Skip to main content
Top
Published in: Archives of Virology 6/2011

01-06-2011 | Annotated Sequence Record

A novel Tuber aestivum (Vittad.) mitovirus

Authors: Benjamin Stielow, Hans-Peter Klenk, Stephan Winter, Wulf Menzel

Published in: Archives of Virology | Issue 6/2011

Login to get access

Excerpt

Double-stranded RNA (dsRNA) viruses have been reported from major phyla of the fungal kingdom [8, 11]. Mycovirus infections have been associated with obvious disease symptoms but often remain symptomless [3, 8, 11]. Fungal viruses are known from eleven families: Barnaviridae, Birnaviridae, Chrysoviridae, Cystoviridae, Hypoviridae, Metaviridae, Narnaviridae, Partitiviridae, Reoviridae, Totiviridae and recently also Endornaviridae [1, 8, 11, 14, 15]. The simplest mycoviruses are assigned to the genera Mitovirus and Narnavirus (family Narnaviridae). Members of both genera lack coat proteins, and their linear genomes are characterized by a single open reading frame (ORF) coding for a viral RNA-dependent RNA polymerase (RdRp). Mitoviruses, in contrast to cytoplasmatic narnaviruses, seem to replicate in strict association with mitochondria [2, 8, 11, 12]. Common characteristic features of all mitochondrial viruses are 5′- and 3′-terminal untranslated regions (UTRs) of variable length. It has been suggested that these terminal residues act as stem-loop structures for RdRp recognition and initiation of replication [3, 4]. Mitoviruses have attracted significant attention, as they trigger fungal hypovirulence and phenotypic changes such as reduced growth, sporulation and pigmentation [36, 13, 20]. Most mitoviruses are known from phytopathogenic fungal genera only, such as Ophiostoma, Cryphonectria, and Botrytis, and a few from Gremmeniella, Sclerotinia, Thanatephorus, Thielaviopsis, Helicobasidium and the arbuscular mycorrhizae Glomus [46, 11, 1921]. The development of biological control agents against fungal pathogens using mycoviruses has attracted significant scientific attention, whereas the exploration of virus diversity in non-pathogenic fungi has been widely neglected [15, 16]. In this paper, we report the third known virus infecting the ectomycorrhizal fungus Tuber aestivum Vittad. The genome described here is the largest one known in the genus Mitovirus, and based on its host, the name Tuber aestivum mitovirus (TaMV) is proposed. Genome characteristics are highly similar to those of other known mitoviruses, including a single ORF encoding a viral RdRp as well as typical 5′ and 3′ UTRs. …
Literature
1.
go back to reference Carstens EB, Ball IA (2009) Ratification vote on taxonomic proposals to the international committee on taxonomy of viruses (2008). Arch Virol 154:1181–1188PubMedCrossRef Carstens EB, Ball IA (2009) Ratification vote on taxonomic proposals to the international committee on taxonomy of viruses (2008). Arch Virol 154:1181–1188PubMedCrossRef
2.
go back to reference Cole TE, Hong Y, Brasier CM, Buck KW (2000) Detection of an RNA-dependent RNA polymerase in mitochondria from a mitovirus-infected isolate of the Dutch Elm disease fungus, Ophiostoma novo-ulmi. Virology 268:239–243PubMedCrossRef Cole TE, Hong Y, Brasier CM, Buck KW (2000) Detection of an RNA-dependent RNA polymerase in mitochondria from a mitovirus-infected isolate of the Dutch Elm disease fungus, Ophiostoma novo-ulmi. Virology 268:239–243PubMedCrossRef
3.
go back to reference Deng F, Xu R, Boland GJ (2003) Hypovirulence-associated double-stranded RNA from Sclerotinia homoeocarpa is conspecific with Ophiostoma novo-ulmi mitovirus 3a-ld. Virology 93:1407–1414 Deng F, Xu R, Boland GJ (2003) Hypovirulence-associated double-stranded RNA from Sclerotinia homoeocarpa is conspecific with Ophiostoma novo-ulmi mitovirus 3a-ld. Virology 93:1407–1414
4.
go back to reference Deng F, Boland GJ (2004) A satellite RNA of Ophiostoma novo-ulmi mitovirus 3a in hypovirulent isolates of Sclerotinia homoeocarpa. Virology 94:917–923 Deng F, Boland GJ (2004) A satellite RNA of Ophiostoma novo-ulmi mitovirus 3a in hypovirulent isolates of Sclerotinia homoeocarpa. Virology 94:917–923
5.
go back to reference Deng F, Boland GJ (2006) Attenuation of virulence in Sclerotinia homoeocarpa during storage is associated with latent infection by Ophiostoma mitovirus 3a. Eur J Plant Pathol 114:127–137CrossRef Deng F, Boland GJ (2006) Attenuation of virulence in Sclerotinia homoeocarpa during storage is associated with latent infection by Ophiostoma mitovirus 3a. Eur J Plant Pathol 114:127–137CrossRef
6.
go back to reference Doherty M, Coutts RHA, Brasier CM, Buck KW (2006) Sequence of RNA-dependent RNA polymerase genes provides evidence for three more distinct mitoviruses in Ophiostoma novo-ulmi isolate ld. Virus Genes 33:41–44PubMedCrossRef Doherty M, Coutts RHA, Brasier CM, Buck KW (2006) Sequence of RNA-dependent RNA polymerase genes provides evidence for three more distinct mitoviruses in Ophiostoma novo-ulmi isolate ld. Virus Genes 33:41–44PubMedCrossRef
7.
go back to reference Froussard P (1992) A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20:2900PubMedCrossRef Froussard P (1992) A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20:2900PubMedCrossRef
8.
9.
go back to reference Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511–518PubMedCrossRef Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33:511–518PubMedCrossRef
10.
go back to reference Menotta M, Amicucci A, Sisti D, Gioacchini AM, Stochii V (2004) Differential gene expression during pre-symbiotic interaction between Tuber borchii Vittad and Tilia Americana L. Curr Gent 46:158–165 Menotta M, Amicucci A, Sisti D, Gioacchini AM, Stochii V (2004) Differential gene expression during pre-symbiotic interaction between Tuber borchii Vittad and Tilia Americana L. Curr Gent 46:158–165
11.
go back to reference Nuss D (2005) Hypovirulence: mycoviruses at the fungal-plant interface. Nat Rev 3:632–642CrossRef Nuss D (2005) Hypovirulence: mycoviruses at the fungal-plant interface. Nat Rev 3:632–642CrossRef
12.
go back to reference Park Y, Chen X, Punja ZK (2006) Molecular and biological characterization of a mitovirus in Chalara elegans (Thielaviopsis basicola). Phytopathology 96:468–479PubMedCrossRef Park Y, Chen X, Punja ZK (2006) Molecular and biological characterization of a mitovirus in Chalara elegans (Thielaviopsis basicola). Phytopathology 96:468–479PubMedCrossRef
13.
go back to reference Papp T, Nyilasi I, Fekete C, Ferenczy L, Vágvölgyi C (2001) Presence of double-stranded RNA and virus-like particles in Rhizopus isolates. Can J Micobiol 47:443–447 Papp T, Nyilasi I, Fekete C, Ferenczy L, Vágvölgyi C (2001) Presence of double-stranded RNA and virus-like particles in Rhizopus isolates. Can J Micobiol 47:443–447
14.
go back to reference Pearson MN, Beever RE, Boine B, Arthur K (2009) Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol 10:115–128PubMedCrossRef Pearson MN, Beever RE, Boine B, Arthur K (2009) Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol 10:115–128PubMedCrossRef
15.
go back to reference Stielow B, Klenk HP, Menzel W (2011) Complete genome sequence of the first endornavirus from the ascocarp of the ectomycorrhizal fungus Tuber aestivum Vittad. Arch Virol 156:343–345PubMedCrossRef Stielow B, Klenk HP, Menzel W (2011) Complete genome sequence of the first endornavirus from the ascocarp of the ectomycorrhizal fungus Tuber aestivum Vittad. Arch Virol 156:343–345PubMedCrossRef
16.
go back to reference Stielow B, Menzel W (2010) Complete nucleotide sequence of TaV1, a novel totivirus isolated from a black truffle ascocarp (Tuber aestivum Vittad.). Arch Virol 155:2075–2078PubMedCrossRef Stielow B, Menzel W (2010) Complete nucleotide sequence of TaV1, a novel totivirus isolated from a black truffle ascocarp (Tuber aestivum Vittad.). Arch Virol 155:2075–2078PubMedCrossRef
17.
go back to reference Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (submitted) Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (submitted)
18.
go back to reference Valverde RA, Dodds JA, Heick JA (1985) Double-stranded ribonucleic acid from plants infected with viruses having elongated particles and undivided genomes. Phytopathology 76:459–465CrossRef Valverde RA, Dodds JA, Heick JA (1985) Double-stranded ribonucleic acid from plants infected with viruses having elongated particles and undivided genomes. Phytopathology 76:459–465CrossRef
19.
go back to reference Wu MD, Zhang L, Jiang DH, Hou MS, Huang HC (2007) Hypovirulence and double stranded RNA in Botrytis cinerea. Phytopathology 97:1590–1599PubMedCrossRef Wu MD, Zhang L, Jiang DH, Hou MS, Huang HC (2007) Hypovirulence and double stranded RNA in Botrytis cinerea. Phytopathology 97:1590–1599PubMedCrossRef
20.
go back to reference Xie J, Wei D, Jiang D, Fu Y, Li G, Ghabrial S, Peng Y (2006) Characterization of debilitation-associated mycovirus infecting the plant-pathogenic fungus Sclerotinia sclerotiorum. J Gen Virol 87:241–249PubMedCrossRef Xie J, Wei D, Jiang D, Fu Y, Li G, Ghabrial S, Peng Y (2006) Characterization of debilitation-associated mycovirus infecting the plant-pathogenic fungus Sclerotinia sclerotiorum. J Gen Virol 87:241–249PubMedCrossRef
21.
go back to reference Zhang L, Fu Y, Xie J, Jiang D, Li G, Yi X (2009) A novel virus that infecting hypovirulent strain XG36-1 of plant fungal pathogen Sclerotinia sclerotiorum. Virol J 6:96PubMedCrossRef Zhang L, Fu Y, Xie J, Jiang D, Li G, Yi X (2009) A novel virus that infecting hypovirulent strain XG36-1 of plant fungal pathogen Sclerotinia sclerotiorum. Virol J 6:96PubMedCrossRef
Metadata
Title
A novel Tuber aestivum (Vittad.) mitovirus
Authors
Benjamin Stielow
Hans-Peter Klenk
Stephan Winter
Wulf Menzel
Publication date
01-06-2011
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 6/2011
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-0998-8

Other articles of this Issue 6/2011

Archives of Virology 6/2011 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine