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Published in: BMC Oral Health 1/2021

Open Access 01-12-2021 | Human Immunodeficiency Virus | Study protocol

Dental caries and its association with the oral microbiomes and HIV in young children—Nigeria (DOMHaIN): a cohort study

Authors: Modupe O. Coker, Paul Akhigbe, Esosa Osagie, Nosakhare L. Idemudia, Oghenero Igedegbe, Nneka Chukwumah, Ruxton Adebiyi, Allison E. Mann, Lauren M. O’Connell, Ozo Obuekwe, Augustine Omoigberale, Manhattan E. Charurat, Vincent P. Richards

Published in: BMC Oral Health | Issue 1/2021

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Abstract

Background

This study seeks to understand better the mechanisms underlying the increased risk of caries in HIV-infected school-aged Nigerian children by examining the relationship between the plaque microbiome and perinatal HIV infection and exposure. We also seek to investigate how perinatal HIV infection and exposure impact tooth-specific microbiomes' role on caries disease progression.

Methods

The participants in this study were children aged 4 to 11 years recruited from the University of Benin Teaching Hospital (UBTH), Nigeria, between May to November 2019. Overall, 568 children were enrolled in three groups: 189 HIV-infected (HI), 189 HIV-exposed but uninfected (HEU) and 190 HIV-unexposed and uninfected (HUU) as controls at visit 1 with a 2.99% and 4.90% attrition rate at visit 2 and visit 3 respectively. Data were obtained with standardized questionnaires. Blood samples were collected for HIV, HBV and HCV screening; CD4, CD8 and full blood count analysis; and plasma samples stored for future investigations; oral samples including saliva, buccal swabs, oropharyngeal swab, tongue swab, dental plaque were collected aseptically from participants at different study visits.

Conclusions

Results from the study will provide critical information on how HIV exposure, infection, and treatment, influence the oral microbiome and caries susceptibility in children. By determining the effect on community taxonomic structure and gene expression of dental microbiomes, we will elucidate mechanisms that potentially create a predisposition for developing dental caries. As future plans, the relationship between respiratory tract infections, immune and inflammatory markers with dental caries in perinatal HIV infection and exposure will be investigated.
Appendix
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Literature
1.
go back to reference Rajonson N, et al. High prevalence of dental caries among HIV-infected children in West Africa compared to uninfected siblings. J Public Health Dent. 2017;77(3):234–43.CrossRef Rajonson N, et al. High prevalence of dental caries among HIV-infected children in West Africa compared to uninfected siblings. J Public Health Dent. 2017;77(3):234–43.CrossRef
2.
go back to reference Coker M, et al. Perinatal HIV infection and exposure and their association with dental caries in Nigerian Children. Pediatr Infect Dis J. 2018;37(1):59–65.CrossRef Coker M, et al. Perinatal HIV infection and exposure and their association with dental caries in Nigerian Children. Pediatr Infect Dis J. 2018;37(1):59–65.CrossRef
3.
go back to reference Beena JP. Prevalence of dental caries and its correlation with the immunologic profile in HIV-Infected children on antiretroviral therapy. Eur J Paediatr Dent. 2011;12(2):87–90.PubMed Beena JP. Prevalence of dental caries and its correlation with the immunologic profile in HIV-Infected children on antiretroviral therapy. Eur J Paediatr Dent. 2011;12(2):87–90.PubMed
4.
go back to reference Joosab Z, Yengopal V, Nqcobo CB. Caries prevalence among HIV-infected children between four and ten years old at a paediatric virology out-patients ward in Johannesburg, Gauteng Province, South Africa. SADJ. 2012;67(7):314–7.PubMed Joosab Z, Yengopal V, Nqcobo CB. Caries prevalence among HIV-infected children between four and ten years old at a paediatric virology out-patients ward in Johannesburg, Gauteng Province, South Africa. SADJ. 2012;67(7):314–7.PubMed
5.
go back to reference Obileye MF, et al. Dental caries status of HIV infected children in Nigeria. Nig Q J Hosp Med. 2009;19(4):210–3.PubMed Obileye MF, et al. Dental caries status of HIV infected children in Nigeria. Nig Q J Hosp Med. 2009;19(4):210–3.PubMed
6.
go back to reference Tofsky N, et al. Dental caries in HIV-infected children versus household peers: two-year findings. Pediatr Dent. 2000;22(3):207–14.PubMed Tofsky N, et al. Dental caries in HIV-infected children versus household peers: two-year findings. Pediatr Dent. 2000;22(3):207–14.PubMed
7.
go back to reference Hicks MJ, et al. Dental caries in HIV-infected children: a longitudinal study. Pediatr Dent. 2000;22(5):359–64.PubMed Hicks MJ, et al. Dental caries in HIV-infected children: a longitudinal study. Pediatr Dent. 2000;22(5):359–64.PubMed
8.
go back to reference Madigan A, et al. Caries experience and cariogenic markers in HIV-positive children and their siblings. Pediatr Dent. 1996;18(2):129–36.PubMed Madigan A, et al. Caries experience and cariogenic markers in HIV-positive children and their siblings. Pediatr Dent. 1996;18(2):129–36.PubMed
9.
go back to reference Valdez IH, Pizzo PA, Atkinson JC. Oral health of pediatric AIDS patients: a hospital-based study. ASDC J Dent Child. 1994;61(2):114–8.PubMed Valdez IH, Pizzo PA, Atkinson JC. Oral health of pediatric AIDS patients: a hospital-based study. ASDC J Dent Child. 1994;61(2):114–8.PubMed
10.
go back to reference Howell RB, et al. Dental caries in HIV-infected children. Pediatr Dent. 1992;14(6):370–1.PubMed Howell RB, et al. Dental caries in HIV-infected children. Pediatr Dent. 1992;14(6):370–1.PubMed
11.
go back to reference Kistler JO, et al. The oral microbiome in human immunodeficiency virus (HIV)-positive individuals. J Med Microbiol. 2015;64(9):1094–101.CrossRef Kistler JO, et al. The oral microbiome in human immunodeficiency virus (HIV)-positive individuals. J Med Microbiol. 2015;64(9):1094–101.CrossRef
12.
go back to reference Li Y, et al. HIV infection and microbial diversity in saliva. J Clin Microbiol. 2014;52(5):1400–11.CrossRef Li Y, et al. HIV infection and microbial diversity in saliva. J Clin Microbiol. 2014;52(5):1400–11.CrossRef
13.
go back to reference Dang AT, et al. Evidence of an increased pathogenic footprint in the lingual microbiome of untreated HIV infected patients. BMC Microbiol. 2012;12:153.CrossRef Dang AT, et al. Evidence of an increased pathogenic footprint in the lingual microbiome of untreated HIV infected patients. BMC Microbiol. 2012;12:153.CrossRef
14.
go back to reference Beck JM, et al. Multicenter comparison of lung and oral microbiomes of HIV-infected and HIV-uninfected individuals. Am J Respir Crit Care Med. 2015;192(11):1335–44.CrossRef Beck JM, et al. Multicenter comparison of lung and oral microbiomes of HIV-infected and HIV-uninfected individuals. Am J Respir Crit Care Med. 2015;192(11):1335–44.CrossRef
15.
go back to reference Goldberg BE, et al. The Oral Bacterial Communities of Children with Well-Controlled HIV Infection and without HIV Infection. PLoS One; 2015. 10(7): p. e0131615. Goldberg BE, et al. The Oral Bacterial Communities of Children with Well-Controlled HIV Infection and without HIV Infection. PLoS One; 2015. 10(7): p. e0131615.
16.
go back to reference Mukherjee PK., et al. Oral mycobiome analysis of HIV-infected patients: identification of Pichia as an antagonist of opportunistic fungi. PLoS Pathog; 2014. 10(3): p. e1003996. Mukherjee PK., et al. Oral mycobiome analysis of HIV-infected patients: identification of Pichia as an antagonist of opportunistic fungi. PLoS Pathog; 2014. 10(3): p. e1003996.
17.
go back to reference Hegde MC, et al. Oral microflora: a comparative study in hiv and normal patients. Indian J Otolaryngol Head Neck Surg. 2014;66(Suppl 1):126–32.CrossRef Hegde MC, et al. Oral microflora: a comparative study in hiv and normal patients. Indian J Otolaryngol Head Neck Surg. 2014;66(Suppl 1):126–32.CrossRef
18.
go back to reference Mukherjee PK, et al. Dysbiosis in the oral bacterial and fungal microbiome of HIV-infected subjects is associated with clinical and immunologic variables of HIV infection. PLoS One, 2018. 13(7): p. e0200285. Mukherjee PK, et al. Dysbiosis in the oral bacterial and fungal microbiome of HIV-infected subjects is associated with clinical and immunologic variables of HIV infection. PLoS One, 2018. 13(7): p. e0200285.
19.
go back to reference Moyes DL, et al. The gut and oral microbiome in HIV disease: a workshop report. Oral Dis. 2016;22(Suppl 1):166–70.CrossRef Moyes DL, et al. The gut and oral microbiome in HIV disease: a workshop report. Oral Dis. 2016;22(Suppl 1):166–70.CrossRef
20.
go back to reference Saxena D, et al. Human microbiome and HIV/AIDS. Curr HIV/AIDS Rep. 2012;9(1):44–51.CrossRef Saxena D, et al. Human microbiome and HIV/AIDS. Curr HIV/AIDS Rep. 2012;9(1):44–51.CrossRef
21.
go back to reference Liu G, et al. HIV infection affects Streptococcus mutans levels, but not genotypes. J Dent Res. 2012;91(9):834–40.CrossRef Liu G, et al. HIV infection affects Streptococcus mutans levels, but not genotypes. J Dent Res. 2012;91(9):834–40.CrossRef
22.
go back to reference Starr JR, et al. Oral microbiota in youth with perinatally acquired HIV infection. Microbiome. 2018;6(1):100.CrossRef Starr JR, et al. Oral microbiota in youth with perinatally acquired HIV infection. Microbiome. 2018;6(1):100.CrossRef
23.
go back to reference Brennan AT, et al. A meta-analysis assessing all-cause mortality in HIV-exposed uninfected compared with HIV-unexposed uninfected infants and children. AIDS. 2016;30(15):2351–60.CrossRef Brennan AT, et al. A meta-analysis assessing all-cause mortality in HIV-exposed uninfected compared with HIV-unexposed uninfected infants and children. AIDS. 2016;30(15):2351–60.CrossRef
24.
go back to reference Evans C, Jones CE, Prendergast AJ. HIV-exposed, uninfected infants: new global challenges in the era of paediatric HIV elimination. Lancet Infect Dis. 2016;16(6):e92–107.CrossRef Evans C, Jones CE, Prendergast AJ. HIV-exposed, uninfected infants: new global challenges in the era of paediatric HIV elimination. Lancet Infect Dis. 2016;16(6):e92–107.CrossRef
25.
go back to reference Coker M., et al. Perinatal HIV Infection and Exposure and their Association with Dental Caries in Nigerian Children. Pediatr Infect Dis J. 2017. Coker M., et al. Perinatal HIV Infection and Exposure and their Association with Dental Caries in Nigerian Children. Pediatr Infect Dis J. 2017.
26.
go back to reference Jumare J, et al. Compromised growth among HIV-exposed uninfected compared with unexposed children in Nigeria. Pediatr Infect Dis J. 2019;38(3):280–6.CrossRef Jumare J, et al. Compromised growth among HIV-exposed uninfected compared with unexposed children in Nigeria. Pediatr Infect Dis J. 2019;38(3):280–6.CrossRef
27.
go back to reference Coker MO, et al. Immune status, and not HIV infection or exposure, drives the development of the oral microbiota. Sci Rep. 2020;10(1):10830.CrossRef Coker MO, et al. Immune status, and not HIV infection or exposure, drives the development of the oral microbiota. Sci Rep. 2020;10(1):10830.CrossRef
28.
go back to reference le Roux SM, et al. Infectious morbidity of breastfed, HIV-exposed uninfected infants under conditions of universal antiretroviral therapy in South Africa: a prospective cohort study. Lancet Child Adolesc Health, 2020. le Roux SM, et al. Infectious morbidity of breastfed, HIV-exposed uninfected infants under conditions of universal antiretroviral therapy in South Africa: a prospective cohort study. Lancet Child Adolesc Health, 2020.
29.
go back to reference Federal Ministry of Health, N. Nigeria HIV/AIDS Indicator and Impact Survey (NAIIS) 2018:Technical Report. 2019: Abuja, Nigeria. Federal Ministry of Health, N. Nigeria HIV/AIDS Indicator and Impact Survey (NAIIS) 2018:Technical Report. 2019: Abuja, Nigeria.
30.
go back to reference Federal Ministry of Health, N. National Guidelines for HIV Prevention Treatment and Care. 2016. Federal Ministry of Health, N. National Guidelines for HIV Prevention Treatment and Care. 2016.
31.
go back to reference National Agency for the Control of AIDS, N. National Strategic Framework on HIV and AIDS: 2017–2021. 2017. National Agency for the Control of AIDS, N. National Strategic Framework on HIV and AIDS: 2017–2021. 2017.
32.
go back to reference Poh BK, et al. Nutritional status, dietary intake patterns and nutrition knowledge of children aged 5–6 years attending kindergartens in the Klang Valley, Malaysia Malays. J Nutr. 2012;18(2):231–42. Poh BK, et al. Nutritional status, dietary intake patterns and nutrition knowledge of children aged 5–6 years attending kindergartens in the Klang Valley, Malaysia Malays. J Nutr. 2012;18(2):231–42.
33.
go back to reference World Health Organization. Oral health surveys : basic methods, 4th ed. 1997: World Health Organization. World Health Organization. Oral health surveys : basic methods, 4th ed. 1997: World Health Organization.
34.
go back to reference ICDAS Coordinating Committee, I.C.D.a.A.S.I.C.C. Rationale and Evidence for the International Caries Detection and Assessment System (ICDAS II). In Clinical Models Workshop: Remin-Demin, Precavitaion, Caries: proceedings of the 7th Indiana conference. 2005: Indianapolis, USA. p. 161–221. ICDAS Coordinating Committee, I.C.D.a.A.S.I.C.C. Rationale and Evidence for the International Caries Detection and Assessment System (ICDAS II). In Clinical Models Workshop: Remin-Demin, Precavitaion, Caries: proceedings of the 7th Indiana conference. 2005: Indianapolis, USA. p. 161–221.
35.
go back to reference Rashed MA, Taha SE. Oral hygiene index simplified of high and low socioeconomic levels (9–13 years) school children. Egypt Dent J. 1995;41(3):1233–6.PubMed Rashed MA, Taha SE. Oral hygiene index simplified of high and low socioeconomic levels (9–13 years) school children. Egypt Dent J. 1995;41(3):1233–6.PubMed
36.
go back to reference Greene JC, Vermillion JR. The simplified oral hygiene index. J Am Dent Assoc. 1964;68:7–13.CrossRef Greene JC, Vermillion JR. The simplified oral hygiene index. J Am Dent Assoc. 1964;68:7–13.CrossRef
37.
go back to reference Folayan MO, et al. General anxiety, dental anxiety, digit sucking, caries and oral hygiene status of children resident in a semi-urban population in Nigeria. BMC Oral Health. 2018;18(1):66.CrossRef Folayan MO, et al. General anxiety, dental anxiety, digit sucking, caries and oral hygiene status of children resident in a semi-urban population in Nigeria. BMC Oral Health. 2018;18(1):66.CrossRef
38.
go back to reference Nascimento, M.M., et al. Oral arginine metabolism may decrease the risk for dental caries in children. J Dent Res, 2013. Nascimento, M.M., et al. Oral arginine metabolism may decrease the risk for dental caries in children. J Dent Res, 2013.
39.
go back to reference do Nascimento, C., et al. Impact of temperature and time storage on the microbial detection of oral samples by Checkerboard DNA-DNA hybridization method. Arch Oral Biol. 2014. 59(1): p. 12–21. do Nascimento, C., et al. Impact of temperature and time storage on the microbial detection of oral samples by Checkerboard DNA-DNA hybridization method. Arch Oral Biol. 2014. 59(1): p. 12–21.
40.
go back to reference Katsoulis J, et al. Impact of sample storage on detection of periodontal bacteria. Oral Microbiol Immunol. 2005;20(2):128–30.CrossRef Katsoulis J, et al. Impact of sample storage on detection of periodontal bacteria. Oral Microbiol Immunol. 2005;20(2):128–30.CrossRef
41.
go back to reference Charles TEO. Human immunodeficiency virus testing algorithm in resource limiting settings, in Current perspectives in HIV infection [Internet], S. Saxena, Editor. 2013: InTech. Charles TEO. Human immunodeficiency virus testing algorithm in resource limiting settings, in Current perspectives in HIV infection [Internet], S. Saxena, Editor. 2013: InTech.
42.
go back to reference Fryland M, et al. The Partec CyFlow Counter could provide an option for CD4+ T-cell monitoring in the context of scaling-up antiretroviral treatment at the district level in Malawi. Trans R Soc Trop Med Hyg. 2006;100(10):980–5.CrossRef Fryland M, et al. The Partec CyFlow Counter could provide an option for CD4+ T-cell monitoring in the context of scaling-up antiretroviral treatment at the district level in Malawi. Trans R Soc Trop Med Hyg. 2006;100(10):980–5.CrossRef
43.
go back to reference Pas, S., et al. Performance evaluation of the new Roche Cobas AmpliPrep/Cobas TaqMan HIV-1 test version 2.0 for quantification of human immunodeficiency virus type 1 RNA. J Clin Microbiol; 2010. 48(4): p. 1195–200. Pas, S., et al. Performance evaluation of the new Roche Cobas AmpliPrep/Cobas TaqMan HIV-1 test version 2.0 for quantification of human immunodeficiency virus type 1 RNA. J Clin Microbiol; 2010. 48(4): p. 1195–200.
44.
go back to reference Teng F, et al. Impact of DNA extraction method and targeted 16S-rRNA hypervariable region on oral microbiota profiling. Sci Rep. 2018;8(1):16321.CrossRef Teng F, et al. Impact of DNA extraction method and targeted 16S-rRNA hypervariable region on oral microbiota profiling. Sci Rep. 2018;8(1):16321.CrossRef
45.
go back to reference Yoon SH, et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol. 2017;67(5):1613–7.CrossRef Yoon SH, et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol. 2017;67(5):1613–7.CrossRef
46.
go back to reference Johnson JS, et al. Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis. Nat Commun. 2019;10(1):5029.CrossRef Johnson JS, et al. Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis. Nat Commun. 2019;10(1):5029.CrossRef
47.
go back to reference Caporaso JG, et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA. 2011;108(Suppl 1):4516–22.CrossRef Caporaso JG, et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA. 2011;108(Suppl 1):4516–22.CrossRef
48.
go back to reference Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. J. 2011; 17, p. 10–12. Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. J. 2011; 17, p. 10–12.
49.
go back to reference Callahan BJ, et al. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13(7):581–3.CrossRef Callahan BJ, et al. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13(7):581–3.CrossRef
50.
go back to reference Rognes, T., et al. VSEARCH: a versatile open source tool for metagenomics. PeerJ, 2016. 4: p. e2584. Rognes, T., et al. VSEARCH: a versatile open source tool for metagenomics. PeerJ, 2016. 4: p. e2584.
51.
go back to reference Nilsson RH, et al. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res. 2019;47(D1):D259–64.CrossRef Nilsson RH, et al. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res. 2019;47(D1):D259–64.CrossRef
52.
go back to reference Team, R. A language and environment for statistical computing. Computing, 2006. 1. Team, R. A language and environment for statistical computing. Computing, 2006. 1.
53.
go back to reference Silverman, JD., et al. A phylogenetic transform enhances analysis of compositional microbiota data. Elife, 2017; 6. Silverman, JD., et al. A phylogenetic transform enhances analysis of compositional microbiota data. Elife, 2017; 6.
54.
go back to reference Dixon, P. VEGAN, a package of R functions for community ecology. J Veg Sci. 2003. 14(6): p. 927–930. Dixon, P. VEGAN, a package of R functions for community ecology. J Veg Sci. 2003. 14(6): p. 927–930.
55.
go back to reference McMurdie PJ, Holmes S. Phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One. 2013; 8(4): p. e61217. McMurdie PJ, Holmes S. Phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One. 2013; 8(4): p. e61217.
56.
go back to reference Richards VP, et al. Microbiomes of site-specific dental plaques from children with different caries status. Infect Immun, 2017. 85(8). Richards VP, et al. Microbiomes of site-specific dental plaques from children with different caries status. Infect Immun, 2017. 85(8).
57.
go back to reference Dixon P. VEGAN, a package of R functions for community ecology. J Veg Sci. 2003;14(6):927–30.CrossRef Dixon P. VEGAN, a package of R functions for community ecology. J Veg Sci. 2003;14(6):927–30.CrossRef
58.
go back to reference Griffen AL, et al. Significant effect of HIV/HAART on oral microbiota using multivariate analysis. Sci Rep. 2019;9(1):19946.CrossRef Griffen AL, et al. Significant effect of HIV/HAART on oral microbiota using multivariate analysis. Sci Rep. 2019;9(1):19946.CrossRef
59.
go back to reference Pinto-Cardoso S, Klatt NR, Reyes-Teran G. Impact of antiretroviral drugs on the microbiome: unknown answers to important questions. Curr Opin HIV AIDS. 2018;13(1):53–60.CrossRef Pinto-Cardoso S, Klatt NR, Reyes-Teran G. Impact of antiretroviral drugs on the microbiome: unknown answers to important questions. Curr Opin HIV AIDS. 2018;13(1):53–60.CrossRef
Metadata
Title
Dental caries and its association with the oral microbiomes and HIV in young children—Nigeria (DOMHaIN): a cohort study
Authors
Modupe O. Coker
Paul Akhigbe
Esosa Osagie
Nosakhare L. Idemudia
Oghenero Igedegbe
Nneka Chukwumah
Ruxton Adebiyi
Allison E. Mann
Lauren M. O’Connell
Ozo Obuekwe
Augustine Omoigberale
Manhattan E. Charurat
Vincent P. Richards
Publication date
01-12-2021
Publisher
BioMed Central
Published in
BMC Oral Health / Issue 1/2021
Electronic ISSN: 1472-6831
DOI
https://doi.org/10.1186/s12903-021-01944-y

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