Skip to main content
Top
Published in: Archives of Virology 9/2009

01-09-2009 | Brief Report

The complete genome sequence of Triticum mosaic virus, a new wheat-infecting virus of the High Plains

Authors: John P. Fellers, Dallas Seifers, Marietta Ryba-White, T. Joe Martin

Published in: Archives of Virology | Issue 9/2009

Login to get access

Abstract

The genome of Triticum mosaic virus (TriMV), a recently discovered mite-transmitted wheat potyvirus, was sequenced, characterized, and compared to other members of the family Potyviridae. TriMV has a single mRNA strand of 10,266 nucleotides with a predicted polyprotein consisting of 3,112 peptides. Protein alignments of the coat protein demonstrate that TriMV has 45.9% identity to Sugarcane streak mosaic virus strain AP (SCSMV-AP), but shares only 23.2% identity to Wheat streak mosaic virus. Although TriMV is mite-transmitted and could be placed in the genus Tritimovirus, it is significantly divergent and should be placed in the newly proposed genus Susmovirus.
Literature
1.
go back to reference Altschul SF, Madden TL, Schäffer AA et al (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25:3389–3402PubMedCrossRef Altschul SF, Madden TL, Schäffer AA et al (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25:3389–3402PubMedCrossRef
2.
go back to reference Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Molec Plant Path 6:471–487CrossRef Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Molec Plant Path 6:471–487CrossRef
3.
go back to reference Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479PubMedCrossRef Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479PubMedCrossRef
4.
go back to reference Carrasco P, Daros JA, Agudelo-Romero P, Elena SF (2007) A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments. J Virol Methods 139:181–188PubMedCrossRef Carrasco P, Daros JA, Agudelo-Romero P, Elena SF (2007) A real-time RT-PCR assay for quantifying the fitness of Tobacco etch virus in competition experiments. J Virol Methods 139:181–188PubMedCrossRef
5.
go back to reference Carrington JC, Dougherty WG (1988) A viral cleavage site cassette: Identification of amino acid sequences required for Tobacco etch virus polyprotein processing. Proc Nat Acad Sci USA 85:3391–3395PubMedCrossRef Carrington JC, Dougherty WG (1988) A viral cleavage site cassette: Identification of amino acid sequences required for Tobacco etch virus polyprotein processing. Proc Nat Acad Sci USA 85:3391–3395PubMedCrossRef
6.
go back to reference Carrington JC, Cary SM, Parks TD, Dougherty WG (1989) A second proteinase encoded by a plant potyviral genome. EMBO J 8:365–370PubMed Carrington JC, Cary SM, Parks TD, Dougherty WG (1989) A second proteinase encoded by a plant potyviral genome. EMBO J 8:365–370PubMed
7.
go back to reference Chen J, Chen J, Adams MJ (2002) Characterization of potyviruses from sugarcane and maize in China. Arch Virol 147:1237–1246PubMedCrossRef Chen J, Chen J, Adams MJ (2002) Characterization of potyviruses from sugarcane and maize in China. Arch Virol 147:1237–1246PubMedCrossRef
8.
go back to reference Colinet D, Kummert J, Lepoivre P (1998) The nucleotide sequence and genome organization of the whitefly transmitted Sweet potato mild mottle virus: a close relationship. Virus Res 53:187–196PubMedCrossRef Colinet D, Kummert J, Lepoivre P (1998) The nucleotide sequence and genome organization of the whitefly transmitted Sweet potato mild mottle virus: a close relationship. Virus Res 53:187–196PubMedCrossRef
9.
go back to reference Dougherty WG, Cary SM, Parks TD (1989) Molecular genetic analysis of a plant virus polyprotein cleavage site: a model. Virology 171:356–365PubMedCrossRef Dougherty WG, Cary SM, Parks TD (1989) Molecular genetic analysis of a plant virus polyprotein cleavage site: a model. Virology 171:356–365PubMedCrossRef
10.
go back to reference French R, Stenger D (2005) Genome sequences of Agropyron mosaic virus and Hordeum mosaic virus support reciprocal monophyly of the genera Potyvirus and Rymovirus. Arch Virol 150:213–299CrossRef French R, Stenger D (2005) Genome sequences of Agropyron mosaic virus and Hordeum mosaic virus support reciprocal monophyly of the genera Potyvirus and Rymovirus. Arch Virol 150:213–299CrossRef
11.
go back to reference Fuji S, Nakamae H (2000) Complete nucleotide sequence of the genomic RNA of a mild strain of Japanese yam mosaic potyvirus. Arch Virol 145:635–640PubMedCrossRef Fuji S, Nakamae H (2000) Complete nucleotide sequence of the genomic RNA of a mild strain of Japanese yam mosaic potyvirus. Arch Virol 145:635–640PubMedCrossRef
12.
go back to reference Gargarinova AG, Babu M, Poysa V, Hill JH, Wang A (2008) Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differing their ability to overcome Rsv4 resistance. Virus Res 138:50–56CrossRef Gargarinova AG, Babu M, Poysa V, Hill JH, Wang A (2008) Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differing their ability to overcome Rsv4 resistance. Virus Res 138:50–56CrossRef
13.
go back to reference Gotz R, Maiss E (1995) The complete nucleotide sequence and genome organization of the mite-transmitted Brome streak mosaic Rymovirus in comparison with those of Potyviruses. J Gen Virol 76:2035–2042PubMedCrossRef Gotz R, Maiss E (1995) The complete nucleotide sequence and genome organization of the mite-transmitted Brome streak mosaic Rymovirus in comparison with those of Potyviruses. J Gen Virol 76:2035–2042PubMedCrossRef
14.
go back to reference Hema M, Joseph J, Gopinath K, Sreenivasulu P, Savithri HS (1999) Molecular characterization and interviral relationships of a flexuous filamentous virus causing mosaic disease of sugarcane (Saccharum officinarum L.) in India. Arch Virol 144:479–490PubMedCrossRef Hema M, Joseph J, Gopinath K, Sreenivasulu P, Savithri HS (1999) Molecular characterization and interviral relationships of a flexuous filamentous virus causing mosaic disease of sugarcane (Saccharum officinarum L.) in India. Arch Virol 144:479–490PubMedCrossRef
15.
go back to reference Hema M, Sreenivasulu P, Saithri HS (2002) Taxonomic position of Sugarcane streak mosaic virus in the family Potyviridae. Arch Virol 147:1997–2007PubMedCrossRef Hema M, Sreenivasulu P, Saithri HS (2002) Taxonomic position of Sugarcane streak mosaic virus in the family Potyviridae. Arch Virol 147:1997–2007PubMedCrossRef
16.
go back to reference Janssen D, Martin G, Velasco L, Gomes P, Segundo E, Ruiz L, Cuadrado IM (2005) Absence of a coding region for the helper component-proteinase in the genome of Cucumber vein yellowing virus, a whitefly-transmitted member of the Potyviridae. Arch Virol 150:1439–1447PubMedCrossRef Janssen D, Martin G, Velasco L, Gomes P, Segundo E, Ruiz L, Cuadrado IM (2005) Absence of a coding region for the helper component-proteinase in the genome of Cucumber vein yellowing virus, a whitefly-transmitted member of the Potyviridae. Arch Virol 150:1439–1447PubMedCrossRef
17.
go back to reference Jensen SG, Lane LC, Seifers DL (1996) A new disease of maize and wheat in the High Plains. Plant Dis 80:1387–1390 Jensen SG, Lane LC, Seifers DL (1996) A new disease of maize and wheat in the High Plains. Plant Dis 80:1387–1390
18.
go back to reference Li W, Kilf ME, Webb SE, Baker CA, Adkins S (2008) Presence of P1b and absence of HC-Pro in Squash vein yellowing virus suggests a genera feature of the genus Ipomovirus in the family Potyviridae. Virus Res 135:213–219PubMedCrossRef Li W, Kilf ME, Webb SE, Baker CA, Adkins S (2008) Presence of P1b and absence of HC-Pro in Squash vein yellowing virus suggests a genera feature of the genus Ipomovirus in the family Potyviridae. Virus Res 135:213–219PubMedCrossRef
19.
go back to reference Mahmood T, Hein GL, Jensen SG (1998) Mixed infection of wheat with High Plains virus and Wheat streak mosaic virus from wheat curl mites in Nebraska. Plant Dis 82:311–315CrossRef Mahmood T, Hein GL, Jensen SG (1998) Mixed infection of wheat with High Plains virus and Wheat streak mosaic virus from wheat curl mites in Nebraska. Plant Dis 82:311–315CrossRef
20.
go back to reference Nakazono-Nagaoka E, Sato C, Kosaka Y, Natsuaki T (2004) Evaluation of cross-protection with an attenuated isolate of Bean yellow mosaic virus by differential detection of virus isolates using RT-PCR. J Gen Plant Pathol 70:359–362CrossRef Nakazono-Nagaoka E, Sato C, Kosaka Y, Natsuaki T (2004) Evaluation of cross-protection with an attenuated isolate of Bean yellow mosaic virus by differential detection of virus isolates using RT-PCR. J Gen Plant Pathol 70:359–362CrossRef
21.
go back to reference Rabenstein F, Seifers DL, Schubert J, French R, Stenger DC (2002) Phylogenetic relationships, strain diversity and biogeography of Tritimoviruses. J Gen Virol 83:895–906PubMed Rabenstein F, Seifers DL, Schubert J, French R, Stenger DC (2002) Phylogenetic relationships, strain diversity and biogeography of Tritimoviruses. J Gen Virol 83:895–906PubMed
22.
go back to reference Rastegar M, Izadpanah K, Masumi M, Siampour M, Zare A, Afsharifar A (2008) Analyses of the complete sequence of the genome of Wheat eqlid mosaic virus, a novel species in the genus Tritimovirus. Virus Genes 37:212–217PubMedCrossRef Rastegar M, Izadpanah K, Masumi M, Siampour M, Zare A, Afsharifar A (2008) Analyses of the complete sequence of the genome of Wheat eqlid mosaic virus, a novel species in the genus Tritimovirus. Virus Genes 37:212–217PubMedCrossRef
23.
go back to reference Robalia C, Durand-Tardif M, Tronchet M, Boudazin G (1989) Nucleotide sequence of Potato virus Y (N Strain) genomic RNA. J Gen Virol 70:935–947CrossRef Robalia C, Durand-Tardif M, Tronchet M, Boudazin G (1989) Nucleotide sequence of Potato virus Y (N Strain) genomic RNA. J Gen Virol 70:935–947CrossRef
24.
go back to reference Seifers DL, Harvey TL, Martin J, Jensen SG (1997) Identification of the wheat curl mite as the vector of the High Plains virus of corn and wheat. Plant Dis 81:1161–1166CrossRef Seifers DL, Harvey TL, Martin J, Jensen SG (1997) Identification of the wheat curl mite as the vector of the High Plains virus of corn and wheat. Plant Dis 81:1161–1166CrossRef
25.
go back to reference Seifers DL, Martin TJ, Harvey TJ, Fellers JP, Michaud JP (2009) Identification of the wheat curl mite as the vector of Triticum mosaic virus. Plant Dis 93:25–29CrossRef Seifers DL, Martin TJ, Harvey TJ, Fellers JP, Michaud JP (2009) Identification of the wheat curl mite as the vector of Triticum mosaic virus. Plant Dis 93:25–29CrossRef
26.
go back to reference Seifers DL, Martin TJ, Harvey TJ, Fellers JP et al (2008) Triticum mosaic virus: a new virus isolated from wheat in Kansas. Plant Dis 92:808–817CrossRef Seifers DL, Martin TJ, Harvey TJ, Fellers JP et al (2008) Triticum mosaic virus: a new virus isolated from wheat in Kansas. Plant Dis 92:808–817CrossRef
27.
go back to reference Seifers DL, Martin TJ, Harvey TL, Haber S, Haley S (2006) Temperature sensitivity and efficacy of Wheat streak mosaic virus resistance derived from CO060293 wheat. Plant Dis 90:623–628CrossRef Seifers DL, Martin TJ, Harvey TL, Haber S, Haley S (2006) Temperature sensitivity and efficacy of Wheat streak mosaic virus resistance derived from CO060293 wheat. Plant Dis 90:623–628CrossRef
28.
go back to reference Slykhuis JT (1955) Aceria tulipae Keifer (Acarina: Eriophyidae) in relation to the spread of Wheat streak mosaic. Phytopathology 45:116–128 Slykhuis JT (1955) Aceria tulipae Keifer (Acarina: Eriophyidae) in relation to the spread of Wheat streak mosaic. Phytopathology 45:116–128
29.
go back to reference Stenger DC, French R (2004) Complete nucleotide sequence of Oat necrotic mottle virus: A distinct Tritimovirus species (family Potyviridae) most closely related to Wheat streak mosaic virus. Arch Virol 149:633–640PubMedCrossRef Stenger DC, French R (2004) Complete nucleotide sequence of Oat necrotic mottle virus: A distinct Tritimovirus species (family Potyviridae) most closely related to Wheat streak mosaic virus. Arch Virol 149:633–640PubMedCrossRef
30.
go back to reference Stenger DC, Hall JS, Choi I-R, French R (1998) Phylogenetic relationships within the family Potyviridae: Wheat streak mosaic virus and Brome streak mosaic virus are not members of the genus Rymovirus. Phytopathology 88:782–787PubMedCrossRef Stenger DC, Hall JS, Choi I-R, French R (1998) Phylogenetic relationships within the family Potyviridae: Wheat streak mosaic virus and Brome streak mosaic virus are not members of the genus Rymovirus. Phytopathology 88:782–787PubMedCrossRef
31.
go back to reference Urcuqui-Inchima S, Haenni AL, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175PubMedCrossRef Urcuqui-Inchima S, Haenni AL, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175PubMedCrossRef
32.
go back to reference Viswanathan R, Balamuralikrishnan M, Karuppaiah R (2008) Characterization and genetic diversity of Sugarcane streak mosaic virus causing mosaic in sugarcane. Virus Genes 36:553–564PubMedCrossRef Viswanathan R, Balamuralikrishnan M, Karuppaiah R (2008) Characterization and genetic diversity of Sugarcane streak mosaic virus causing mosaic in sugarcane. Virus Genes 36:553–564PubMedCrossRef
Metadata
Title
The complete genome sequence of Triticum mosaic virus, a new wheat-infecting virus of the High Plains
Authors
John P. Fellers
Dallas Seifers
Marietta Ryba-White
T. Joe Martin
Publication date
01-09-2009
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 9/2009
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-009-0462-1

Other articles of this Issue 9/2009

Archives of Virology 9/2009 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.