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Published in: International Journal of Computer Assisted Radiology and Surgery 4/2016

01-04-2016 | Original Article

Correlation of magnetic resonance imaging with digital histopathology in prostate

Authors: Jin Tae Kwak, Sandeep Sankineni, Sheng Xu, Baris Turkbey, Peter L. Choyke, Peter A. Pinto, Maria Merino, Bradford J. Wood

Published in: International Journal of Computer Assisted Radiology and Surgery | Issue 4/2016

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Abstract

Purpose

We propose a systematic approach to correlate MRI and digital histopathology in prostate.

Methods

T2-weighted (T2W) MRI and diffusion-weighted imaging (DWI) are acquired, and a patient-specific mold (PSM) is designed from the MRI. Following prostatectomy, a whole mount tissue specimen is placed in the PSM and sectioned, ensuring that tissue blocks roughly correspond to MRI slices. Rigid body and thin plate spline deformable registration attempt to correct deformation during image acquisition and tissue preparation and achieve a more complete one-to-one correspondence between MRIs and tissue sections. Each tissue section is stained with hematoxylin and eosin and segmented by adopting a machine learning approach. Utilizing this tissue segmentation and image registration, the density of cellular and tissue components (lumen, nucleus, epithelium, and stroma) is estimated per MR voxel, generating density maps for the whole prostate.

Results

This study was approved by the local IRB, and informed consent was obtained from all patients. Registration of tissue specimens and MRIs was aided by the PSM and subsequent image registration. Tissue segmentation was performed using a machine learning approach, achieving \(\ge \)0.98 AUCs for lumen, nucleus, epithelium, and stroma. Examining the density map of tissue components, significant differences were observed between cancer, benign peripheral zone, and benign prostatic hyperplasia (p value \(<\)5e\(-\)2). Similarly, the signal intensity of the corresponding areas in both T2W MRI and DWI was significantly different (p value \(<\)1e\(-\)10).

Conclusions

The proposed approach is able to correlate MRI and digital histopathology of the prostate and is promising as a potential tool to facilitate a more cellular and zonal tissue-based analysis of prostate MRI, based upon a correlative histopathology perspective.
Literature
1.
2.
go back to reference Glaessgen A, Hamberg H, Pihl CG, Sundelin B, Nilsson B, Egevad L (2004) Interobserver reproducibility of modified Gleason score in radical prostatectomy specimens. Virchows Arch 445(1):17–21. doi:10.1007/s00428-004-1034-0 PubMed Glaessgen A, Hamberg H, Pihl CG, Sundelin B, Nilsson B, Egevad L (2004) Interobserver reproducibility of modified Gleason score in radical prostatectomy specimens. Virchows Arch 445(1):17–21. doi:10.​1007/​s00428-004-1034-0 PubMed
3.
go back to reference Allsbrook WC, Mangold KA, Johnson MH, Lane RB, Lane CG, Amin MB, Bostwick DG, Humphrey PA, Jones EC, Reuter VE, Sakr W, Sesterhenn IA, Troncoso P, Wheeler TM, Epstein JI (2001) Interobserver reproducibility of Gleason grading of prostatic carcinoma: urologic pathologists. Hum Pathol 32(1):74–80. doi:10.1053/hupa.2001.21134 CrossRefPubMed Allsbrook WC, Mangold KA, Johnson MH, Lane RB, Lane CG, Amin MB, Bostwick DG, Humphrey PA, Jones EC, Reuter VE, Sakr W, Sesterhenn IA, Troncoso P, Wheeler TM, Epstein JI (2001) Interobserver reproducibility of Gleason grading of prostatic carcinoma: urologic pathologists. Hum Pathol 32(1):74–80. doi:10.​1053/​hupa.​2001.​21134 CrossRefPubMed
4.
go back to reference Turkbey B, Mani H, Shah V, Rastinehad AR, Bernardo M, Pohida T, Pang YX, Daar D, Benjamin C, McKinney YL, Trivedi H, Chua C, Bratslavsky G, Shih JH, Linehan WM, Merino MJ, Choyke PL, Pinto PA (2011) Multiparametric 3T prostate magnetic resonance imaging to detect cancer: histopathological correlation using prostatectomy specimens processed in customized magnetic resonance imaging based molds. J Urol 186(5):1818–1824CrossRefPubMed Turkbey B, Mani H, Shah V, Rastinehad AR, Bernardo M, Pohida T, Pang YX, Daar D, Benjamin C, McKinney YL, Trivedi H, Chua C, Bratslavsky G, Shih JH, Linehan WM, Merino MJ, Choyke PL, Pinto PA (2011) Multiparametric 3T prostate magnetic resonance imaging to detect cancer: histopathological correlation using prostatectomy specimens processed in customized magnetic resonance imaging based molds. J Urol 186(5):1818–1824CrossRefPubMed
5.
go back to reference Habchi H, Bratan F, Paye A, Pagnoux G, Sanzalone T, Mege-Lechevallier F, Crouzet S, Colombel M, Rabilloud M, Rouviere O (2014) Value of prostate multiparametric magnetic resonance imaging for predicting biopsy results in first or repeat biopsy. Clin Radiol 69(3):e120–128CrossRefPubMed Habchi H, Bratan F, Paye A, Pagnoux G, Sanzalone T, Mege-Lechevallier F, Crouzet S, Colombel M, Rabilloud M, Rouviere O (2014) Value of prostate multiparametric magnetic resonance imaging for predicting biopsy results in first or repeat biopsy. Clin Radiol 69(3):e120–128CrossRefPubMed
7.
go back to reference Beck AH, Sangoi AR, Leung S, Marinelli RJ, Nielsen TO, van de Vijver MJ, West RB, van de Rijn M, Koller D (2011) Systematic analysis of breast cancer morphology uncovers stromal features associated with survival. Sci Transl Med 3(108):108ra113PubMed Beck AH, Sangoi AR, Leung S, Marinelli RJ, Nielsen TO, van de Vijver MJ, West RB, van de Rijn M, Koller D (2011) Systematic analysis of breast cancer morphology uncovers stromal features associated with survival. Sci Transl Med 3(108):108ra113PubMed
8.
go back to reference Doyle S, Feldman MD, Shih N, Tomaszewski J, Madabhushi A (2012) Cascaded discrimination of normal, abnormal, and confounder classes in histopathology: Gleason grading of prostate cancer. BMC Bioinform 13:282CrossRef Doyle S, Feldman MD, Shih N, Tomaszewski J, Madabhushi A (2012) Cascaded discrimination of normal, abnormal, and confounder classes in histopathology: Gleason grading of prostate cancer. BMC Bioinform 13:282CrossRef
9.
go back to reference Quint L, Van Erp J, Bland P, Del Buono E, Mandell SH, Grossman H, Gikas P (1991) Prostate cancer: correlation of MR images with tissue optical density at pathologic examination. Radiology 179(3):837–842CrossRefPubMed Quint L, Van Erp J, Bland P, Del Buono E, Mandell SH, Grossman H, Gikas P (1991) Prostate cancer: correlation of MR images with tissue optical density at pathologic examination. Radiology 179(3):837–842CrossRefPubMed
10.
go back to reference Schiebler ML, Tomaszewski JE, Bezzi M, Pollack HM, Kressel HY, Cohen EK, Altman HG, Gefter WB, Wein AJ, Axel L (1989) Prostatic carcinoma and benign prostatic hyperplasia: correlation of high-resolution MR and histopathologic findings. Radiology 172(1):131–137CrossRefPubMed Schiebler ML, Tomaszewski JE, Bezzi M, Pollack HM, Kressel HY, Cohen EK, Altman HG, Gefter WB, Wein AJ, Axel L (1989) Prostatic carcinoma and benign prostatic hyperplasia: correlation of high-resolution MR and histopathologic findings. Radiology 172(1):131–137CrossRefPubMed
11.
go back to reference Wang XZ, Wang B, Gao ZQ, Liu JG, Liu ZQ, Niu QL, Sun ZK, Yuan YX (2009) Diffusion-weighted imaging of prostate cancer: correlation between apparent diffusion coefficient values and tumor proliferation. J Magn Reson Imaging 29(6):1360–1366CrossRefPubMed Wang XZ, Wang B, Gao ZQ, Liu JG, Liu ZQ, Niu QL, Sun ZK, Yuan YX (2009) Diffusion-weighted imaging of prostate cancer: correlation between apparent diffusion coefficient values and tumor proliferation. J Magn Reson Imaging 29(6):1360–1366CrossRefPubMed
12.
go back to reference Zelhof B, Pickles M, Liney G, Gibbs P, Rodrigues G, Kraus S, Turnbull L (2009) Correlation of diffusion-weighted magnetic resonance data with cellularity in prostate cancer. BJU Int 103(7):883–888CrossRefPubMed Zelhof B, Pickles M, Liney G, Gibbs P, Rodrigues G, Kraus S, Turnbull L (2009) Correlation of diffusion-weighted magnetic resonance data with cellularity in prostate cancer. BJU Int 103(7):883–888CrossRefPubMed
13.
go back to reference Gibbs P, Liney GP, Pickles MD, Zelhof B, Rodrigues G, Turnbull LW (2009) Correlation of ADC and T2 measurements with cell density in prostate cancer at 3.0 Tesla. Investig Radiol 44(9):572–576CrossRef Gibbs P, Liney GP, Pickles MD, Zelhof B, Rodrigues G, Turnbull LW (2009) Correlation of ADC and T2 measurements with cell density in prostate cancer at 3.0 Tesla. Investig Radiol 44(9):572–576CrossRef
14.
go back to reference Langer DL, van der Kwast TH, Evans AJ, Plotkin A, Trachtenberg J, Wilson BC, Haider MA (2010) Prostate tissue composition and MR measurements: investigating the relationships between ADC, T2, K trans, ve, and corresponding histologic features 1. Radiology 255(2):485–494CrossRefPubMed Langer DL, van der Kwast TH, Evans AJ, Plotkin A, Trachtenberg J, Wilson BC, Haider MA (2010) Prostate tissue composition and MR measurements: investigating the relationships between ADC, T2, K trans, ve, and corresponding histologic features 1. Radiology 255(2):485–494CrossRefPubMed
15.
go back to reference Turkbey B, Shah VP, Pang Y, Bernardo M, Xu S, Kruecker J, Locklin J, Baccala AA Jr, Rastinehad AR, Merino MJ (2011) Is apparent diffusion coefficient associated with clinical risk scores for prostate cancers that are visible on 3-T MR images? Radiology 258(2):488–495CrossRefPubMedPubMedCentral Turkbey B, Shah VP, Pang Y, Bernardo M, Xu S, Kruecker J, Locklin J, Baccala AA Jr, Rastinehad AR, Merino MJ (2011) Is apparent diffusion coefficient associated with clinical risk scores for prostate cancers that are visible on 3-T MR images? Radiology 258(2):488–495CrossRefPubMedPubMedCentral
16.
go back to reference Liu P, Wang SJ, Turkbey B, Grant K, Pinto P, Choyke P, Wood BJ, Summers RM (2013) A prostate cancer computer-aided diagnosis system using multimodal magnetic resonance imaging and targeted biopsy labels. In: SPIE medical imaging, 2013. International Society for Optics and Photonics, pp 86701G-86701G-86706 Liu P, Wang SJ, Turkbey B, Grant K, Pinto P, Choyke P, Wood BJ, Summers RM (2013) A prostate cancer computer-aided diagnosis system using multimodal magnetic resonance imaging and targeted biopsy labels. In: SPIE medical imaging, 2013. International Society for Optics and Photonics, pp 86701G-86701G-86706
17.
go back to reference Shah V, Pohida T, Turkbey B, Mani H, Merino M, Pinto PA, Choyke P, Bernardo M (2009) A method for correlating in vivo prostate magnetic resonance imaging and histopathology using individualized magnetic resonance-based molds. Rev Sci Instrum 80(10):14301. doi:10.1063/1.3242697 Shah V, Pohida T, Turkbey B, Mani H, Merino M, Pinto PA, Choyke P, Bernardo M (2009) A method for correlating in vivo prostate magnetic resonance imaging and histopathology using individualized magnetic resonance-based molds. Rev Sci Instrum 80(10):14301. doi:10.​1063/​1.​3242697
18.
go back to reference Ojala T, Pietikainen M, Maenpaa T (2002) Multiresolution gray-scale and rotation invariant texture classification with local binary patterns. IEEE Trans Pattern Anal 24(7):971–987CrossRef Ojala T, Pietikainen M, Maenpaa T (2002) Multiresolution gray-scale and rotation invariant texture classification with local binary patterns. IEEE Trans Pattern Anal 24(7):971–987CrossRef
19.
go back to reference Guo ZH, Li Q, You J, Zhang D, Liu WH (2012) Local directional derivative pattern for rotation invariant texture classification. Neural Comput Appl 21(8):1893–1904 Guo ZH, Li Q, You J, Zhang D, Liu WH (2012) Local directional derivative pattern for rotation invariant texture classification. Neural Comput Appl 21(8):1893–1904
20.
go back to reference Koço S, Capponi C (2011) A boosting approach to multiview classification with cooperation. In: Machine learning and knowledge discovery in databases. Springer, Berlin, pp 209–228 Koço S, Capponi C (2011) A boosting approach to multiview classification with cooperation. In: Machine learning and knowledge discovery in databases. Springer, Berlin, pp 209–228
21.
go back to reference Vapnik VN (1995) The nature of statistical learning theory. Springer, New YorkCrossRef Vapnik VN (1995) The nature of statistical learning theory. Springer, New YorkCrossRef
23.
go back to reference Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez JC, Muller M (2011) pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinform 12(1):77CrossRef Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez JC, Muller M (2011) pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinform 12(1):77CrossRef
24.
go back to reference Kalavagunta C, Zhou X, Schmechel SC, Metzger GJ (2014) Registration of in vivo prostate MRI and pseudo-whole mount histology using local affine transformations guided by internal structures (LATIS). J Magn Reson Imaging. doi:10.1002/jmri.24629 Kalavagunta C, Zhou X, Schmechel SC, Metzger GJ (2014) Registration of in vivo prostate MRI and pseudo-whole mount histology using local affine transformations guided by internal structures (LATIS). J Magn Reson Imaging. doi:10.​1002/​jmri.​24629
Metadata
Title
Correlation of magnetic resonance imaging with digital histopathology in prostate
Authors
Jin Tae Kwak
Sandeep Sankineni
Sheng Xu
Baris Turkbey
Peter L. Choyke
Peter A. Pinto
Maria Merino
Bradford J. Wood
Publication date
01-04-2016
Publisher
Springer Berlin Heidelberg
Published in
International Journal of Computer Assisted Radiology and Surgery / Issue 4/2016
Print ISSN: 1861-6410
Electronic ISSN: 1861-6429
DOI
https://doi.org/10.1007/s11548-015-1287-x

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