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Published in: Archives of Virology 1/2010

01-01-2010 | Brief Review

Characterization of hydrangea chlorotic mottle virus, a new member of the genus Carlavirus

Authors: Joe Tang, Scott J. Harper, Ting Wei, Gerard R. G. Clover

Published in: Archives of Virology | Issue 1/2010

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Abstract

An isolate of the tentative carlavirus species Hydrangea chlorotic mottle virus (HdCMV) was found in New Zealand (NZ) in 2007. The host range, serological properties and complete genome sequence of this isolate were determined in this study. While the NZ isolate shared 98% nucleotide sequence identity with the US isolate of HdCMV, differences in titre and host range were found. The HdCMV-NZ genome sequence of 8,433 nt possessed a typical carlavirus organisation with six open reading frames. HdCMV is most closely related (60.4% nt identity) to blueberry scorch virus, a relationship also suggested by serology. These data suggest that HdCMV is a new carlavirus species.
Literature
1.
go back to reference Adams AN, Barbara DJ (1982) Host range, purification and some properties of two carlaviruses from hop (Humulus lupulus): hop latent and American hop latent. Ann Appl Biol 101:483–494CrossRef Adams AN, Barbara DJ (1982) Host range, purification and some properties of two carlaviruses from hop (Humulus lupulus): hop latent and American hop latent. Ann Appl Biol 101:483–494CrossRef
2.
go back to reference Adams MJ, Accotto GP, Agranovsky AA, Bar-Joseph M, Boscia DAAB, Candresse T, Coutts RHA, Dolja VV, Falk BW, Foster GD, Gonsalves D, Jelkmann W, Karasev A, Martelli GP, Mawassi M, Milne RG, Minafra A, Namba SAR, Vetten HJ, Vishnichenko VK, Wisler GC, Yoshikawa N, Zavriev SK (2005) Flexiviridae. Virus Taxonomy, VIIIth Report of the ICTV Elsevier/Academic Press, London, pp 1089-1124 Adams MJ, Accotto GP, Agranovsky AA, Bar-Joseph M, Boscia DAAB, Candresse T, Coutts RHA, Dolja VV, Falk BW, Foster GD, Gonsalves D, Jelkmann W, Karasev A, Martelli GP, Mawassi M, Milne RG, Minafra A, Namba SAR, Vetten HJ, Vishnichenko VK, Wisler GC, Yoshikawa N, Zavriev SK (2005) Flexiviridae. Virus Taxonomy, VIIIth Report of the ICTV Elsevier/Academic Press, London, pp 1089-1124
3.
go back to reference Allen TC, McMorran JP, Locatelli EA (1983) Isolation of Tomato spotted wilt virus from Hydrangea and four weed species. Plant Dis 67:429–431CrossRef Allen TC, McMorran JP, Locatelli EA (1983) Isolation of Tomato spotted wilt virus from Hydrangea and four weed species. Plant Dis 67:429–431CrossRef
4.
go back to reference Allen TC, McMorran JP, Lawson RH (1985) Detection and identification of viruses in Hydrangea. Acta Hortic 164:85–89 Allen TC, McMorran JP, Lawson RH (1985) Detection and identification of viruses in Hydrangea. Acta Hortic 164:85–89
5.
go back to reference Badge J, Brunt A, Carson R, Dagless E, Karamagioli M, Phillips S, Seal S, Turner R, Foster GD (1996) A carlavirus-specific PCR primer and partial nucleotide sequence provides further evidence for the recognition of Cowpea mild mottle virus as a whitefly-transmitted carlavirus. Eur J Plant Pathol 102:305–310CrossRef Badge J, Brunt A, Carson R, Dagless E, Karamagioli M, Phillips S, Seal S, Turner R, Foster GD (1996) A carlavirus-specific PCR primer and partial nucleotide sequence provides further evidence for the recognition of Cowpea mild mottle virus as a whitefly-transmitted carlavirus. Eur J Plant Pathol 102:305–310CrossRef
6.
go back to reference Cavileer TD, Halpern BT, Lawrence DM, Podleckis EV, Martin RR, Hillman BI (1994) Nucleotide sequence of the carlavirus associated with blueberry scorch and similar diseases. J Gen Virol 75:711–720CrossRefPubMed Cavileer TD, Halpern BT, Lawrence DM, Podleckis EV, Martin RR, Hillman BI (1994) Nucleotide sequence of the carlavirus associated with blueberry scorch and similar diseases. J Gen Virol 75:711–720CrossRefPubMed
7.
go back to reference Cerbah M, Morteau E, Brown S, Siljak-Yakolev S, Bertrand H, Lambert C (2001) Genome size variation and species relationships in the genus Hydrangea. Theor Appl Genet 103:45–51CrossRef Cerbah M, Morteau E, Brown S, Siljak-Yakolev S, Bertrand H, Lambert C (2001) Genome size variation and species relationships in the genus Hydrangea. Theor Appl Genet 103:45–51CrossRef
8.
go back to reference Chiko AW, Godkin SE (1986) Occurrence of Alfalfa mosaic, Hydrangea ringspot, and Tobacco ringspot viruses in Hydrangea spp in British Colombia. Plant Dis 70:541–544CrossRef Chiko AW, Godkin SE (1986) Occurrence of Alfalfa mosaic, Hydrangea ringspot, and Tobacco ringspot viruses in Hydrangea spp in British Colombia. Plant Dis 70:541–544CrossRef
9.
go back to reference Choi SA, Ryu KH (2003) The complete nucleotide sequence of the genome RNA of Lily symptomless virus and its comparison with that of other carlaviruses. Arch Virol 148:1943–1955CrossRefPubMed Choi SA, Ryu KH (2003) The complete nucleotide sequence of the genome RNA of Lily symptomless virus and its comparison with that of other carlaviruses. Arch Virol 148:1943–1955CrossRefPubMed
10.
go back to reference Cohen J, Zeidan M, Rosner A, Gera A (2000) Biological and molecular characterisation of a new carlavirus isolated from an Aconitum sp. Phytopathology 90:340–344CrossRefPubMed Cohen J, Zeidan M, Rosner A, Gera A (2000) Biological and molecular characterisation of a new carlavirus isolated from an Aconitum sp. Phytopathology 90:340–344CrossRefPubMed
11.
go back to reference Hataya T, Uchino K, Arimoto R, Suda N, Sano T, Shikata E, Uyeda I (2000) Molecular characterisation of Hop latent virus and phylogenetic relationships among viruses closely related to carlaviruses. Arch Virol 145:2503–2524CrossRefPubMed Hataya T, Uchino K, Arimoto R, Suda N, Sano T, Shikata E, Uyeda I (2000) Molecular characterisation of Hop latent virus and phylogenetic relationships among viruses closely related to carlaviruses. Arch Virol 145:2503–2524CrossRefPubMed
12.
go back to reference Hill SA (1984) Methods in plant virology. Blackwell, Oxford Hill SA (1984) Methods in plant virology. Blackwell, Oxford
13.
go back to reference Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28:375–430CrossRefPubMed Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28:375–430CrossRefPubMed
14.
go back to reference Lawson RH (1995) Hydrangea. In: Loebenstein G, Lawson RH, Brunt AA (eds) Virus and virus-like diseases of bulb and flower crops. Wiley, Chichester, pp 482–492 Lawson RH (1995) Hydrangea. In: Loebenstein G, Lawson RH, Brunt AA (eds) Virus and virus-like diseases of bulb and flower crops. Wiley, Chichester, pp 482–492
15.
go back to reference Li R, Mock R (2008) Characterisation of a flowering cherry strain of Cherry necrotic rusty mottle virus. Arch Virol 153:973–978CrossRefPubMed Li R, Mock R (2008) Characterisation of a flowering cherry strain of Cherry necrotic rusty mottle virus. Arch Virol 153:973–978CrossRefPubMed
16.
go back to reference Machado Caballero JE, Lockhart BE, Mason SL, Daughtrey M (2009) Identification and properties of a carlavirus causing chlorotic mottle of florists’ hydrangea (H. macrophylla) in the United States. Plant Dis 93:891–895CrossRef Machado Caballero JE, Lockhart BE, Mason SL, Daughtrey M (2009) Identification and properties of a carlavirus causing chlorotic mottle of florists’ hydrangea (H. macrophylla) in the United States. Plant Dis 93:891–895CrossRef
17.
go back to reference Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21:260–262CrossRefPubMed Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21:260–262CrossRefPubMed
18.
go back to reference Milne RG, Djelouah K, Garcia JA, Dal Bo E, Grau O (1996) Structure of citrus ringspot psorosis virus associated particles: Implications for diagnosis and taxonomy. In: Proceedings of the 13th Conference of the International Organisation of Citrus Virologists, pp 189-197 Milne RG, Djelouah K, Garcia JA, Dal Bo E, Grau O (1996) Structure of citrus ringspot psorosis virus associated particles: Implications for diagnosis and taxonomy. In: Proceedings of the 13th Conference of the International Organisation of Citrus Virologists, pp 189-197
19.
go back to reference Rozanov MN, Koonin EV, Gorbalenya AE (1992) Conservation of the putative methyltransferase domain: a hallmark of the ‘Sindbis-like’ supergroup of positive-strand RNA viruses. J Gen Virol 73:2129–2134CrossRefPubMed Rozanov MN, Koonin EV, Gorbalenya AE (1992) Conservation of the putative methyltransferase domain: a hallmark of the ‘Sindbis-like’ supergroup of positive-strand RNA viruses. J Gen Virol 73:2129–2134CrossRefPubMed
20.
go back to reference Scott SW, Zimmermann MT, Ge X (2003) Viruses in subgroup 2 of the genus Ilarvirus share both serological relationships and characteristics at the molecular level. Arch Virol 148:2063–2075CrossRefPubMed Scott SW, Zimmermann MT, Ge X (2003) Viruses in subgroup 2 of the genus Ilarvirus share both serological relationships and characteristics at the molecular level. Arch Virol 148:2063–2075CrossRefPubMed
21.
go back to reference Scott SW, Zimmermann MT (2008) The complete sequence of Ligustrum necrotic ringspot virus, a novel carlavirus. Arch Virol 153:393–396CrossRefPubMed Scott SW, Zimmermann MT (2008) The complete sequence of Ligustrum necrotic ringspot virus, a novel carlavirus. Arch Virol 153:393–396CrossRefPubMed
22.
go back to reference Spiegel S, Zeidan M, Sobolev I, Beckelman Y, Holdengreber V, Tam Y, Bar-Joseph M, Lipsker Z, Gera A (2007) The complete nucleotide sequence of Passiflora latent virus and its phylogenetic relationship to other carlaviruses. Arch Virol 152:181–189CrossRefPubMed Spiegel S, Zeidan M, Sobolev I, Beckelman Y, Holdengreber V, Tam Y, Bar-Joseph M, Lipsker Z, Gera A (2007) The complete nucleotide sequence of Passiflora latent virus and its phylogenetic relationship to other carlaviruses. Arch Virol 152:181–189CrossRefPubMed
23.
go back to reference Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 10:1093 Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 10:1093
24.
go back to reference Thomas BJ, Barton RJ, Tuszynski A (1983) Hydrangea mosaic virus, a new ilarvirus from Hydrangea macrophylla (Saxifragaceae). Ann Appl Biol 193:261–270CrossRef Thomas BJ, Barton RJ, Tuszynski A (1983) Hydrangea mosaic virus, a new ilarvirus from Hydrangea macrophylla (Saxifragaceae). Ann Appl Biol 193:261–270CrossRef
25.
go back to reference van der Vlugt RAA, Berendsen M (2002) Development of a general Potexvirus detection method. Eur J Plant Pathol 108:367–371CrossRef van der Vlugt RAA, Berendsen M (2002) Development of a general Potexvirus detection method. Eur J Plant Pathol 108:367–371CrossRef
Metadata
Title
Characterization of hydrangea chlorotic mottle virus, a new member of the genus Carlavirus
Authors
Joe Tang
Scott J. Harper
Ting Wei
Gerard R. G. Clover
Publication date
01-01-2010
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 1/2010
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-009-0541-3

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