Skip to main content
Top
Published in: Archives of Virology 12/2022

18-10-2022 | Annotated Sequence Record

Characterization of a novel victorivirus from Nigrospora chinensis, a fungus isolated from tobacco

Authors: Jie Zhong, Wen Wen Sui, Ping Li, Qian Jun Tang, Tian Bo Liu, Yan Song Xiao

Published in: Archives of Virology | Issue 12/2022

Login to get access

Abstract

Here, we characterized a new mycovirus from the fungus Nigrospora chinensis, which was named "Nigrospora chinensis victorivirus 1" (NcVV1). The NcVV1 genome is 5283 bp in length, containing two continuous open reading frames (ORFs), ORF1 and ORF2. ORF1 and ORF2 were predicted to encode a putative coat protein (CP) and an RNA-dependent RNA polymerase (RdRp), respectively. The stop codon of ORF1 overlaps with the start codon of ORF2 by the tetranucleotide sequence AUGA. Phylogenetic analysis based on amino acid sequences of RdRp and CP indicated that NcVV1 clustered with members of the genus Victorivirus in the family Totiviridae. To our knowledge, this was the first report of a mycovirus infecting N. chinensis.
Appendix
Available only for authorised users
Literature
1.
go back to reference Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68CrossRef Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68CrossRef
2.
go back to reference Kotta-Loizou I (2021) Mycoviruses and their role in fungal pathogenesis. Curr Opin Microbiol 63:10–18CrossRef Kotta-Loizou I (2021) Mycoviruses and their role in fungal pathogenesis. Curr Opin Microbiol 63:10–18CrossRef
3.
go back to reference Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, Corrochano LM, Gryganskyi A, Grigoriev IV, James TY (2020) Survey of early-diverging lineages of fungi reveals abundant and diverse mycoviruses. mBiol 11:e02027 Myers JM, Bonds AE, Clemons RA, Thapa NA, Simmons DR, Carter-House D, Ortanez J, Liu P, Miralles-Durán A, Desirò A, Longcore JE, Bonito G, Stajich JE, Spatafora JW, Chang Y, Corrochano LM, Gryganskyi A, Grigoriev IV, James TY (2020) Survey of early-diverging lineages of fungi reveals abundant and diverse mycoviruses. mBiol 11:e02027
4.
go back to reference Li H, Havens WM, Nibert ML, Ghabrial SA (2011) RNA sequence determinants of a coupled termination-reinitiation strategy for downstream open reading frame translation in Helminthosporium victoriae virus 190S and other victoriviruses (Family Totiviridae). J Virol 85:7343–7352CrossRef Li H, Havens WM, Nibert ML, Ghabrial SA (2011) RNA sequence determinants of a coupled termination-reinitiation strategy for downstream open reading frame translation in Helminthosporium victoriae virus 190S and other victoriviruses (Family Totiviridae). J Virol 85:7343–7352CrossRef
5.
go back to reference Wang M, Liu F, Crous P, Cai L (2017) Phylogenetic reassessment of Nigrospora: ubiquitous endophytes, plant and human pathogens. Persoonia 39:118–142CrossRef Wang M, Liu F, Crous P, Cai L (2017) Phylogenetic reassessment of Nigrospora: ubiquitous endophytes, plant and human pathogens. Persoonia 39:118–142CrossRef
6.
go back to reference Lee DJ, Lee JS, Lee HB, Choi YJ (2019) Four endophytic Ascomycetes new to korea: Cladosporium anthropophilum, C. pseudocladosporioides, Daldinia eschscholtzii, and Nigrospora chinensis. Kor J Mycol 47:187–197 Lee DJ, Lee JS, Lee HB, Choi YJ (2019) Four endophytic Ascomycetes new to korea: Cladosporium anthropophilum, C. pseudocladosporioides, Daldinia eschscholtzii, and Nigrospora chinensis. Kor J Mycol 47:187–197
7.
go back to reference Zhou Q, Zhong J, Hu Y, Gao BD (2016) A novel nonsegmented double-stranded RNA mycovirus identified in the phytopathogenic fungus Nigrospora oryzae shows similarity to partitivirus-like viruses. Arch Virol 161:229–232CrossRef Zhou Q, Zhong J, Hu Y, Gao BD (2016) A novel nonsegmented double-stranded RNA mycovirus identified in the phytopathogenic fungus Nigrospora oryzae shows similarity to partitivirus-like viruses. Arch Virol 161:229–232CrossRef
8.
go back to reference Zhong J, Zhao SQ, Li GF, Pang XD, Deng XJ, Zhu HJ, Gao BD, Zhou Q (2016) A novel fusarivirus isolated from the phytopathogenic fungus Nigrospora oryzae. Virus Genes 52:891–895CrossRef Zhong J, Zhao SQ, Li GF, Pang XD, Deng XJ, Zhu HJ, Gao BD, Zhou Q (2016) A novel fusarivirus isolated from the phytopathogenic fungus Nigrospora oryzae. Virus Genes 52:891–895CrossRef
9.
go back to reference Zhong J, Zhou Q, Hu Y, Zhu HJ, Gao BD (2016) Molecular identification of a novel victorivirus from the phytopathogenic fungus Nigrospora oryzae. Virus Genes 52:156–159CrossRef Zhong J, Zhou Q, Hu Y, Zhu HJ, Gao BD (2016) Molecular identification of a novel victorivirus from the phytopathogenic fungus Nigrospora oryzae. Virus Genes 52:156–159CrossRef
10.
go back to reference Liu H, Liu R, Li CX, Wang H, Zhu HJ, Gao BD, Zhou Q, Zhong J (2019) A Victorivirus and two novel Mitoviruses co-infected the plant pathogen Nigrospora oryzae. Viruses 11:83CrossRef Liu H, Liu R, Li CX, Wang H, Zhu HJ, Gao BD, Zhou Q, Zhong J (2019) A Victorivirus and two novel Mitoviruses co-infected the plant pathogen Nigrospora oryzae. Viruses 11:83CrossRef
11.
go back to reference Hu Z, Guo J, Gao BD, Zhong J (2020) A novel mycovirus isolated from the plant-pathogenic fungus Alternaria dianthicola. Arch Virol 165:2105–2109CrossRef Hu Z, Guo J, Gao BD, Zhong J (2020) A novel mycovirus isolated from the plant-pathogenic fungus Alternaria dianthicola. Arch Virol 165:2105–2109CrossRef
12.
go back to reference Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRef Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729CrossRef
13.
go back to reference Routhier E, Bruenn JA (1998) Functions of conserved motifs in the RNA-dependent RNA polymerase of a yeast double-stranded RNA virus. J Virol 72:4427–4429CrossRef Routhier E, Bruenn JA (1998) Functions of conserved motifs in the RNA-dependent RNA polymerase of a yeast double-stranded RNA virus. J Virol 72:4427–4429CrossRef
14.
go back to reference Wickner RB, Ghabrial SA, Nibert ML, Patterson JL, Wang CC (2011) Family Totiviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowits EJ (eds) Virus taxonomy: ninth report of the international committee for the taxonomy of viruses. Elsevier, Academic Press, New York, pp 639–650 Wickner RB, Ghabrial SA, Nibert ML, Patterson JL, Wang CC (2011) Family Totiviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowits EJ (eds) Virus taxonomy: ninth report of the international committee for the taxonomy of viruses. Elsevier, Academic Press, New York, pp 639–650
15.
go back to reference Khan HA, Sato Y, Kondo H, Jamal A, Bhatti MF, Suzuki N (2022) A novel victorivirus from the phytopathogenic fungus Neofusicoccum parvum. Arch Virol 167:923–929CrossRef Khan HA, Sato Y, Kondo H, Jamal A, Bhatti MF, Suzuki N (2022) A novel victorivirus from the phytopathogenic fungus Neofusicoccum parvum. Arch Virol 167:923–929CrossRef
Metadata
Title
Characterization of a novel victorivirus from Nigrospora chinensis, a fungus isolated from tobacco
Authors
Jie Zhong
Wen Wen Sui
Ping Li
Qian Jun Tang
Tian Bo Liu
Yan Song Xiao
Publication date
18-10-2022
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 12/2022
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-022-05619-z

Other articles of this Issue 12/2022

Archives of Virology 12/2022 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.