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Published in: Behavioral and Brain Functions 1/2013

Open Access 01-12-2013 | Short paper

Investigation of rare variants in LRP1, KPNA1, ALS2CL and ZNF480 genes in schizophrenia patients reflects genetic heterogeneity of the disease

Authors: Loubna Jouan, Simon L Girard, Sylvia Dobrzeniecka, Amirthagowri Ambalavanan, Marie-Odile Krebs, Ridha Joober, Julie Gauthier, Patrick A Dion, Guy A Rouleau

Published in: Behavioral and Brain Functions | Issue 1/2013

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Abstract

Background

Schizophrenia is a severe psychiatric disease characterized by a high heritability and a complex genetic architecture. Recent reports based on exome sequencing analyses have highlighted a significant increase of potentially deleterious de novo mutations in different genes in individuals with schizophrenia.

Findings

This report presents the mutation screening results of four candidate genes for which such de novo mutations were previously reported (LRP1, KPNA1, ALS2CL and ZNF480). We have not identified any excess of rare variants in the additional SCZ cases we have screened.

Conclusions

This supports the notion that de novo mutations in these four genes are extremely rare in schizophrenia and further highlights the high degree of genetic heterogeneity of this disease.
Literature
2.
go back to reference Sullivan PF, Kendler KS, Neale MC: Schizophrenia as a complex trait: evidence from a meta-analysis of twin studies. Arch Gen Psychiatry. 2003, 60: 1187-1192. 10.1001/archpsyc.60.12.1187.CrossRefPubMed Sullivan PF, Kendler KS, Neale MC: Schizophrenia as a complex trait: evidence from a meta-analysis of twin studies. Arch Gen Psychiatry. 2003, 60: 1187-1192. 10.1001/archpsyc.60.12.1187.CrossRefPubMed
3.
go back to reference Gejman PV, Sanders AR, Kendler KS: Genetics of schizophrenia: new findings and challenges. Annu Rev Genomics Hum Genet. 2011, 12: 121-144. 10.1146/annurev-genom-082410-101459.CrossRefPubMed Gejman PV, Sanders AR, Kendler KS: Genetics of schizophrenia: new findings and challenges. Annu Rev Genomics Hum Genet. 2011, 12: 121-144. 10.1146/annurev-genom-082410-101459.CrossRefPubMed
4.
go back to reference Girard SL, Xiong L, Dion PA, Rouleau GA: Where are the missing pieces of the schizophrenia genetics puzzle?. Curr Opin Genet Dev. 2011, 21: 310-316. 10.1016/j.gde.2011.01.001.CrossRefPubMed Girard SL, Xiong L, Dion PA, Rouleau GA: Where are the missing pieces of the schizophrenia genetics puzzle?. Curr Opin Genet Dev. 2011, 21: 310-316. 10.1016/j.gde.2011.01.001.CrossRefPubMed
5.
go back to reference Awadalla P, Gauthier J, Myers RA, Casals F, Hamdan FF, Griffing AR, Cote M, Henrion E, Spiegelman D, Tarabeux J: Direct measure of the de novo mutation rate in autism and schizophrenia cohorts. Am J Hum Genet. 2010, 87: 316-324. 10.1016/j.ajhg.2010.07.019.PubMedCentralCrossRefPubMed Awadalla P, Gauthier J, Myers RA, Casals F, Hamdan FF, Griffing AR, Cote M, Henrion E, Spiegelman D, Tarabeux J: Direct measure of the de novo mutation rate in autism and schizophrenia cohorts. Am J Hum Genet. 2010, 87: 316-324. 10.1016/j.ajhg.2010.07.019.PubMedCentralCrossRefPubMed
6.
go back to reference Girard SL, Gauthier J, Noreau A, Xiong L, Zhou S, Jouan L, Dionne-Laporte A, Spiegelman D, Henrion E, Diallo O: Increased exonic de novo mutation rate in individuals with schizophrenia. Nat Genet. 2011, 43: 860-863. 10.1038/ng.886.CrossRefPubMed Girard SL, Gauthier J, Noreau A, Xiong L, Zhou S, Jouan L, Dionne-Laporte A, Spiegelman D, Henrion E, Diallo O: Increased exonic de novo mutation rate in individuals with schizophrenia. Nat Genet. 2011, 43: 860-863. 10.1038/ng.886.CrossRefPubMed
8.
go back to reference Genomes Project C: A map of human genome variation from population-scale sequencing. Nature. 2010, 467: 1061-1073. 10.1038/nature09534.CrossRef Genomes Project C: A map of human genome variation from population-scale sequencing. Nature. 2010, 467: 1061-1073. 10.1038/nature09534.CrossRef
10.
go back to reference Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR: A method and server for predicting damaging missense mutations. Nat Methods. 2010, 7: 248-249. 10.1038/nmeth0410-248.PubMedCentralCrossRefPubMed Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, Kondrashov AS, Sunyaev SR: A method and server for predicting damaging missense mutations. Nat Methods. 2010, 7: 248-249. 10.1038/nmeth0410-248.PubMedCentralCrossRefPubMed
11.
go back to reference Flanagan SE, Patch AM, Ellard S: Using SIFT and PolyPhen to predict loss-of-function and gain-of-function mutations. Genet Test Mol Biomarkers. 2010, 14: 533-537. 10.1089/gtmb.2010.0036.CrossRefPubMed Flanagan SE, Patch AM, Ellard S: Using SIFT and PolyPhen to predict loss-of-function and gain-of-function mutations. Genet Test Mol Biomarkers. 2010, 14: 533-537. 10.1089/gtmb.2010.0036.CrossRefPubMed
12.
go back to reference Wildeman M, van Ophuizen E, den Dunnen JT, Taschner PE: Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker. Hum Mutat. 2008, 29: 6-13. 10.1002/humu.20654.CrossRefPubMed Wildeman M, van Ophuizen E, den Dunnen JT, Taschner PE: Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker. Hum Mutat. 2008, 29: 6-13. 10.1002/humu.20654.CrossRefPubMed
13.
go back to reference Thomas PD, Kejariwal A, Campbell MJ, Mi H, Diemer K, Guo N, Ladunga I, Ulitsky-Lazareva B, Muruganujan A, Rabkin S: PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res. 2003, 31: 334-341. 10.1093/nar/gkg115.PubMedCentralCrossRefPubMed Thomas PD, Kejariwal A, Campbell MJ, Mi H, Diemer K, Guo N, Ladunga I, Ulitsky-Lazareva B, Muruganujan A, Rabkin S: PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res. 2003, 31: 334-341. 10.1093/nar/gkg115.PubMedCentralCrossRefPubMed
14.
go back to reference Xu B, Ionita-Laza I, Roos JL, Boone B, Woodrick S, Sun Y, Levy S, Gogos JA, Karayiorgou M: De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia. Nat Genet. 2012, 44: 1365-1369. 10.1038/ng.2446.PubMedCentralCrossRefPubMed Xu B, Ionita-Laza I, Roos JL, Boone B, Woodrick S, Sun Y, Levy S, Gogos JA, Karayiorgou M: De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia. Nat Genet. 2012, 44: 1365-1369. 10.1038/ng.2446.PubMedCentralCrossRefPubMed
15.
go back to reference Xu B, Roos JL, Dexheimer P, Boone B, Plummer B, Levy S, Gogos JA, Karayiorgou M: Exome sequencing supports a de novo mutational pdigm for schizophrenia. Nat Genet. 2011, 43: 864-868. 10.1038/ng.902.PubMedCentralCrossRefPubMed Xu B, Roos JL, Dexheimer P, Boone B, Plummer B, Levy S, Gogos JA, Karayiorgou M: Exome sequencing supports a de novo mutational pdigm for schizophrenia. Nat Genet. 2011, 43: 864-868. 10.1038/ng.902.PubMedCentralCrossRefPubMed
16.
go back to reference Xu B, Roos JL, Levy S, van Rensburg EJ, Gogos JA, Karayiorgou M: Strong association of de novo copy number mutations with sporadic schizophrenia. Nat Genet. 2008, 40: 880-885. 10.1038/ng.162.CrossRefPubMed Xu B, Roos JL, Levy S, van Rensburg EJ, Gogos JA, Karayiorgou M: Strong association of de novo copy number mutations with sporadic schizophrenia. Nat Genet. 2008, 40: 880-885. 10.1038/ng.162.CrossRefPubMed
Metadata
Title
Investigation of rare variants in LRP1, KPNA1, ALS2CL and ZNF480 genes in schizophrenia patients reflects genetic heterogeneity of the disease
Authors
Loubna Jouan
Simon L Girard
Sylvia Dobrzeniecka
Amirthagowri Ambalavanan
Marie-Odile Krebs
Ridha Joober
Julie Gauthier
Patrick A Dion
Guy A Rouleau
Publication date
01-12-2013
Publisher
BioMed Central
Published in
Behavioral and Brain Functions / Issue 1/2013
Electronic ISSN: 1744-9081
DOI
https://doi.org/10.1186/1744-9081-9-9

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