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01-10-2013 | Brief Report

Evidence of recombination and genetic diversity in southern rice black-streaked dwarf virus

Authors: Yongqiang Li, Zihao Xia, Jun Peng, Tao Zhou, Zaifeng Fan

Published in: Archives of Virology | Issue 10/2013

Abstract

Southern rice black-streaked dwarf virus (SRBSDV) causes one of the most serious viral diseases of rice in China and Vietnam. Sequence identities of S10, encoding the major capsid protein, were 98.0 %-100 % and 98.3 %-100 % at the nucleotide and amino acid level, respectively. Our results suggest that the codon at position 550 of S10 is under positive selection, while most of the other codons are under neutral evolution. Putative recombination events were identified in genomic RNA segments S1, 2, 4, 5, 6 and 10, which are rare in plant-infecting dsRNA viruses. This study reveals the current state of SRBSDV evolution.

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Title: Evidence of recombination and genetic diversity in southern rice black-streaked dwarf virus
Authors: Yongqiang Li
Zihao Xia
Jun Peng
Tao Zhou
Zaifeng Fan
Publication date: 01-10-2013
Publisher: Springer Vienna
Published in: Archives of Virology / Issue 10/2013
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI: https://doi.org/10.1007/s00705-013-1696-5

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