Skip to main content
Top
Published in: Journal of Digital Imaging 4/2014

01-08-2014

Multidimensional Texture Characterization: On Analysis for Brain Tumor Tissues Using MRS and MRI

Authors: Deepa Subramaniam Nachimuthu, Arunadevi Baladhandapani

Published in: Journal of Imaging Informatics in Medicine | Issue 4/2014

Login to get access

Abstract

This paper investigates the efficacy of automated pattern recognition methods on magnetic resonance data with the objective of assisting radiologists in the clinical diagnosis of brain tissue tumors. In this paper, the sciences of magnetic resonance imaging (MRI) and magnetic resonance spectroscopy (MRS) are combined to improve the accuracy of the classifier, based on the multidimensional co-occurrence matrices to assess the detection of pathological tissues (tumor and edema), normal tissues (white matter — WM and gray matter — GM), and fluid (cerebrospinal fluid — CSF). The results show the ability of the classifier with iterative training to automatically and simultaneously recover tissue-specific spectral and structural patterns and achieve segmentation of tumor and edema and grading of high and low glioma tumor. Here, extreme learning machine – improved particle swarm optimization (ELM-IPSO) neural network classifier is trained with the feature descriptions in brain magnetic resonance (MR) spectra. This has the characteristics of varying the normal spectral pattern associated with tumor patterns along with imaging features. Validation was performed considering 35 clinical studies. The volumetric features extracted from the vectors of this matrix articulate some important elementary structures, which along with spectroscopic metabolite ratios discriminate the tumor grades and tissue classes. The quantitative 3D analysis reveals significant improvement in terms of global accuracy rate for automatic classification in brain tissues and discriminating pathological tumor tissue from structural healthy brain tissue.
Literature
1.
go back to reference American Cancer Society: Cancer Facts & Figures 2012. American Cancer Society, Atlanta, 2012 American Cancer Society: Cancer Facts & Figures 2012. American Cancer Society, Atlanta, 2012
2.
go back to reference Aruna Devi B, Deepa SN: Brain tumor tissue characterization in 3D magnetic resonance images using improved PSO for extreme learning machine. Progress in Electromagnetics Research B 49:31–54, 2013CrossRef Aruna Devi B, Deepa SN: Brain tumor tissue characterization in 3D magnetic resonance images using improved PSO for extreme learning machine. Progress in Electromagnetics Research B 49:31–54, 2013CrossRef
3.
go back to reference Alparone L, Argenti F, Benelli G: Fast calculation of co-occurrence matrix parameters for image segmentation. Electronics Letters 26(1):23–24, 1990CrossRef Alparone L, Argenti F, Benelli G: Fast calculation of co-occurrence matrix parameters for image segmentation. Electronics Letters 26(1):23–24, 1990CrossRef
4.
go back to reference Bendszus M, Warmuth-Metz M, Klein R: MR spectroscopy in gliomatosis cerebri. American Journal of Neuroradiology 21:375–380, 2000PubMed Bendszus M, Warmuth-Metz M, Klein R: MR spectroscopy in gliomatosis cerebri. American Journal of Neuroradiology 21:375–380, 2000PubMed
5.
go back to reference Croteau D, Scarpace L, Hearshen D, Gutierrez J, Fisher JL, Rock JP, Mikkelsen T: Correlation between MRS imaging and image guided biopsies: semi quantitative and qualitative histopathological analyses of patients with untreated glioma. Neurosurgery 49:823–829, 2001PubMed Croteau D, Scarpace L, Hearshen D, Gutierrez J, Fisher JL, Rock JP, Mikkelsen T: Correlation between MRS imaging and image guided biopsies: semi quantitative and qualitative histopathological analyses of patients with untreated glioma. Neurosurgery 49:823–829, 2001PubMed
6.
go back to reference Chris C, Alex Zijdenbos P, Evans CA: A fully automatic and robust brain MRI tissue classification method. Medical Image Analysis 7:513–527, 2003CrossRef Chris C, Alex Zijdenbos P, Evans CA: A fully automatic and robust brain MRI tissue classification method. Medical Image Analysis 7:513–527, 2003CrossRef
7.
go back to reference Devos A, Simonetti AW, van der Graaf M, Lukas L, Suykens JA, Vanhamme L, Buydens LM, Heerschap A, Van Huffel S: The use of multivariate MR imaging intensities versus metabolic data from MR spectroscopic imaging for brain tumour classification. J Magn Reson. 173:218–228, 2005PubMedCrossRef Devos A, Simonetti AW, van der Graaf M, Lukas L, Suykens JA, Vanhamme L, Buydens LM, Heerschap A, Van Huffel S: The use of multivariate MR imaging intensities versus metabolic data from MR spectroscopic imaging for brain tumour classification. J Magn Reson. 173:218–228, 2005PubMedCrossRef
8.
go back to reference Fei H, Hai-Fen Y, Qing-Hua L: An improved Extreme learning machine based on particle swarm optimization. Proc. of Int. conf. on Intelligent Computing: 699–704, 2012. Fei H, Hai-Fen Y, Qing-Hua L: An improved Extreme learning machine based on particle swarm optimization. Proc. of Int. conf. on Intelligent Computing: 699–704, 2012.
9.
go back to reference Fuster Garcia E, Tortajada S, Vicente J, Robles M, García Gómez JM: Extracting MRS discriminant functional features of brain tumors. NMR Biomed, 2012. doi:10.1002/nbm.2895 Fuster Garcia E, Tortajada S, Vicente J, Robles M, García Gómez JM: Extracting MRS discriminant functional features of brain tumors. NMR Biomed, 2012. doi:10.​1002/​nbm.​2895
10.
go back to reference Garcia Gomez JM: Brain tumor classification using magnetic resonance spectroscopy. Tumors of the Central Nervous System 3:5–19, 2011 Garcia Gomez JM: Brain tumor classification using magnetic resonance spectroscopy. Tumors of the Central Nervous System 3:5–19, 2011
11.
go back to reference Georgiadis P, Kostopoulos S, Cavouras D, Glotsos D, Kalatzis I, Sifaki K, Malamas M, Solomou E, Nikiforidis G: Quantitative combination of volumetric MR imaging and MR spectroscopy data for the discrimination of meningiomas from metastatic brain tumors by means pattern recognition. Magnetic Resonance Imaging 29:525–535, 2011PubMedCrossRef Georgiadis P, Kostopoulos S, Cavouras D, Glotsos D, Kalatzis I, Sifaki K, Malamas M, Solomou E, Nikiforidis G: Quantitative combination of volumetric MR imaging and MR spectroscopy data for the discrimination of meningiomas from metastatic brain tumors by means pattern recognition. Magnetic Resonance Imaging 29:525–535, 2011PubMedCrossRef
12.
go back to reference Haralick RM, Shanmugam K, Dinstein I: Textural features for image classification. IEEE Trans. Syst. Man Cybern. 3:610–621, 1973CrossRef Haralick RM, Shanmugam K, Dinstein I: Textural features for image classification. IEEE Trans. Syst. Man Cybern. 3:610–621, 1973CrossRef
13.
go back to reference Huang GB, Zhu QY, Siew CK: Extreme learning machine: theory and applications. Neurocomputing 70(1):489–501, 2006CrossRef Huang GB, Zhu QY, Siew CK: Extreme learning machine: theory and applications. Neurocomputing 70(1):489–501, 2006CrossRef
14.
15.
go back to reference Kovalev VA, Kruggel F, Gertz HJ, von Cramon Y: Structural brain asymmetry as revealed by 3D texture analysis of anatomical MR images. Proc. of Int. Conf. on Pattern Recognition, Quebec: 808–811, 2002. Kovalev VA, Kruggel F, Gertz HJ, von Cramon Y: Structural brain asymmetry as revealed by 3D texture analysis of anatomical MR images. Proc. of Int. Conf. on Pattern Recognition, Quebec: 808–811, 2002.
16.
go back to reference Kovalev VA, Petrou M, Suckling K: Detection of structural differences between the brains of schizophrenic patients and controls. Psy. Research: Neuro-imaging 124:177–189, 2003 Kovalev VA, Petrou M, Suckling K: Detection of structural differences between the brains of schizophrenic patients and controls. Psy. Research: Neuro-imaging 124:177–189, 2003
17.
go back to reference Kovalev VA, Kruggel F, von Cramon DY, Gertz HJ: Three-dimensional texture analysis of MRI brain datasets. IEEE Trans. on Medical Imaging 20(5):424–433, 2001CrossRef Kovalev VA, Kruggel F, von Cramon DY, Gertz HJ: Three-dimensional texture analysis of MRI brain datasets. IEEE Trans. on Medical Imaging 20(5):424–433, 2001CrossRef
18.
go back to reference Luts J, Laudadio T, Idema AJ, Simonetti AW, Heerschap A, Vandermeulen D, Suykens JAK, Van Huffel S: Nosologic imaging of the brain: segmentation and classification using MRI and MRSI. NMR in Biomedicine 22(4):374–390, 2009aCrossRef Luts J, Laudadio T, Idema AJ, Simonetti AW, Heerschap A, Vandermeulen D, Suykens JAK, Van Huffel S: Nosologic imaging of the brain: segmentation and classification using MRI and MRSI. NMR in Biomedicine 22(4):374–390, 2009aCrossRef
19.
go back to reference Luts J, Heerschap A, Suykens JAK, Van Huffel S: A combined MRI and MRSI based multiclass system for brain tumour recognition using LS-SVMs with class probabilities and feature selection. Artificial Intelligence in Medicine 40(2):87–102, 2007PubMedCrossRef Luts J, Heerschap A, Suykens JAK, Van Huffel S: A combined MRI and MRSI based multiclass system for brain tumour recognition using LS-SVMs with class probabilities and feature selection. Artificial Intelligence in Medicine 40(2):87–102, 2007PubMedCrossRef
20.
go back to reference Luts J, Martinez-Bisbal MC, Van Cauter S. Molla, Piquer E, Suykens JA, Himmelreich K, Celda, UB, Van Huffel S: Differentiation between brain metastases and glioblastoma multiforme based on MRI, MRS and MRSI. Proc. of the IEEE International Symposium on Computer-Based Medical Systems (CBMS), New Mexico: 1–8, 2009b. Luts J, Martinez-Bisbal MC, Van Cauter S. Molla, Piquer E, Suykens JA, Himmelreich K, Celda, UB, Van Huffel S: Differentiation between brain metastases and glioblastoma multiforme based on MRI, MRS and MRSI. Proc. of the IEEE International Symposium on Computer-Based Medical Systems (CBMS), New Mexico: 1–8, 2009b.
21.
go back to reference Majós C, Aguilera C, Cos M, Camins A, Candiota AP, Delgado-Goñi T, Samitier A, Castañer S, Sánchez JJ, Mato D, Acebes JJ, Arús C: In vivo proton magnetic resonance spectroscopy of intraventricular tumours of the brain. Eur Radiol 19(8):2049–2059, 2009PubMedCrossRef Majós C, Aguilera C, Cos M, Camins A, Candiota AP, Delgado-Goñi T, Samitier A, Castañer S, Sánchez JJ, Mato D, Acebes JJ, Arús C: In vivo proton magnetic resonance spectroscopy of intraventricular tumours of the brain. Eur Radiol 19(8):2049–2059, 2009PubMedCrossRef
22.
go back to reference Mahmoud GD, Toussaint G, Constans JM, de Certaines JD: Three dimensional texture analysis in MRI: a preliminary evaluation in gliomas. Magn. Reson Imaging 21:983–987, 2003CrossRef Mahmoud GD, Toussaint G, Constans JM, de Certaines JD: Three dimensional texture analysis in MRI: a preliminary evaluation in gliomas. Magn. Reson Imaging 21:983–987, 2003CrossRef
23.
go back to reference Nelson SJ: Analysis of volume MRI and MR spectroscopic imaging data for the evaluation of patients with brain tumors. Magnetic Resonance in Medicine 46:228–239, 2001PubMedCrossRef Nelson SJ: Analysis of volume MRI and MR spectroscopic imaging data for the evaluation of patients with brain tumors. Magnetic Resonance in Medicine 46:228–239, 2001PubMedCrossRef
24.
go back to reference Simonetti AW, Melssen WJ, de Szabo Edelenyi F, van Asten JJ, Heerschap A, Buydens LM: Combination of feature-reduced MR spectroscopic and MR imaging data for improved brain tumor classification. NMR in biomedicine 18:34–43, 2005PubMedCrossRef Simonetti AW, Melssen WJ, de Szabo Edelenyi F, van Asten JJ, Heerschap A, Buydens LM: Combination of feature-reduced MR spectroscopic and MR imaging data for improved brain tumor classification. NMR in biomedicine 18:34–43, 2005PubMedCrossRef
25.
go back to reference Soffietti R, Baumert BG, Bello L, von Deimling A, Duffau H, Fre’nay M, Grisold W, Grant R, Graus F, Hoang-Xuan K: Guidelines on management of low-grade gliomas: report of an EFNS–EANO* Task Force. European Journal of Neurology 17:1124–1133, 2010PubMedCrossRef Soffietti R, Baumert BG, Bello L, von Deimling A, Duffau H, Fre’nay M, Grisold W, Grant R, Graus F, Hoang-Xuan K: Guidelines on management of low-grade gliomas: report of an EFNS–EANO* Task Force. European Journal of Neurology 17:1124–1133, 2010PubMedCrossRef
26.
go back to reference Simon KW, Kaus M, Jolesz FA, Kikinis R: Adaptive, template moderated, spatially varying statistical classification. Medical Image Analysis 4(1):43–55, 2000CrossRef Simon KW, Kaus M, Jolesz FA, Kikinis R: Adaptive, template moderated, spatially varying statistical classification. Medical Image Analysis 4(1):43–55, 2000CrossRef
27.
go back to reference Weibei Dou, Aoyan Dong, Shaowu Li, Ping Chi, Jean-Marc Constans: Glioma Tissue Modelling by combing the information of MRI and in vivo Multivoxel MRS. Proceedings of Int. Conf. on Bioinformatics and, Biomedical Engineering (iCBBE2010), China:1–4, 2010. Weibei Dou, Aoyan Dong, Shaowu Li, Ping Chi, Jean-Marc Constans: Glioma Tissue Modelling by combing the information of MRI and in vivo Multivoxel MRS. Proceedings of Int. Conf. on Bioinformatics and, Biomedical Engineering (iCBBE2010), China:1–4, 2010.
28.
go back to reference Wang Q, Eirini Karamani L, Erickson M, Uday Kanamalla S, Vasileios M: Classification of brain tumors using MRI and MRS data. Proc. of SPIE 6514:65140S1–65140S8, 2007CrossRef Wang Q, Eirini Karamani L, Erickson M, Uday Kanamalla S, Vasileios M: Classification of brain tumors using MRI and MRS data. Proc. of SPIE 6514:65140S1–65140S8, 2007CrossRef
29.
go back to reference Fan Y, Shen D: Integrated feature extraction and selection for neuroimage classification. Proceedings of SPIE 7259:72591U, 2009CrossRef Fan Y, Shen D: Integrated feature extraction and selection for neuroimage classification. Proceedings of SPIE 7259:72591U, 2009CrossRef
30.
go back to reference Zhu QY, Qin AK, Suganthan PN, Huang GB: Evolutionary extreme learning machine. Pattern Recognition. 38(10):1759–1763, 2005CrossRef Zhu QY, Qin AK, Suganthan PN, Huang GB: Evolutionary extreme learning machine. Pattern Recognition. 38(10):1759–1763, 2005CrossRef
Metadata
Title
Multidimensional Texture Characterization: On Analysis for Brain Tumor Tissues Using MRS and MRI
Authors
Deepa Subramaniam Nachimuthu
Arunadevi Baladhandapani
Publication date
01-08-2014
Publisher
Springer US
Published in
Journal of Imaging Informatics in Medicine / Issue 4/2014
Print ISSN: 2948-2925
Electronic ISSN: 2948-2933
DOI
https://doi.org/10.1007/s10278-013-9669-5

Other articles of this Issue 4/2014

Journal of Digital Imaging 4/2014 Go to the issue