of diffusion-weighted imaging and dynamic-susceptibility contrast perfusion imaging. J Neurooncol. doi:10.1007/s11060-014-1614-z LLee S, Choi SH, Ryoo I et al (2015) Evaluation of the microenvironmental heterogeneity in high-grade gliomas with IDH1/2 gene mutation using histogram analysis of diffusion-weighted imaging and dynamic-susceptibility contrast perfusion imaging. J Neurooncol. doi:10.​1007/​s11060-014-1614-z
Metadata
Title
Noninvasive IDH1 mutation estimation based on a quantitative radiomics approach for grade II glioma
Authors
Jinhua Yu
Zhifeng Shi
Yuxi Lian
Zeju Li
Tongtong Liu
Yuan Gao
Yuanyuan Wang
Liang Chen
Ying Mao
Publication date
01-08-2017
Publisher
Springer Berlin Heidelberg
Published in
European Radiology / Issue 8/2017
Print ISSN: 0938-7994
Electronic ISSN: 1432-1084
DOI
https://doi.org/10.1007/s00330-016-4653-3

Other articles of this Issue 8/2017

European Radiology 8/2017 Go to the issue