Skip to main content
Top
Published in: Archives of Virology 12/2022

22-09-2022 | Brief Report

Coinfections of African swine fever virus, porcine circovirus 2 and 3, and porcine parvovirus 1 in swine in Nigeria

Authors: Pam Dachung Luka, Adeyinka Jeremy Adedeji, Anvou R. Jambol, Isioma V. Ifende, Helen G. Luka, Nyam D. Choji, Rebecca Weka, Tirumala B.K. Settypalli, Jenna E. Achenbach, Giovanni Cattoli, Charles E. Lamien, Umberto Molini, Giovanni Franzo, William G. Dundon

Published in: Archives of Virology | Issue 12/2022

Login to get access

Abstract

As pig production increases in Africa, it is essential to identify the pathogens that are circulating in the swine population to assess pig welfare and implement targeted control measures. For this reason, DNA samples collected from pigs in Nigeria in the context of African swine fever monitoring were further screened by PCR for porcine circovirus 2 (PCV-2), porcine circovirus 3 (PCV-3), and porcine parvovirus 1 (PPV1). Forty-seven (45%) pigs were positive for two or more pathogens. Sequence analysis identified PCV-2 genotypes a, b, and d, while limited genetic heterogenicity was observed among PCV-3 strains. All except one of the PPV1 sequences were genetically distinct from those previously identified in other countries.
Appendix
Available only for authorised users
Literature
1.
go back to reference Saade G, Deblanc C, Bougon J, Marois-Créhan C, Fablet C, Auray G, Belloc C, Leblanc-Maridor M, Gagnon CA, Zhu J, Gottschalk M, Summerfield A, Simon G, Bertho N, Meurens F (2020) Coinfections and their molecular consequences in the porcine respiratory tract. Vet Res 51:80CrossRef Saade G, Deblanc C, Bougon J, Marois-Créhan C, Fablet C, Auray G, Belloc C, Leblanc-Maridor M, Gagnon CA, Zhu J, Gottschalk M, Summerfield A, Simon G, Bertho N, Meurens F (2020) Coinfections and their molecular consequences in the porcine respiratory tract. Vet Res 51:80CrossRef
2.
go back to reference Ouyang T, Zhang X, Liu X, Ren L (2019) Co-Infection of Swine with Porcine Circovirus Type 2 and Other Swine Viruses. Viruses 11:185CrossRef Ouyang T, Zhang X, Liu X, Ren L (2019) Co-Infection of Swine with Porcine Circovirus Type 2 and Other Swine Viruses. Viruses 11:185CrossRef
3.
go back to reference Zhao D, Yang B, Yuan X, Shen C, Zhang D, Shi X, Zhang T, Cui H, Yang J, Chen X, Hao Y, Zheng H, Zhang K, Liu X (2021) Advanced research in porcine reproductive and respiratory syndrome virus co-infection with other pathogens in swine. Front Vet Sci 8:699561CrossRef Zhao D, Yang B, Yuan X, Shen C, Zhang D, Shi X, Zhang T, Cui H, Yang J, Chen X, Hao Y, Zheng H, Zhang K, Liu X (2021) Advanced research in porcine reproductive and respiratory syndrome virus co-infection with other pathogens in swine. Front Vet Sci 8:699561CrossRef
4.
go back to reference Dorr PM, Baker RB, Almond GW, Wayne SR, Gebreyes WA (2007) Epidemiologic assessment of porcine circovirus type 2 coinfection with other pathogens in swine. J Amer Vet Med Assoc 230:244–250CrossRef Dorr PM, Baker RB, Almond GW, Wayne SR, Gebreyes WA (2007) Epidemiologic assessment of porcine circovirus type 2 coinfection with other pathogens in swine. J Amer Vet Med Assoc 230:244–250CrossRef
5.
go back to reference Kim J, Chung HK, Jung T, Cho WS, Choi C, Chae C (2002) Postweaning multisystemic wasting syndrome of pigs in Korea: prevalence, microscopic lesions and coexisting microorganisms. J Vet Med Sci 64:57–62CrossRef Kim J, Chung HK, Jung T, Cho WS, Choi C, Chae C (2002) Postweaning multisystemic wasting syndrome of pigs in Korea: prevalence, microscopic lesions and coexisting microorganisms. J Vet Med Sci 64:57–62CrossRef
6.
go back to reference Opriessnig T, Halbur PG (2012) Concurrent infections are important for expression of porcine circovirus associated disease. Virus Res 164:20–32CrossRef Opriessnig T, Halbur PG (2012) Concurrent infections are important for expression of porcine circovirus associated disease. Virus Res 164:20–32CrossRef
7.
go back to reference Chen N, Huang Y, Ye M, Li S, Xiao Y, Cui B, Zhu J (2019) Co-infection status of classical swine fever virus (CSFV), porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circoviruses (PCV2 and PCV3) in eight regions of China from 2016 to 2018. Infect Genet Evol 68:127–135CrossRef Chen N, Huang Y, Ye M, Li S, Xiao Y, Cui B, Zhu J (2019) Co-infection status of classical swine fever virus (CSFV), porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circoviruses (PCV2 and PCV3) in eight regions of China from 2016 to 2018. Infect Genet Evol 68:127–135CrossRef
8.
go back to reference Dinh PX, Nguyen MN, Nguyen HT, Tran VH, Tran QD, Dang KH, Vo DT, Le HT, Nguyen NTT, Nguyen TT, Do DT (2021) Porcine circovirus genotypes and their copathogens in pigs with respiratory disease in southern provinces of Vietnam. Arch Virol 166:403–411CrossRef Dinh PX, Nguyen MN, Nguyen HT, Tran VH, Tran QD, Dang KH, Vo DT, Le HT, Nguyen NTT, Nguyen TT, Do DT (2021) Porcine circovirus genotypes and their copathogens in pigs with respiratory disease in southern provinces of Vietnam. Arch Virol 166:403–411CrossRef
9.
go back to reference Dundon WG, Franzo G, Settypalli TBK, Dharmayanti NLPI, Ankhanbaatar U, Sendow I, Ratnawati A, Sainnokhoi T, Molini U, Cattoli G, Lamien CE (2022) Evidence of coinfection of pigs with African swine fever virus and porcine circovirus 2. Arch Virol 167:207–211CrossRef Dundon WG, Franzo G, Settypalli TBK, Dharmayanti NLPI, Ankhanbaatar U, Sendow I, Ratnawati A, Sainnokhoi T, Molini U, Cattoli G, Lamien CE (2022) Evidence of coinfection of pigs with African swine fever virus and porcine circovirus 2. Arch Virol 167:207–211CrossRef
10.
go back to reference Penrith ML, Kivaria FM (2022) One hundred years of African swine fever in Africa: Where have we been, where are we now, where are we going? Transbound Emerg Dis in press Penrith ML, Kivaria FM (2022) One hundred years of African swine fever in Africa: Where have we been, where are we now, where are we going? Transbound Emerg Dis in press
11.
go back to reference Segalés J (2012) Porcine Circovirus Type 2 (PCV2) Infections: Clinical Signs, Pathology and Laboratory Diagnosis. Virus Res 164:10–19CrossRef Segalés J (2012) Porcine Circovirus Type 2 (PCV2) Infections: Clinical Signs, Pathology and Laboratory Diagnosis. Virus Res 164:10–19CrossRef
12.
go back to reference Klaumann F, Correa-Fiz F, Franzo G, Sibila M, Núñez JI, Segalés J (2018) Current knowledge on Porcine circovirus 3 (PCV-3): a novel virus with a yet unknown impact on the swine industry. Front Vet Sci 5:315CrossRef Klaumann F, Correa-Fiz F, Franzo G, Sibila M, Núñez JI, Segalés J (2018) Current knowledge on Porcine circovirus 3 (PCV-3): a novel virus with a yet unknown impact on the swine industry. Front Vet Sci 5:315CrossRef
13.
go back to reference Alomar J, Saporiti V, Pérez M, Gonçalvez D, Sibila M, Segalés J (2021) Multisystemic lymphoplasmacytic inflammation associated with PCV-3 in wasting pigs. Transbound Emerg Dis 68:2969–2974CrossRef Alomar J, Saporiti V, Pérez M, Gonçalvez D, Sibila M, Segalés J (2021) Multisystemic lymphoplasmacytic inflammation associated with PCV-3 in wasting pigs. Transbound Emerg Dis 68:2969–2974CrossRef
14.
go back to reference Saporiti V, Franzo G, Sibila M, Segalés J (2021) Porcine circovirus 3 (PCV-3) as a causal agent of disease in swine and a proposal of PCV-3 associated disease case definition. Transbound Emerg Dis 68:2936–2948CrossRef Saporiti V, Franzo G, Sibila M, Segalés J (2021) Porcine circovirus 3 (PCV-3) as a causal agent of disease in swine and a proposal of PCV-3 associated disease case definition. Transbound Emerg Dis 68:2936–2948CrossRef
15.
go back to reference Franzo G, Segalés J (2020) Porcine Circovirus 2 Genotypes, Immunity and Vaccines: Multiple Genotypes but One Single Serotype. Pathogens 9:1049CrossRef Franzo G, Segalés J (2020) Porcine Circovirus 2 Genotypes, Immunity and Vaccines: Multiple Genotypes but One Single Serotype. Pathogens 9:1049CrossRef
16.
go back to reference Streck AF, Truyen U (2020) Porcine Parvovirus. Curr Issues Mol Biol 37:33–46CrossRef Streck AF, Truyen U (2020) Porcine Parvovirus. Curr Issues Mol Biol 37:33–46CrossRef
17.
go back to reference Segalés J, Allan GM, Domingo M (2005) Porcine circovirus diseases. Anim Health Res Rev 6:119–142CrossRef Segalés J, Allan GM, Domingo M (2005) Porcine circovirus diseases. Anim Health Res Rev 6:119–142CrossRef
18.
go back to reference Oba P, Wieland B, Mwiine FN, Erume J, Gertzell E, Jacobson M, Dione MM (2020) Status and gaps of research on respiratory disease pathogens of swine in Africa. Porcine Health Manag 6:5CrossRef Oba P, Wieland B, Mwiine FN, Erume J, Gertzell E, Jacobson M, Dione MM (2020) Status and gaps of research on respiratory disease pathogens of swine in Africa. Porcine Health Manag 6:5CrossRef
20.
go back to reference Luka PD, Achenbach JE, Mwiine FN, Lamien CE, Shamaki D, Unger H, Erume J (2017) Genetic characterization of circulating African swine fever viruses in Nigeria (2007–2015). Transbound Emerg Dis 64:1598–1609CrossRef Luka PD, Achenbach JE, Mwiine FN, Lamien CE, Shamaki D, Unger H, Erume J (2017) Genetic characterization of circulating African swine fever viruses in Nigeria (2007–2015). Transbound Emerg Dis 64:1598–1609CrossRef
21.
go back to reference Adedeji AJ, Luka PD, Atai RB, Olubade TA, Hambolu DA, Ogunleye MA, Muwanika VB, Masembe C (2021) First-time presence of African swine fever virus Genotype II in Nigeria. Microbiol Resour Announc 10:e0035021CrossRef Adedeji AJ, Luka PD, Atai RB, Olubade TA, Hambolu DA, Ogunleye MA, Muwanika VB, Masembe C (2021) First-time presence of African swine fever virus Genotype II in Nigeria. Microbiol Resour Announc 10:e0035021CrossRef
22.
go back to reference Tizhe EV, Luka PD, Adedeji AJ, Tanko P, Gurumyen GY, Buba DM, Tizhe UD, Bitrus AA, Oragwa AO, Shaibu SJ, Unanam ES, Igbokwe IO, Akpavie SO, Njoku CO (2021) Laboratory diagnosis of a new outbreak of acute African swine fever in smallholder pig farms in Jos, Nigeria. Vet Med Sci 7:705–713CrossRef Tizhe EV, Luka PD, Adedeji AJ, Tanko P, Gurumyen GY, Buba DM, Tizhe UD, Bitrus AA, Oragwa AO, Shaibu SJ, Unanam ES, Igbokwe IO, Akpavie SO, Njoku CO (2021) Laboratory diagnosis of a new outbreak of acute African swine fever in smallholder pig farms in Jos, Nigeria. Vet Med Sci 7:705–713CrossRef
23.
go back to reference Adedeji AJ, Atai RB, Gyang HE, Gambo P, Habib MA, Weka R, Muwanika VB, Masembe C, Luka PD (2022) Live pig markets are hotspots for spread of African swine fever virus in Nigeria. Transbound Emerg Dis in press Adedeji AJ, Atai RB, Gyang HE, Gambo P, Habib MA, Weka R, Muwanika VB, Masembe C, Luka PD (2022) Live pig markets are hotspots for spread of African swine fever virus in Nigeria. Transbound Emerg Dis in press
24.
go back to reference Aiki-Raji CO, Adebiyi AI, Oluwayelu DO (2018) A slaughterhouse survey for porcine circovirus type 2 in commercial pigs in Ibadan, southwest Nigeria. Folia Vet 62:30–34CrossRef Aiki-Raji CO, Adebiyi AI, Oluwayelu DO (2018) A slaughterhouse survey for porcine circovirus type 2 in commercial pigs in Ibadan, southwest Nigeria. Folia Vet 62:30–34CrossRef
25.
go back to reference Eleazar AN, Takeet MI, Sonibare AO, Olufemi FO, Otesile EB (2020) Prevalence of porcine circovirus type 2 in naturally infected pigs in Abeokuta, Nigeria. Folia Vet 64:29–37CrossRef Eleazar AN, Takeet MI, Sonibare AO, Olufemi FO, Otesile EB (2020) Prevalence of porcine circovirus type 2 in naturally infected pigs in Abeokuta, Nigeria. Folia Vet 64:29–37CrossRef
26.
go back to reference Franzo G, Settypalli TBK, Agusi ER, Meseko C, Minoungou G, Ouoba BL, Habibata ZL, Wade A, de Barros JL, Tshilenge CG, Gelaye E, Yami M, Gizaw D, Chibssa TR, Anahory IV, Mapaco LP, Achá SJ, Ijomanta J, Jambol AR, Adedeji AJ, Luka PD, Shamaki D, Diop M, Bakhoum MT, Lo MM, Chang’a JS, Magidanga B, Mayenga C, Ziba MW, Dautu G, Masembe C, Achenbach J, Molini U, Cattoli G, Lamien CE, Dundon WG(2021) Porcine circovirus-2 in Africa: Identification of continent-specific clusters and evidence of independent viral introductions from Europe, North America and Asia. Transbound Emerg Dis in press Franzo G, Settypalli TBK, Agusi ER, Meseko C, Minoungou G, Ouoba BL, Habibata ZL, Wade A, de Barros JL, Tshilenge CG, Gelaye E, Yami M, Gizaw D, Chibssa TR, Anahory IV, Mapaco LP, Achá SJ, Ijomanta J, Jambol AR, Adedeji AJ, Luka PD, Shamaki D, Diop M, Bakhoum MT, Lo MM, Chang’a JS, Magidanga B, Mayenga C, Ziba MW, Dautu G, Masembe C, Achenbach J, Molini U, Cattoli G, Lamien CE, Dundon WG(2021) Porcine circovirus-2 in Africa: Identification of continent-specific clusters and evidence of independent viral introductions from Europe, North America and Asia. Transbound Emerg Dis in press
27.
go back to reference Adeola OA, Adeniji JA, Olugasa BO (2009) Isolation of influenza A viruses from pigs in Ibadan, Nigeria. Vet Ital 45:383–390 Adeola OA, Adeniji JA, Olugasa BO (2009) Isolation of influenza A viruses from pigs in Ibadan, Nigeria. Vet Ital 45:383–390
28.
go back to reference Meseko CA, Heidari A, Odaibo GN, Olaleye DO (2019) Complete genome sequencing of H1N1pdm09 swine influenza isolates from Nigeria reveals likely reverse zoonotic transmission at the human-animal interface in intensive piggery. Infect Ecol Epidemiol 9:1696632 Meseko CA, Heidari A, Odaibo GN, Olaleye DO (2019) Complete genome sequencing of H1N1pdm09 swine influenza isolates from Nigeria reveals likely reverse zoonotic transmission at the human-animal interface in intensive piggery. Infect Ecol Epidemiol 9:1696632
29.
go back to reference Duvigneau JC, Hartl RT, Groiss S, Gemeiner M (2005) Quantitative simultaneous multiplex real-time PCR for the detection of porcine cytokines. J Immunol Meth 306:16–27CrossRef Duvigneau JC, Hartl RT, Groiss S, Gemeiner M (2005) Quantitative simultaneous multiplex real-time PCR for the detection of porcine cytokines. J Immunol Meth 306:16–27CrossRef
30.
go back to reference King DP, Reid SM, Hutchings GH, Grierson SS, Wilkinson PJ, Dixon LK, Bastos AD, Drew TW (2003) Development of a TaqMan PCR assay with internal amplification control for the detection of African swine fever virus. J Virol Methods 107:53–61CrossRef King DP, Reid SM, Hutchings GH, Grierson SS, Wilkinson PJ, Dixon LK, Bastos AD, Drew TW (2003) Development of a TaqMan PCR assay with internal amplification control for the detection of African swine fever virus. J Virol Methods 107:53–61CrossRef
31.
go back to reference An DJ, Roh IS, Song DS, Park CK, Park BK (2007) Phylogenetic characterization of porcine circovirus type 2 in PMWS and PDNS Korean pigs between 1999 and 2006. Virus Res 129:115–122CrossRef An DJ, Roh IS, Song DS, Park CK, Park BK (2007) Phylogenetic characterization of porcine circovirus type 2 in PMWS and PDNS Korean pigs between 1999 and 2006. Virus Res 129:115–122CrossRef
32.
go back to reference Ku X, Chen F, Li P, Wang Y, Yu X, Fan S, Qian P, Wu M, He Q (2017) Identification and genetic characterization of porcine circovirus type 3 in China. Transbound Emerg Dis 64:703–708CrossRef Ku X, Chen F, Li P, Wang Y, Yu X, Fan S, Qian P, Wu M, He Q (2017) Identification and genetic characterization of porcine circovirus type 3 in China. Transbound Emerg Dis 64:703–708CrossRef
33.
go back to reference Abascal F, Zardoya R, Telford MJ (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucl Acid Res 38:W7–13CrossRef Abascal F, Zardoya R, Telford MJ (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucl Acid Res 38:W7–13CrossRef
35.
go back to reference Anahory IV, Franzo G, Settypalli TBK, Mapaco LP, Achá SJ, Molini U, Cattoli G, Lamien CE, Dundon WG(2021) Identification of porcine circovirus-3 in Mozambique. Vet. Res. Commun. 2021, in press Anahory IV, Franzo G, Settypalli TBK, Mapaco LP, Achá SJ, Molini U, Cattoli G, Lamien CE, Dundon WG(2021) Identification of porcine circovirus-3 in Mozambique. Vet. Res. Commun. 2021, in press
36.
go back to reference Afolabi KO, Iweriebor BC, Obi LC, Okoh AI (2019) Prevalence of porcine parvoviruses in some South African swine herds with background of porcine circovirus type 2 infection. Acta Trop 190:37–44CrossRef Afolabi KO, Iweriebor BC, Obi LC, Okoh AI (2019) Prevalence of porcine parvoviruses in some South African swine herds with background of porcine circovirus type 2 infection. Acta Trop 190:37–44CrossRef
37.
go back to reference Vlasakova M, Leskova V, Sliz I, Jackova A, Vilcek S (2014) The presence of six potentially pathogenic viruses in pigs suffering from post-weaning multisystemic wasting syndrome. BMC Vet Res 10:221CrossRef Vlasakova M, Leskova V, Sliz I, Jackova A, Vilcek S (2014) The presence of six potentially pathogenic viruses in pigs suffering from post-weaning multisystemic wasting syndrome. BMC Vet Res 10:221CrossRef
38.
go back to reference Zeng Z, Liu Z, Wang W, Tang D, Liang H, Liu Z (2014) Establishment and application of a multiplex PCR for rapid and simultaneous detection of six viruses in swine. J Virol Methods 208:102–106CrossRef Zeng Z, Liu Z, Wang W, Tang D, Liang H, Liu Z (2014) Establishment and application of a multiplex PCR for rapid and simultaneous detection of six viruses in swine. J Virol Methods 208:102–106CrossRef
39.
go back to reference Peswani AR, Narkpuk J, Krueger A, Bracewell DG, Lekcharoensuk P, Haslam SM, Dell A, Jaru-Ampornpan P, Robinson C (2022) Novel constructs and 1-step chromatography protocols for the production of Porcine Circovirus 2d (PCV2d) and Circovirus 3 (PCV3) subunit vaccine candidates. Food Bioprod Process 131:125–135CrossRef Peswani AR, Narkpuk J, Krueger A, Bracewell DG, Lekcharoensuk P, Haslam SM, Dell A, Jaru-Ampornpan P, Robinson C (2022) Novel constructs and 1-step chromatography protocols for the production of Porcine Circovirus 2d (PCV2d) and Circovirus 3 (PCV3) subunit vaccine candidates. Food Bioprod Process 131:125–135CrossRef
40.
go back to reference Kixmöller M, Ritzmann M, Eddicks M, Saalmüller A, Elbers K, Fachinger V (2008) Reduction of PMWS-associated clinical signs and co-infections by vaccination against PCV2. Vaccine 26:3443–3451CrossRef Kixmöller M, Ritzmann M, Eddicks M, Saalmüller A, Elbers K, Fachinger V (2008) Reduction of PMWS-associated clinical signs and co-infections by vaccination against PCV2. Vaccine 26:3443–3451CrossRef
Metadata
Title
Coinfections of African swine fever virus, porcine circovirus 2 and 3, and porcine parvovirus 1 in swine in Nigeria
Authors
Pam Dachung Luka
Adeyinka Jeremy Adedeji
Anvou R. Jambol
Isioma V. Ifende
Helen G. Luka
Nyam D. Choji
Rebecca Weka
Tirumala B.K. Settypalli
Jenna E. Achenbach
Giovanni Cattoli
Charles E. Lamien
Umberto Molini
Giovanni Franzo
William G. Dundon
Publication date
22-09-2022
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 12/2022
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-022-05593-6

Other articles of this Issue 12/2022

Archives of Virology 12/2022 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.