Skip to main content
Top
Published in: Archives of Virology 5/2017

01-05-2017 | Brief Report

Complete nucleotide sequence of clematis chlorotic mottle virus, a new member of the family Tombusviridae

Authors: Margaret McLaughlin, Ben Lockhart, Ramon Jordan, Geoff Denton, Dimitre Mollov

Published in: Archives of Virology | Issue 5/2017

Login to get access

Abstract

Clematis chlorotic mottle virus (ClCMV) is a previously undescribed virus associated with symptoms of yellow mottling and veining, chlorotic ring spots, line pattern mosaics, and flower distortion and discoloration on ornamental Clematis. The ClCMV genome is 3,880 nt in length with five open reading frames (ORFs) encoding a 27-kDa protein (ORF 1), an 87-kDa replicase protein (ORF 2), two centrally located movement proteins (ORF 3 and 4), and a 37-kDa capsid protein (ORF 5). Based on morphological, genomic, and phylogenetic analysis, ClCMV is predicted to be a member of the genus Pelarspovirus in the family Tombusviridae.
Appendix
Available only for authorised users
Literature
1.
go back to reference Altschul SF, Madden TL, Schäffer AA et al (1997) Gapped BLAST and PSI-BLAST:a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402CrossRefPubMedPubMedCentral Altschul SF, Madden TL, Schäffer AA et al (1997) Gapped BLAST and PSI-BLAST:a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402CrossRefPubMedPubMedCentral
2.
3.
go back to reference Chatzivassiliou EK, Boubourakas I, Drossos E et al (2002) Weeds in greenhouses and tobacco fields are differentially infected by tomato spotted wilt virus and infested by its vector species. Plant Dis 85:40–46CrossRef Chatzivassiliou EK, Boubourakas I, Drossos E et al (2002) Weeds in greenhouses and tobacco fields are differentially infected by tomato spotted wilt virus and infested by its vector species. Plant Dis 85:40–46CrossRef
6.
go back to reference Guy PL (2006) Effects and incidence of Cucumber mosaic virus, Watermelon mosaic virus and Zucchini yellow mosaic virus in New Zealand’s only native cucurbit, Sicyos australis. Aust Plant Pathol 35:29–35CrossRef Guy PL (2006) Effects and incidence of Cucumber mosaic virus, Watermelon mosaic virus and Zucchini yellow mosaic virus in New Zealand’s only native cucurbit, Sicyos australis. Aust Plant Pathol 35:29–35CrossRef
7.
go back to reference Jiwan SD, Wu B, White KA (2011) Subgenomic mRNA transcription in Tombusviridae. RNA Biology 8(2):287–294CrossRefPubMed Jiwan SD, Wu B, White KA (2011) Subgenomic mRNA transcription in Tombusviridae. RNA Biology 8(2):287–294CrossRefPubMed
8.
go back to reference Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:msw054. doi:10.1093/molbev/msw054 Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:msw054. doi:10.​1093/​molbev/​msw054
9.
go back to reference Mollov D, Lockhart B, Phibbs A, Creswell T, Ruhl G, Dorman E, Kinard G, Jordan R (2014) Clematis chlorotic mottle virus, a novel virus occurring in clematis in the USA. Phyopathology 104(S3):81 Mollov D, Lockhart B, Phibbs A, Creswell T, Ruhl G, Dorman E, Kinard G, Jordan R (2014) Clematis chlorotic mottle virus, a novel virus occurring in clematis in the USA. Phyopathology 104(S3):81
10.
go back to reference Mollov D, Lockhart B, Zlesak D (2013) Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae. Arch Virol 158:1917–1923CrossRefPubMed Mollov D, Lockhart B, Zlesak D (2013) Complete nucleotide sequence of rose yellow mosaic virus, a novel member of the family Potyviridae. Arch Virol 158:1917–1923CrossRefPubMed
11.
go back to reference Nakagawa S, Niimura Y, Gojobori T et al (2008) Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Res 36(3):861–871CrossRefPubMed Nakagawa S, Niimura Y, Gojobori T et al (2008) Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Res 36(3):861–871CrossRefPubMed
13.
go back to reference Rochon D, Rubino L, Russo M et al (2012) Virus taxonomy. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy, 9th edn. Elsevier, Amsterdam, pp 1111–1138 Rochon D, Rubino L, Russo M et al (2012) Virus taxonomy. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy, 9th edn. Elsevier, Amsterdam, pp 1111–1138
14.
go back to reference Scheets K, Jordan R, White KA, Hernandez C (2015) Pelarspovirus, a proposed new genus in the family Tombusviridae. Arch Virol 160:2385–2393CrossRefPubMed Scheets K, Jordan R, White KA, Hernandez C (2015) Pelarspovirus, a proposed new genus in the family Tombusviridae. Arch Virol 160:2385–2393CrossRefPubMed
15.
go back to reference Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680CrossRefPubMedPubMedCentral Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680CrossRefPubMedPubMedCentral
16.
go back to reference Wang W-T (2000) Notes on the genus Clematis (Ranunculaceae). Acta Phytotaxon Sin 38:305–336 Wang W-T (2000) Notes on the genus Clematis (Ranunculaceae). Acta Phytotaxon Sin 38:305–336
Metadata
Title
Complete nucleotide sequence of clematis chlorotic mottle virus, a new member of the family Tombusviridae
Authors
Margaret McLaughlin
Ben Lockhart
Ramon Jordan
Geoff Denton
Dimitre Mollov
Publication date
01-05-2017
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 5/2017
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-017-3236-1

Other articles of this Issue 5/2017

Archives of Virology 5/2017 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.