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Published in: Archives of Virology 1/2010

01-01-2010 | Brief Report

Genetic analysis of avian influenza virus from migratory waterfowl in Mexico

Authors: Maricela Montalvo-Corral, Jesús Hernández

Published in: Archives of Virology | Issue 1/2010

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Abstract

This study describes the genetic characterization of avian influenza virus from waterfowl in Mexico. Partial sequences of two H5, one H6, and one H9 hemmaglutinin (HA) genes were determined. The deduced amino acid sequences showed that they were low-pathogenic viruses (LPAI). Phylogenetic analysis of H5 and H6 HA indicates a North American lineage, closely related to contemporary Californian isolates, and H9 HA was closer to the Korean-like lineage. These results demonstrate the introduction of a diverse genetic pool of subtypes to Sonora estuaries through circulation of bird species carriers from the Pacific flyway.
Literature
1.
go back to reference Abdel-Ghafar AN, Chotpitayasunondh T, Gao Z, Hayden FG, Nguyen DH, de Jong MD, Naghdaliyev A, Peiris JS, Shindo N, Soeroso S, Uyeki TM (2008) Update on avian influenza A (H5N1) virus infection in humans. N Engl J Med 358:261–273CrossRefPubMed Abdel-Ghafar AN, Chotpitayasunondh T, Gao Z, Hayden FG, Nguyen DH, de Jong MD, Naghdaliyev A, Peiris JS, Shindo N, Soeroso S, Uyeki TM (2008) Update on avian influenza A (H5N1) virus infection in humans. N Engl J Med 358:261–273CrossRefPubMed
2.
3.
go back to reference Chen R, Holmes EC (2009) Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds. Virology 383:156–161CrossRefPubMed Chen R, Holmes EC (2009) Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds. Virology 383:156–161CrossRefPubMed
4.
go back to reference Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK (2008) The evolutionary genetics and emergence of avian influenza viruses in wild birds. PLoS Pathog 4:e1000076CrossRefPubMed Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK (2008) The evolutionary genetics and emergence of avian influenza viruses in wild birds. PLoS Pathog 4:e1000076CrossRefPubMed
5.
go back to reference Felsenstein J (1985) Confidence limits of phylogenies: An approach using bootstrap. Evolution 39:783–791CrossRef Felsenstein J (1985) Confidence limits of phylogenies: An approach using bootstrap. Evolution 39:783–791CrossRef
6.
go back to reference Fouchier RA, Schneeberger PM, Rozendaal FW, Broekman JM, Kemink SA, Munster V, Kuiken T, Rimmelzwaan GF, Schutten M, Van Doornum GJ, Koch G, Bosman A, Koopmans M, Osterhaus AD (2004) Avian influenza A virus (H7N7) associated with human conjunctivitis and a fatal case of acute respiratory distress syndrome. Proc Natl Acad Sci USA 101:1356–1361CrossRefPubMed Fouchier RA, Schneeberger PM, Rozendaal FW, Broekman JM, Kemink SA, Munster V, Kuiken T, Rimmelzwaan GF, Schutten M, Van Doornum GJ, Koch G, Bosman A, Koopmans M, Osterhaus AD (2004) Avian influenza A virus (H7N7) associated with human conjunctivitis and a fatal case of acute respiratory distress syndrome. Proc Natl Acad Sci USA 101:1356–1361CrossRefPubMed
7.
go back to reference Gillim-Ross L, Santos C, Chen Z, Aspelund A, Yang CF, Ye D, Jin H, Kemble G, Subbarao K (2008) Avian influenza h6 viruses productively infect and cause illness in mice and ferrets. J Virol 82:10854–10863CrossRefPubMed Gillim-Ross L, Santos C, Chen Z, Aspelund A, Yang CF, Ye D, Jin H, Kemble G, Subbarao K (2008) Avian influenza h6 viruses productively infect and cause illness in mice and ferrets. J Virol 82:10854–10863CrossRefPubMed
8.
go back to reference Gorman OT, Bean WJ, Webster RG (1992) Evolutionary processes in influenza viruses: divergence, rapid evolution, and stasis. Curr Top Microbiol Immunol 176:75–97PubMed Gorman OT, Bean WJ, Webster RG (1992) Evolutionary processes in influenza viruses: divergence, rapid evolution, and stasis. Curr Top Microbiol Immunol 176:75–97PubMed
9.
go back to reference Horimoto T, Rivera E, Pearson J, Senne D, Krauss S, Kawaoka Y, Webster RG (1995) Origin and molecular changes associated with emergence of a highly pathogenic H5N2 influenza virus in Mexico. Virology 213:223–230CrossRefPubMed Horimoto T, Rivera E, Pearson J, Senne D, Krauss S, Kawaoka Y, Webster RG (1995) Origin and molecular changes associated with emergence of a highly pathogenic H5N2 influenza virus in Mexico. Virology 213:223–230CrossRefPubMed
10.
go back to reference Jackwood MW, Stallknecht DE (2007) Molecular epidemiologic studies on North American H9 avian influenza virus isolates from waterfowl and shorebirds. Avian Dis 51:448–450CrossRefPubMed Jackwood MW, Stallknecht DE (2007) Molecular epidemiologic studies on North American H9 avian influenza virus isolates from waterfowl and shorebirds. Avian Dis 51:448–450CrossRefPubMed
11.
go back to reference Liu JH, Okazaki K, Shi WM, Kida H (2003) Phylogenetic analysis of hemagglutinin and neuraminidase genes of H9N2 viruses isolated from migratory ducks. Virus Genes 27:291–296CrossRefPubMed Liu JH, Okazaki K, Shi WM, Kida H (2003) Phylogenetic analysis of hemagglutinin and neuraminidase genes of H9N2 viruses isolated from migratory ducks. Virus Genes 27:291–296CrossRefPubMed
12.
go back to reference Liu S, Ji K, Chen J, Tai D, Jiang W, Hou G, Li J, Huang B (2009) Panorama phylogenetic diversity and distribution of Type A influenza virus. PLoS ONE 4:e5022CrossRefPubMed Liu S, Ji K, Chen J, Tai D, Jiang W, Hou G, Li J, Huang B (2009) Panorama phylogenetic diversity and distribution of Type A influenza virus. PLoS ONE 4:e5022CrossRefPubMed
13.
go back to reference Macken CA, Webby RJ, Bruno WJ (2006) Genotype turnover by reassortment of replication complex genes from avian influenza A virus. J Gen Virol 87:2803–2815CrossRefPubMed Macken CA, Webby RJ, Bruno WJ (2006) Genotype turnover by reassortment of replication complex genes from avian influenza A virus. J Gen Virol 87:2803–2815CrossRefPubMed
14.
go back to reference Peiris M, Yuen KY, Leung CW, Chan KH, Ip PL, Lai RW, Orr WK, Shortridge KF (1999) Human infection with influenza H9N2. Lancet 354:916–917CrossRefPubMed Peiris M, Yuen KY, Leung CW, Chan KH, Ip PL, Lai RW, Orr WK, Shortridge KF (1999) Human infection with influenza H9N2. Lancet 354:916–917CrossRefPubMed
15.
go back to reference Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425PubMed Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425PubMed
16.
go back to reference Sharp GB, Kawaoka Y, Jones DJ, Bean WJ, Pryor SP, Hinshaw V, Webster RG (1997) Coinfection of wild ducks by influenza A viruses: distribution patterns and biological significance. J Virol 71:6128–6135PubMed Sharp GB, Kawaoka Y, Jones DJ, Bean WJ, Pryor SP, Hinshaw V, Webster RG (1997) Coinfection of wild ducks by influenza A viruses: distribution patterns and biological significance. J Virol 71:6128–6135PubMed
17.
go back to reference Spackman E, Senne DA, Myers TJ, Bulaga LL, Garber LP, Perdue ML, Lohman K, Daum LT, Suarez DL (2002) Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J Clin Microbiol 40:3256–3260CrossRefPubMed Spackman E, Senne DA, Myers TJ, Bulaga LL, Garber LP, Perdue ML, Lohman K, Daum LT, Suarez DL (2002) Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J Clin Microbiol 40:3256–3260CrossRefPubMed
18.
go back to reference Spackman E, Stallknecht DE, Slemons RD, Winker K, Suarez DL, Scott M, Swayne DE (2005) Phylogenetic analyses of type A influenza genes in natural reservoir species in North America reveals genetic variation. Virus Res 114:89–100CrossRefPubMed Spackman E, Stallknecht DE, Slemons RD, Winker K, Suarez DL, Scott M, Swayne DE (2005) Phylogenetic analyses of type A influenza genes in natural reservoir species in North America reveals genetic variation. Virus Res 114:89–100CrossRefPubMed
19.
go back to reference Spackman E, Swayne DE, Suarez DL, Senne DA, Pedersen JC, Killian ML, Pasick J, Handel K, Pillai SP, Lee CW, Stallknecht D, Slemons R, Ip HS, Deliberto T (2007) Characterization of low-pathogenicity H5N1 avian influenza viruses from North America. J Virol 81:11612–11619CrossRefPubMed Spackman E, Swayne DE, Suarez DL, Senne DA, Pedersen JC, Killian ML, Pasick J, Handel K, Pillai SP, Lee CW, Stallknecht D, Slemons R, Ip HS, Deliberto T (2007) Characterization of low-pathogenicity H5N1 avian influenza viruses from North America. J Virol 81:11612–11619CrossRefPubMed
20.
go back to reference Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599CrossRefPubMed Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599CrossRefPubMed
21.
go back to reference Webby RJ, Woolcock PR, Krauss SL, Walker DB, Chin PS, Shortridge KF, Webster RG (2003) Multiple genotypes of nonpathogenic H6N2 influenza viruses isolated from chickens in California. Avian Dis 47:905–910CrossRefPubMed Webby RJ, Woolcock PR, Krauss SL, Walker DB, Chin PS, Shortridge KF, Webster RG (2003) Multiple genotypes of nonpathogenic H6N2 influenza viruses isolated from chickens in California. Avian Dis 47:905–910CrossRefPubMed
Metadata
Title
Genetic analysis of avian influenza virus from migratory waterfowl in Mexico
Authors
Maricela Montalvo-Corral
Jesús Hernández
Publication date
01-01-2010
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 1/2010
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-009-0554-y

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